DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000574 rno-miR-140* 171565 Stambp ggcaccAAGAUGGGACACCAu || |:: ||||||| cuccauUUGUGUACUGUGGUa 2 16 105 125 [rn4:4:117766992-117767012:-] 0.5026 151 7 -15.92 -0.9830 MIMAT0003162 rno-miR-1* 171565 Stambp cccAUGUAUUUCUUCAUACACg |:::|| | :||||||| auuUGUGUACUGUGGUAUGUGu 2 20 109 130 [rn4:4:117766987-117767008:-] 0.5026 155 7 -14.04 -0.3294 MIMAT0005278 rno-miR-466b 171565 Stambp guaccUGUAUGUGUGUGUGUAu ||| |||||||||||| cagacACAGACACACACACAUa 2 18 150 171 [rn4:4:117766946-117766967:-] 0.4962 177 7 -26.95 -1.2142 MIMAT0005285 rno-miR-877 171565 Stambp gggacgcgguAGAGGAGAUg | ||||||| ccccccaaguUGUCCUCUAa 2 11 84 103 [rn4:4:117767014-117767033:-] 0.5026 142 7 -16.39 -0.5770 MIMAT0012837 rno-miR-632 171565 Stambp aggccGUCCUUUGUCUGUg || || ||||||| acacaCA-GACACAGACAc 2 15 145 162 [rn4:4:117766955-117766972:-] 0.4962 148 7 -16.68 -0.5752 MIMAT0000573 rno-miR-140 171565 Stambp gauGGUAUCCCAUUUUG-GUGAc ||| |||| |||| |||| ggcCCACUGGGU-AAACACACUu 2 20 24 45 [rn4:4:117767072-117767093:-] 0.5026 129 0 -18.32 -0.2306 MIMAT0000615 rno-miR-101b 171565 Stambp aagucGAUAGUGUCAUGACAu | ||: ||||||| aaccuCCAUUUGUGUACUGUg 2 17 102 122 [rn4:4:117766995-117767015:-] 0.5026 144 7 -11.76 -0.5538 MIMAT0000814 rno-miR-34c 171565 Stambp cguUAGUCGAUUGAUGUG-ACGGa | ::| ||| |||| |||| cccACUGGGUAAACACACUUGCCa 2 21 26 49 [rn4:4:117767068-117767091:-] 0.5026 124 0 -15.06 -0.2378 MIMAT0000815 rno-miR-34a 171565 Stambp uguUGGUCGA-UUCUGUG-ACGGu ||::| | || |||| |||| cccACUGGGUAAACACACUUGCCa 2 20 26 49 [rn4:4:117767068-117767091:-] 0.5026 126 0 -19.47 -0.2443 MIMAT0000823 rno-miR-101a 171565 Stambp aagucaaUAGUGUCAUGACAu ||: ||||||| aaccuccAUUUGUGUACUGUg 2 15 102 122 [rn4:4:117766995-117767015:-] 0.5026 142 7 -11.76 -0.5610 MIMAT0000859 rno-miR-181b 171565 Stambp ugggUGGCUGUCG-UUACUUACAa |:: | | | ||| ||||| auuaAUUUAAAACAAAUAAAUGUa 2 20 175 198 [rn4:4:117766919-117766942:-] 0.4898 122 0 -8.01 -0.1786 MIMAT0000865 rno-miR-190 171565 Stambp ugGAUUAUAUAGUUUGUAUAGu | :| | | || ||||||: caCAGACACA-CACACAUAUUa 2 21 154 174 [rn4:4:117766943-117766963:-] 0.4962 134 0 -9.00 -0.2344 MIMAT0003201 rno-miR-382 171565 Stambp gcuuaGGUGGUGC--UUGU-UGAAg ||||:: | |||| |||| guggcCCACUGGGUAAACACACUUg 2 18 22 46 [rn4:4:117767071-117767095:-] 0.5026 120 0 -12.09 -0.2705 MIMAT0005299 rno-miR-181d 171565 Stambp ugggUGGCUGUUG-UUACUUACAa |:: | ||| ||| ||||| auuaAUUUAAAACAAAUAAAUGUa 2 20 175 198 [rn4:4:117766919-117766942:-] 0.4898 130 0 -8.62 -0.1770 MIMAT0005302 rno-miR-190b 171565 Stambp uuggauuauaGUUUGUAUAGu || ||||||: cacagacacaCACACAUAUUa 2 12 154 174 [rn4:4:117766943-117766963:-] 0.4962 131 0 -9.00 -0.2366

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G054172 Stambp Rattus norvegicus 171565

