Ostf1
DNA & RNA Element - microRNA
Mirbase AccmiRNA NameGene IDGene SymbolmiRNA AlignmentAlignmentGene AlignmentmiRNA StartmiRNA EndGene StartGene EndGenome CoordinatesConservationAlign ScoreSeed CatEnergymirSVR Score
MIMAT0000568rno-miR-330*259275Ostf1agaGACGUCCGGGACACGAAACg || | || | ||||||| ugcCUCCCGGAGC--UGCUUUGa221121[rn4:1:222183054-222183074:-]0.69781457-15.36-1.0090
MIMAT0000570rno-miR-331259275Ostf1aagauccUAUCCG-GGUCCCcg ||: | |||||| uacauauAUGUUCACCAGGGua315214235[rn4:1:222182840-222182861:-]0.72051210-12.18-0.6457
MIMAT0000577rno-miR-337259275Ostf1uuuccguaguauauCCUCGACuu ||||||| ------ugccucccGGAGCUGcu310117[rn4:1:222183058-222183074:-]0.69781250-12.36-0.1834
MIMAT0000607rno-miR-7a*259275Ostf1uacCGUCUGACACUAAACAACa | ||| | ||||||| agaGAAGA-GAUACUUUGUUGu220187207[rn4:1:222182868-222182888:-]0.72051417-9.17-1.1429
MIMAT0004705rno-let-7b*259275Ostf1cccUUCCGUCAUCCAACAUAUc :|| :| | |||||||| gaaGAGAUACUUUGUUGUAUAa220190211[rn4:1:222182864-222182885:-]0.72051557-10.45-1.2527
MIMAT0000894rno-miR-291a-5p259275Ostf1ucucucccggaGGUGAAACUAc |::||||||| gccucccggagCUGCUUUGAUg212223[rn4:1:222183052-222183073:-]0.69781477-20.45-0.6183
MIMAT0003115rno-miR-207259275Ostf1uucccuccucucggucCUCUUCg |||||| ugcggcuugccaauaaGAGAAGa28172194[rn4:1:222182881-222182903:-]0.72051206-15.27-0.2529
MIMAT0004791rno-miR-379*259275Ostf1caaucaccugguacaAUGUAUc |||||| cuuuguuguauaaaaUACAUAu28199220[rn4:1:222182855-222182876:-]0.72051206-4.79-0.2905
MIMAT0005330rno-miR-674-3p259275Ostf1aacaagacucuacCCUCGACac ||||||| -----ugccucccGGAGCUGcu310117[rn4:1:222183058-222183074:-]0.69781250-11.91-0.1834
MIMAT0012823rno-miR-490259275Ostf1gucGUACCU-CAGGAGGUCCAAc ||| | ||:| ||||| | auaCAUAUAUGUUCACCAGGGUa220213235[rn4:1:222182840-222182862:-]0.72051260-15.43-0.3438
MIMAT0012826rno-miR-220259275Ostf1uccaGAGACUG-UGACAC-CACc || |||: | |||| ||| ugacCUAUGAUGAGUGUGCGUGa218131153[rn4:1:222182922-222182944:-]0.72051200-12.52-0.4779
MIMAT0012830rno-miR-504259275Ostf1cugucucACGUCUGGUCCCAga ||: |||||||| acauauaUGUUCACCAGGGUaa316215236[rn4:1:222182839-222182860:-]0.72051350-18.04-0.6034
MIMAT0012854rno-miR-764259275Ostf1uccuccuGUACACUCGUGg ::| ||||||| uaccgucUGUAUGAGCACg21398116[rn4:1:222182959-222182977:-]0.72051447-10.36-0.7812