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Stambp; Amsh rno-miR-1* 114 132 CCCAUGUAUUUCUUCAUACACG- |||| | :|||||||: -UGUACU----GUGGUAUGUGUG Stambp; Amsh rno-miR-101a 90 124 GAAGUCAAUAG-----------UGU---CAUGACAU- ||||:|| |: |||||||: ---AAGUUGUCCUCUAACCUCCAUUUGUGUACUGUGG Stambp; Amsh rno-miR-101b 90 124 GAAGUCGAUAG-----------UGU---CAUGACAU- ||:|:|| |: |||||||: ---AAGUUGUCCUCUAACCUCCAUUUGUGUACUGUGG Stambp; Amsh rno-miR-10a 8 38 -GUGUUUAAGCCUA----GA-UGUCCCAU- ||::|| ||| | || ||||| UCAUGAACCAGGAGGUGGCCCACUGGGUAA Stambp; Amsh rno-miR-122a 148 168 -UGUUUGUGGUAACAGUGUGAGGU |||:|||| ||||| CACAGACACAGACA-CACACA--- Stambp; Amsh rno-miR-127 60 87 -UC-GGUUCGAGUC--UG--CCUAGGCU || |||||:|| :| |||||| CAGCCCAAGUUCUAUUGCUGGGAUCCC- Stambp; Amsh rno-miR-128a 17 34 -UUUUCUCUGGCCAAGUGACACU ::|:| |:|| ||||| AGGAGGUGGCC----CACUGG-- Stambp; Amsh rno-miR-128b 17 34 -CUUUCUCUGGCCAAGUGACACU |:|:| |:|| ||||| AGGAGGUGGCC----CACUGG-- Stambp; Amsh rno-miR-139 111 125 UCUGUGCACGUGACAUCU :|||:|||||:| ----UUGUGUACUGUGGU Stambp; Amsh rno-miR-140 24 52 GAUGGUAU-CCCAUUU-------UGGUGA :|| ||||||| :|||| -GGCCCACUGGGUAAACACACUUGCCACC Stambp; Amsh rno-miR-140* 113 138 -ACA-GGCACCA-----AGAUGGGACACCAU ||| |:||||| | ||||| GUGUACUGUGGUAUGUGUGUACCCA------ Stambp; Amsh rno-miR-152 86 122 -GGGUUCAAGACAG---------------UACGUGACU ||||||| |||| :||:|||| CCCCAAGU--UGUCCUCUAACCUCCAUUUGUGUACUGU Stambp; Amsh rno-miR-187 121 158 GCCG-----ACGU-----------UGUGU-UCUGUGCU ||: ||:| ||||| |||||| UGGUAUGUGUGUACCCACAUAUACACACACAGACACA- Stambp; Amsh rno-miR-199a 11 36 -CUU-GUCCAUCAGACUUGUGACCC- ||| |||| :|| | ||||||| UGAACCAGGAGGUG-GCCCACUGGGU Stambp; Amsh rno-miR-207 17 36 UUCCCUCCUCUCGGU---CCUCUUCG ||||| | ||| ||: --AGGAGGUG-GCCCACUGGGU---- Stambp; Amsh rno-miR-296 15 30 UGUCCUAACUCCCCCCCGGGA ||||| || ||||| CCAGGA------GGUGGCCCA Stambp; Amsh rno-miR-297 126 147 GUACGUAUGUACGUGUGUAUGUA :||::||| ||||:||||| UGUGUGUACC--CACAUAUACAC Stambp; Amsh rno-miR-299 112 137 -UACAU-ACACCCUGC-CAUUUGGU :|||| ||||| |:| ||: ||| UGUGUACUGUGGUAUGUGUGUACCC Stambp; Amsh rno-miR-324-3p 3 35 -GGUC-GUCG-UGGACC-CCGUC-----ACC- :||| || ||| || ||::| ||| CUCAGUCAUGAACCAGGAGGUGGCCCACUGGG Stambp; Amsh rno-miR-324-5p 47 85 UGUGGUUA-------CGGGAUC----------CCCUACGC |||||| |||| || ||||| CCACCAAGCCCAACAGCCCAAGUUCUAUUGCUGGGAUC-- Stambp; Amsh rno-miR-326 17 35 UGACCUCCUUCCCGGGUCUCC- ||||| |||||| || --AGGAGGU--GGCCCACUGGG Stambp; Amsh rno-miR-331 16 37 AAGAUCCUAU-CCGGGUC-CCCG- |||| |||||| |||: ---CAGGAGGUGGCCCACUGGGUA Stambp; Amsh rno-miR-338 56 83 AGUUGU----UUUAGUGACUACGACCU- ||||| ||:|: || ||||||: CCAACAGCCCAAGUU-CUAUUGCUGGGA Stambp; Amsh rno-miR-346 17 42 -UCUCCGUCCG--UGAGUCCGUCUGU- :||||: ||| ||| :||:| ||| AGGAGGU-GGCCCACU-GGGUAAACAC Stambp; Amsh rno-miR-34a 9 51 -UUGUUGGUC-----------GAUUC-----UGUGA-CGGU | |||||| ||::| ||||| |||| CAUGAACCAGGAGGUGGCCCACUGGGUAAACACACUUGCCAC Stambp; Amsh rno-miR-34c 27 50 CGUUAGUCGAUUGAUGUG-ACGGA || | :|: ||| |||| |||| CCACUGGGUAAAC-ACACUUGCCA Stambp; Amsh rno-miR-351 15 36 -GUCCGAGUUUC-CCGAGGAGUCCCU |||| :| ||| || | ||| CCAGGA----GGUGGC-CCACUGGGU Stambp; Amsh rno-miR-363-5p 72 91 UUUAACGUAGCACUAGGUGGGC ||||| ||||| ||| -UAUUGCUGG--GAUCCCCCCA Stambp; Amsh rno-miR-370 12 37 -UUGGUCCAA-GGUGGGGUCGUCCG- ||||||| : :||| ::||: GAACCAGGAGGUGGCCCAC-UGGGUA Stambp; Amsh rno-miR-449 28 51 -UGGUCGAUUGUUAUGUGA-CGGU- ||::| ||| ||||| |||| CACUGGGUAAAC--ACACUUGCCAC Stambp; Amsh rno-miR-10a 9 36 GUGUUUAAGCCU--A---GAUGUCCCAU ||::|| ||| | | || ||||| CATGAACCAGGAGGTGGCCCACTGGGTA Stambp; Amsh rno-miR-122a 143 168 UGUUUGUG---GUAACAGUGUGAGgu ||| |||| || | ||||| | ACACACACAGACACAGACACACACac Stambp; Amsh rno-miR-127 61 87 UC-GGUUCGAG-U--CUG-CCUAGGcu || |||||:|| | | : |||||| AGCCCAAGTTCTATTGCTGGGATCCcc Stambp; Amsh rno-miR-128a 15 35 uuUUCUCUGGCCAAGUGACACu |:|||: :|| ||||| | ccAGGAGG-TGGCCCACTGGGt Stambp; Amsh rno-miR-128b 15 35 cuUUCUCUGGCCAAGUGACACu |:|||: :|| ||||| | ccAGGAGG-TGGCCCACTGGGt Stambp; Amsh rno-miR-139 107 124 ucUGUGCACGUGACAUCu |: :|||:|||||:| ccATTTGTGTACTGTGGt Stambp; Amsh rno-miR-140* 104 125 acAGGCACCAAGAUGGGACACCAU ||| | || |:: |||||||| ccTCCAT--TTGTGTACTGTGGTA Stambp; Amsh rno-miR-152 87 121 GGGUUCAA---GACA------GU----ACGUGACu |||||||| || | || ||:|||| CCCAAGTTGTCCTCTAACCTCCATTTGTGTACTGt Stambp; Amsh rno-miR-187 137 158 gccgacguUGUGU-UCUGUGcu ||||| |||||| acatatacACACACAGACACag Stambp; Amsh rno-miR-199a 12 34 CUU-GUCCAUCAGACUUGUGACCC ||| |||| || : | ||||||| GAACCAGG-AGGTGGCCCACTGGG Stambp; Amsh rno-miR-207 3 25 uucccuccuCUCGGUCCUCUUCg || |||||||: | ctcagtcatGAACCAGGAGGTGg Stambp; Amsh rno-miR-296 8 29 uGUCCUAACUCCCCC-CCGGGa || || ||| || ||||| tCATGAACCAGGAGGTGGCCCa Stambp; Amsh rno-miR-297 124 146 gUACGUAUGUACGUGUGUAUGUa |||::|::| ||||:||||| tATGTGTGTACCCACATATACAc Stambp; Amsh rno-miR-297 146 170 GUACGUAUGU-AC-GUGUGUAUGUA || || ||| | |||||| |||| CACACAGACACAGACACACACACAT Stambp; Amsh rno-miR-299 113 136 uACAU-ACACCCUGC-CAUUUGGu |||| ||||| |:| ||: ||| gTGTACTGTGGTATGTGTGTACCc Stambp; Amsh rno-miR-324-3p 4 25 gGUC-GU-CGUGGACCCCGUCACC ||| || | ||| || :|||| tCAGTCATGAACC--AGGAGGTGG Stambp; Amsh rno-miR-324-5p 59 86 UGU-GGUUACGGGAU--C--CCCUACGc ||| || | |::||| | ||||| | ACAGCCCAAGTTCTATTGCTGGGATCCc Stambp; Amsh rno-miR-326 15 35 uGACCUCCUUCCCGGGU--CUCc | ||||| |||||| |:| cCAGGAGG--TGGCCCACTGGGt Stambp; Amsh rno-miR-331 1 23 aAGA-UC-CUAUCCGGGUCC-CCg ||| || || | ||||| || aTCTCAGTCAT-GAACCAGGAGGt Stambp; Amsh rno-miR-346 18 40 uCUCCGUCCGUGAG-UCCGUCUGU ||||: ||| | | :||:| ||| gGAGGT-GGCCCACTGGGTAAACA