MIMAT0000782rno-miR-10a-5p259275Ostf1guGUUUAAGCCUAGAUGUCCCAu || || : | || |||||| uaCAUAUAU-GUUCACCAGGGUa222214235[rn4:1:222182840-222182861:-]0.72051236-16.25-0.6994
MIMAT0000798rno-miR-27b259275Ostf1cgUCUUGAAUCG--GUGACACUu | ::| |:|| |||||||| gcACGGCAUGGCUACACUGUGAc220112134[rn4:1:222182941-222182963:-]0.72051547-18.12-0.5742
MIMAT0000799rno-miR-27a259275Ostf1cgccUUGAAUCG--GUGACACUu ::| |:|| |||||||| gcacGGCAUGGCUACACUGUGAc218112134[rn4:1:222182941-222182963:-]0.72051527-19.55-0.5742
MIMAT0004729rno-miR-125a-3p259275Ostf1ccgaggguucUUGGAGUGGACa | :|||||||| agcguggguaAUUCUCACCUGc213153174[rn4:1:222182901-222182922:-]0.72051487-20.23-0.4585
MIMAT0000834rno-miR-128259275Ostf1uuuCUCUGGCCAAGUGACACu |: |: | | ||||||| cacGGCAUGGCUACACUGUGa219113133[rn4:1:222182942-222182962:-]0.72051507-18.55-1.1167
MIMAT0000844rno-miR-138259275Ostf1gccggacUAAGUGU-UGUGGUCga || :|:: |||||| aaaauacAUAUAUGUUCACCAGgg317210233[rn4:1:222182842-222182865:-]0.72051230-12.07-0.6095
MIMAT0000865rno-miR-190259275Ostf1uggAUUAUAUAGUUUGUAUAgu | :|||| | |||||| uugUUGUAUAAAAUACAUAUau320201222[rn4:1:222182853-222182874:-]0.72051390-7.60-0.2066
MIMAT0000873rno-miR-200c259275Ostf1gguaguaaugggccgUCAUAAu |||||| uuguuuugccagaagAGUAUUg286283[rn4:1:222182992-222183013:-]0.69781206-10.41-0.2188
MIMAT0000875rno-miR-200b259275Ostf1caguaguAAUGGUC-CGUCAUAAu ||:|||| |||||| gguuguuUUGCCAGAAGAGUAUUg2176083[rn4:1:222182992-222183015:-]0.69781276-17.95-0.2188
MIMAT0000879rno-miR-206259275Ostf1ggugugugaaggaauGUAAGGu |||||| uucuuuugcuuuugcCAUUCCa283152[rn4:1:222183023-222183044:-]0.69781206-13.57-0.1512
MIMAT0001538rno-miR-429259275Ostf1ugcCGUAAUGGUC-UGUCAUAAu |: ||:|||| | |||||| guuGUUUUGCCAGAAGAGUAUUg2206183[rn4:1:222182992-222183014:-]0.69781386-18.55-0.2188
MIMAT0001628rno-miR-433259275Ostf1uguggcuccucGGGUAGUACua :::|||||| gauuauuucuaUUUAUCAUGc-312249269[rn4:1:222182806-222182826:-]0.72051230-8.77-0.7794
MIMAT0003125rno-miR-1259275Ostf1uauguGUGAAGAAAUGUAAGGu ::||| || |||||| ucuuuUGCUU-UUGCCAUUCCa2183252[rn4:1:222183023-222183043:-]0.69781236-14.33-0.1512
MIMAT0003176rno-miR-539259275Ostf1ugUGUGGUUCCUAUUAAAGAgg | | ||| ||| |||||| aaAAAACAA-GAUUAUUUCUau321240260[rn4:1:222182815-222182835:-]0.72051420-9.95-0.1589
MIMAT0003194rno-miR-376c259275Ostf1ugcacUUUAAAGGAGAUACAa |:||| ::||||| | aaacaAGAUUAUUUCUAUUUa217243263[rn4:1:222182812-222182832:-]0.72051280-7.51-0.2171