Stambp; Amsh rno-miR-34a 25 49 uuGUUGGUCGA-UUCUGUG-ACGGU | ||::| | || |||| ||||| gcCCACTGGGTAAACACACTTGCCA Stambp; Amsh rno-miR-351 16 35 GUCCGAGUUUCCCGAGGAGUCCCu |||| |:: ||| || | ||| CAGG---AGGTGGC-CCACTGGGt Stambp; Amsh rno-miR-363-5p 71 90 uuUAACGUAGCACUAGGUGGGc ||||| :| ||||| ||| ctATTGC--TGGGATCCCCCCa Stambp; Amsh rno-miR-370 2 23 uugGUCCAAG-GUGGGGUCGUCCg ||| || :: |||| ||| tctCAG--TCATGAACCAGGAGGt Stambp; Amsh rno-miR-449 29 49 UGGUCGAUUGUUAUGUG-ACGGU ||::| || || |||| ||||| ACTGGGTA--AACACACTTGCCA Stambp; Amsh rno-miR-1* 123 130 CC-------------------------CAUGUAUUUCUUCAUACACG |||| | :|||||||: CCAAGUUGUCCUCUAACCUCCAUUUGUGUACU----GUGGUAUGUGUG Stambp; Amsh rno-miR-101a 115 122 GAAG-------UCAAUAGUGU---------------CAUGACAU ||||:|| | |||||||: GGAUCCCCCCAAGUUGUC-CUCUAACCUCCAUUUGUGUACUGUGG Stambp; Amsh rno-miR-101b 115 122 GAAG-------UCGAUAGUGU---------------CAUGACAU ||:|:|| | |||||||: GGAUCCCCCCAAGUUGUC-CUCUAACCUCCAUUUGUGUACUGUGG Stambp; Amsh rno-miR-140* 118 125 -----------ACAGGCACCAAGAU-GG------------GACACCAU ||||| |||| || |||||||| UCCCCCCAAGUUGUCC-----UCUAACCUCCAUUUGUGUACUGUGGUAU

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Stambp RAID00025102 rno-miR-3561-5p miRNA MIMAT0017830 Stambp mRNA 171565 Prediction 0.1828 Stambp RAID00080301 rno-miR-101a-3p miRNA MIMAT0000823 Stambp mRNA 171565 Prediction 0.2202 Stambp RAID00087924 rno-miR-140-5p miRNA MIMAT0000573 Stambp mRNA 171565 Prediction 0.1828 Stambp RAID00344601 rno-miR-299b-3p miRNA MIMAT0017834 Stambp mRNA 171565 Prediction 0.1828 Stambp RAID00364648 rno-miR-190a-5p miRNA MIMAT0000865 Stambp mRNA 171565 Prediction 0.1828 Stambp RAID01212272 rno-miR-382-5p miRNA MIMAT0003201 Stambp mRNA 171565 Prediction 0.1828 Stambp RAID01214278 rno-miR-181d-5p miRNA MIMAT0005299 Stambp mRNA 171565 Prediction 0.1828 Stambp RAID01540370 rno-miR-466d miRNA MIMAT0017824 Stambp mRNA 171565 Prediction 0.1828 Stambp RAID01851360 rno-miR-140-3p miRNA MIMAT0000574 Stambp mRNA 171565 Prediction 0.1828 Stambp RAID01938862 rno-miR-101b-3p miRNA MIMAT0000615 Stambp mRNA 171565 Prediction 0.2202 Stambp RAID01964315 rno-miR-466b-5p miRNA MIMAT0005278 Stambp mRNA 171565 Prediction 0.1828 Stambp RAID02087598 rno-miR-190b-5p miRNA MIMAT0005302 Stambp mRNA 171565 Prediction 0.1828 Stambp RAID03029411 rno-miR-877 miRNA MIMAT0005285 Stambp mRNA 171565 Prediction 0.1828 Stambp RAID03246252 rno-miR-181b-5p miRNA MIMAT0000859 Stambp mRNA 171565 Prediction 0.1828 Stambp RAID03581304 rno-miR-34c-5p miRNA MIMAT0000814 Stambp mRNA 171565 Prediction 0.1828 Stambp RAID03610828 rno-miR-3064-5p miRNA MIMAT0035737 Stambp mRNA 171565 Prediction 0.1828 Stambp RAID03991845 rno-miR-34a-5p miRNA MIMAT0000815 Stambp mRNA 171565 Prediction 0.1828