MIMAT0003199rno-miR-381259275Ostf1cucucgaacgggAACAUAu |||||| agagauacuuugUUGUAUa28192210[rn4:1:222182865-222182883:-]0.72051206-10.91-0.5714
MIMAT0005284rno-miR-874259275Ostf1agccagggagcccGGUCCCGUc ||||||:| acauauauguucaCCAGGGUAa210215236[rn4:1:222182839-222182860:-]0.72051290-15.81-0.3154
MIMAT0005300rno-miR-182259275Ostf1gcCACAC-UCAAGA-UGG-----UAACGGUUu ||| | | |||| ||| ||||||| gcGUGGGUAAUUCUCACCUGCGGCUUGCCAAu224154185[rn4:1:222182890-222182921:-]0.72051487-19.21-0.6408
MIMAT0005300rno-miR-182259275Ostf1gccacACUCAAGAUGGUAACGGUUu ||:||| | ||||||: aaaccUGGGUUGU---UUUGCCAGa2215374[rn4:1:222183001-222183022:-]0.69781320-16.08-0.1296
MIMAT0005302rno-miR-190b259275Ostf1uuggAUUAUAGUU--UGUAUAgu | :||| || |||||| uuugUUGUAUAAAAUACAUAUau318200222[rn4:1:222182853-222182875:-]0.72051320-5.02-0.2066
MIMAT0005311rno-miR-410259275Ostf1ugUCCGGUA-GACACAAUAUAa | | || || ||||:||| agAAGAGAUACUUUGUUGUAUa220189210[rn4:1:222182865-222182886:-]0.72051380-8.31-0.2017
MIMAT0005320rno-miR-495259275Ostf1uucuucacgugguacAAACAAa |||||| uaagagaagagauacUUUGUUg28185206[rn4:1:222182869-222182890:-]0.72051206-10.57-0.3431
MIMAT0005339rno-miR-873259275Ostf1ucCUC-UGAGUGUU--CAAGGAcg ||| |:| |:|| |||||| aaGAGUAUUGAUAAUUGUUCCUuu3207497[rn4:1:222182978-222183001:-]0.70921370-14.00-0.1451
DNA & RNA Element - TRANSFAC
AccessionASDescriptionSpeciesEntrezPubmedBinding Info
G100511Ostf1Rattus norvegicus259275
DNA & RNA Element - miRNAMap
Gene NameMature miRNATarget StartTarget EndmiRNA 3-5AlignmentTarget 5-3
Ostf1rno-miR-12154-AUGUG--UGAAGAAAU--------GUAAGGU- |:| |||||||| |||||||AUGCCUAAACUUCUUUUGCUUUUGCCAUUCCAA
Ostf1rno-miR-128a115135UUUUCUCUG-GCCAA-GUGACACU- |:| :|| ||||||||-----CGGCAUGGCUACACUGUGAC
Ostf1rno-miR-128b115135CUUUCUCUG-GCCAA-GUGACACU- |:| :|| ||||||||-----CGGCAUGGCUACACUGUGAC
Ostf1rno-miR-140*150178-ACAGGCACC----AAGAUG-GGACACCAU || ||||| |||| | |||| ||GUGAGCGUGGGUAAUUCU-CACCUGCGGC-
Ostf1rno-miR-154114139-GCUU--CCGUUGUGCCUAUUGGAU- ||: ||| |||| :|:|||||ACGGCAUGGCUACACU-GUGACCUAU
Ostf1rno-miR-181a121149-UGA-GUGGCUGUC---GCAACUUACAA :|| |||:| | :| |||:|||GGCUACACUGUGACCUAUGAUGAGUGUG
Ostf1rno-miR-181b125149GGGUGGCUGUCG---UUACUUACAA |||:| | | :||||:|||-ACACUGUGACCUAUGAUGAGUGUG
Ostf1rno-miR-1935675-GACCCUGAAACAUC-CGGUCAA ||||| |||| |||||CCUGGG---UUGUUUUGCCAGA-
Ostf1rno-miR-2062354-GGUGUGUGAAGGAAU--------GUAAGGU- || |||||:|| |||||||GCCUAA-ACUUCUUUUGCUUUUGCCAUUCCAA
Ostf1rno-miR-22*174197UUUCGAACGGUGA----CUUCUUGA :|||||||| |||||:-CGGCUUGCCAAUAAGAGAAGAGA-
Ostf1rno-miR-27a111135-CGCCUUGAAUCG--GUGACACUU || ::| |:|| ||||||||AGCACGGCAUGGCUACACUGUGAC
Ostf1rno-miR-27b111135-CGUCUUGAAUCG--GUGACACUU ||| ::| |:|| ||||||||AGCACGGCAUGGCUACACUGUGAC
Ostf1rno-miR-291-5p125UCUCUCCCGGAGG-------UGAAACUAC- |||||| :||||||||------UGCCUCCCGGAGCUGCUUUGAUGC
Ostf1rno-miR-311048GUCGA------UACGGU-----------CGUAGAACGGA |||| ||||| || |:|||||GAGCUGCUUUGAUGCCUAAACUUCUUUUGC-UUUUGCCA
Ostf1rno-miR-342138162-CUGCCCACGCUAAAGACACACUCU ||:| |||:| | | |||:|UGAUGAGUGUGCG-UGAGCGUGGGU
Ostf1rno-miR-34b114139GUUAGUCG-AUUAAUGUGAC---GGAU- |:|| |:: ||||||| ||||---ACGGCAUGGCUACACUGUGACCUAU
Ostf1rno-miR-34c111133-CGUUAGUCG-AUUGAUGUGACGGA ||| |:|| |::||||||||:AGCA--CGGCAUGGCUACACUGUG-
Ostf1rno-miR-4295985UGCCGU---AAUGGUCUG-UCAUAAU- ||: ||:||||| ||||||:-GGGUUGUUUUGCCAGAAGAGUAUUGA
Ostf1rno-miR-433124145-UGUGGCUCCUCGGGUAGUACUA ||||:| || ||:|| ||||UACACUGU-GA-CCUAUGAUGAG
Ostf1rno-miR-449111133-UG-GUCG-AUUGUUAUGUGACGGU :| |:|| |::| |||||||:AGCACGGCAUGGC--UACACUGUG-
Ostf1rno-miR-540114138GGUCCUAGC--UG-GAGACUGGA- |:| || | || || ||||||ACGGCAUGGCUACACUGUGACCUA
Ostf1rno-miR-12452augUGUGAAGAAA--------UGUAAGGU | |||||||| |||||||cctAAACTTCTTTTGCTTTTGCCATTCCA
Ostf1rno-miR-128a106133uuUUCUCUGGCC------AAGUGACACU | ||| ||| | ||||||||gtATGAGCACGGCATGGCTACACTGTGA
Ostf1rno-miR-128b106133CUUUCUCUGGCC------AAGUGACACU| | ||| ||| | ||||||||GTATGAGCACGGCATGGCTACACTGTGA
Ostf1rno-miR-140*151178ACAGGCACC----AAGAUGGGACACCau|| ||||| |||| |||| ||TGAGCGTGGGTAATTCTCACCTGCGGct
Ostf1rno-miR-154115137GC--UUCCGUUGUGCCUAUUGGAU|| | ||| |||| :|:|||||CGGCATGGCTACAC-TGTGACCTA
Ostf1rno-miR-181a122148uGA-GUGGCUGUCG---CAACUUACAa || |||:| | | | |||:|||gCTACACTGTGACCTATGATGAGTGTg
Ostf1rno-miR-181b124148ggGUGGCUGUCG---UUACUUACAa |||:| | | :||||:|||taCACTGTGACCTATGATGAGTGTg
Ostf1rno-miR-1935775GACCCUGAAACAUCCGGUCaa||||| : || | |||||CTGGGTTGTTTT--GCCAGaa
Ostf1rno-miR-2062452GGUGUGUGAAG-----GAA---UGUAAGGU|| :| ||||| ||| |||||||CC-TAAACTTCTTTTGCTTTTGCCATTCCA
Ostf1rno-miR-22*173197uuuCGAACGGUGA----CUUCUuga |||||||| | |||||gcgGCTTGCCAATAAGAGAAGAgat
Ostf1rno-miR-27a114134cGCCUUGAAUCG--GUGACACUu ||| | |:|| ||||||||aCGG--CATGGCTACACTGTGAc
Ostf1rno-miR-27b112134CGUCUUGAAUCG--GUGACACUu||| ::| |:|| ||||||||GCACGGCATGGCTACACTGTGAc
Ostf1rno-miR-311347GUCGA---UACGG---U--------CGUAGAACGGa| ||| ||||| | || |:|||||CTGCTTTGATGCCTAAACTTCTTTTGC-TTTTGCCa
Ostf1rno-miR-314272guCGAUACGGU--------C-GUAGAACGGa || || ||| | ::|:|||||ttGCCATTCCAAAACCTGGGTTGTTTTGCCa
Ostf1rno-miR-342132155CUGCCCAC-GCUAAAGACACACUCu||| || :|| | || |||||GACCTATGATGA-GTGTGCGTGAGc
Ostf1rno-miR-34b111137guuaGUCG-AUUAAUGUGAC---GGAU |:|| |:: ||||||| ||||agcaCGGCATGGCTACACTGTGACCTA
Ostf1rno-miR-34c112136CGUUAGUCG-AUUGAUGUGAC---GGA||| |:|| |::|||||||| |||GCA--CGGCATGGCTACACTGTGACCT
Ostf1rno-miR-4296183ugcCGUAAUGGUC-UGUCAUAAu |: ||:|||| | ||||||gttGTTTTGCCAGAAGAGTATTg
Ostf1rno-miR-433125144UGUGGCUCCUCGGGUAGUACUa||||:| || ||:|| ||||ACACTG-TGA-CCTATGATGAg
Ostf1rno-miR-449113133ugGUCG-AUUGUUAUGUGACggu |:|| |::| |||||||caCGGCATGGC--TACACTGtga
Ostf1rno-miR-493119139gACCG-UGUGUCAUCUGGAagu |||| |||| || |||||aTGGCTACACTGT-GACCTatg
Ostf1rno-miR-503118gucaugacaagggCGACGAu ||||||--tgcctcccggaGCTGCTt
Ostf1rno-miR-128a126133UU-----------------UUCU--CUG-GCCAA-GUGACACU :|| |:| :|| ||||||||UUCCUUUUACCGUCUGUAUGAGCACGGCAUGGCUACACUGUGAC
Ostf1rno-miR-128b126133-------------------CUUUCUCUG-GCCAA-GUGACACU ||: |:| :|| ||||||||UUCCUUUUACCGUCUGUAUGAGCACGGCAUGGCUACACUGUGAC
Ostf1rno-miR-27a127134--------------------CGCCUUGAAUCG--GUGACACUU || ::| |:|| ||||||||UCCUUUUACCGUCUGUAUGAGCACGGCAUGGCUACACUGUGAC
Ostf1rno-miR-27b127134--------------------CGUCUUGAAUCG--GUGACACUU ||| :| |:|| ||||||||UCCUUUUACCGUCUGUAUGAGCACGGCAUGGCUACACUGUGAC
DNA & RNA Element - RAID2
Gene NameRAID IDInteractor 1Category 1ID 1Interactor 2Category 2ID 2MethodsScore
Ostf1RAID00169691rno-miR-3596dmiRNAMIMAT0017823Ostf1mRNA259275Prediction0.1828
Ostf1RAID00243720rno-let-7f-5pmiRNAMIMAT0000778Ostf1mRNA259275Prediction0.1828
Ostf1RAID00624626rno-miR-433-3pmiRNAMIMAT0001628Ostf1mRNA259275Prediction0.1828
Ostf1RAID00668339rno-let-7b-3pmiRNAMIMAT0004705Ostf1mRNA259275Prediction0.1828
Ostf1RAID00879642rno-miR-27a-3pmiRNAMIMAT0000799Ostf1mRNA259275Prediction0.1828
Ostf1RAID01086459rno-let-7a-1-3pmiRNAMIMAT0017085Ostf1mRNA259275Prediction0.1828
Ostf1RAID01137675rno-let-7b-5pmiRNAMIMAT0000775Ostf1mRNA259275Prediction0.1828
Ostf1RAID01403477rno-miR-206-3pmiRNAMIMAT0000879Ostf1mRNA259275Prediction0.1828
Ostf1RAID01527420rno-miR-10a-5pmiRNAMIMAT0000782Ostf1mRNA259275Prediction0.1828
Ostf1RAID01696112rno-miR-1-3pmiRNAMIMAT0003125Ostf1mRNA259275Prediction0.1828
Ostf1RAID01943970rno-let-7e-5pmiRNAMIMAT0000777Ostf1mRNA259275Prediction0.1828
Ostf1RAID01956119rno-miR-429miRNAMIMAT0001538Ostf1mRNA259275Prediction0.1828
Ostf1RAID02188055rno-let-7c-2-3pmiRNAMIMAT0017088Ostf1mRNA259275Prediction0.1828
Ostf1RAID02245195rno-miR-539-5pmiRNAMIMAT0003176Ostf1mRNA259275Prediction0.1828
Ostf1RAID02366983rno-miR-98-3pmiRNAMIMAT0017111Ostf1mRNA259275Prediction0.1828
Ostf1RAID02383184rno-miR-873-5pmiRNAMIMAT0005339Ostf1mRNA259275Prediction0.1828
Ostf1RAID02482069rno-miR-495miRNAMIMAT0005320Ostf1mRNA259275Prediction0.1828
Ostf1RAID02582502rno-miR-874-3pmiRNAMIMAT0005284Ostf1mRNA259275Prediction0.1828
Ostf1RAID02603968rno-miR-98-5pmiRNAMIMAT0000819Ostf1mRNA259275Prediction0.1828
Ostf1RAID02730055rno-miR-33-3pmiRNAMIMAT0017104Ostf1mRNA259275Prediction0.1828
Ostf1RAID02885344rno-let-7a-5pmiRNAMIMAT0000774Ostf1mRNA259275Prediction0.1828
Ostf1RAID02901120rno-miR-190b-5pmiRNAMIMAT0005302Ostf1mRNA259275Prediction0.1828
Ostf1RAID02952905rno-miR-125a-3pmiRNAMIMAT0004729Ostf1mRNA259275Prediction0.1828
Ostf1RAID03044248rno-let-7i-5pmiRNAMIMAT0000779Ostf1mRNA259275Prediction0.1828
Ostf1RAID03083102rno-miR-138-5pmiRNAMIMAT0000844Ostf1mRNA259275Prediction0.1828
Ostf1RAID03095239rno-miR-27b-3pmiRNAMIMAT0000798Ostf1mRNA259275Prediction0.1828
Ostf1RAID03108588rno-miR-190a-5pmiRNAMIMAT0000865Ostf1mRNA259275Prediction0.1828
Ostf1RAID03455045rno-let-7c-5pmiRNAMIMAT0000776Ostf1mRNA259275Prediction0.1828
Ostf1RAID03511531rno-miR-410-3pmiRNAMIMAT0005311Ostf1mRNA259275Prediction0.1828
Ostf1RAID03553955rno-miR-376c-3pmiRNAMIMAT0003194Ostf1mRNA259275Prediction0.1828
Ostf1RAID03606452rno-miR-200b-3pmiRNAMIMAT0000875Ostf1mRNA259275Prediction0.1828
Ostf1RAID03623041rno-miR-449c-3pmiRNAMIMAT0017804Ostf1mRNA259275Prediction0.1828
Ostf1RAID03711622rno-miR-128-3pmiRNAMIMAT0000834Ostf1mRNA259275Prediction0.1828
Ostf1RAID03766356rno-miR-182miRNAMIMAT0005300Ostf1mRNA259275Prediction0.2202
Ostf1RAID03777146rno-miR-200c-3pmiRNAMIMAT0000873Ostf1mRNA259275Prediction0.1828
Ostf1RAID03866552rno-miR-381-3pmiRNAMIMAT0003199Ostf1mRNA259275Prediction0.1828
Ostf1RAID03976497rno-let-7f-1-3pmiRNAMIMAT0017089Ostf1mRNA259275Prediction0.1828