DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000568 rno-miR-330* 116456 Dnajc2 agagacguccgggacaCGAAACg |||||| gaaacuucuagaacagGCUUUGa 2 8 913 935 [rn4:4:8746122-8746144:+] 0.7567 120 6 -15.10 -0.1998 MIMAT0000576 rno-miR-336 116456 Dnajc2 ucugaUCUA-UACCUUC-CCACu | || ||||||| |||| gguuaAAAUGAUGGAAGAGGUGg 2 17 355 377 [rn4:4:8740552-8740574:+] 0.7126 127 0 -20.23 -1.0472 MIMAT0000577 rno-miR-337 116456 Dnajc2 uuUCCGUAGUAUAUCCUCGACUu || :||| || ||||||| gaAGAAGUCA-AU--GAGCUGAu 2 22 482 501 [rn4:4:8742579-8742598:+] 0.7362 148 7 -14.90 -1.0953 MIMAT0000599 rno-miR-349 116456 Dnajc2 ucucCAAUUCUGUCGUCC-CGAc | | ||: |||||| ||| agcuGCUCAGG-AGCAGGUGCUg 2 19 1057 1078 [rn4:4:8746648-8746669:+] 0.6825 120 0 -19.24 -0.1541 MIMAT0000603 rno-miR-20a* 116456 Dnajc2 acauucacGAGCAUUACGUCa || ||||||| gcaagcauCUAAGAAUGCAGa 2 14 538 558 [rn4:4:8742635-8742655:+] 0.7362 141 7 -11.59 -0.6209 MIMAT0000603 rno-miR-20a* 116456 Dnajc2 acaUUCACGAGCAUUAC-GUCa |:||||| | |||| ||| agcAGGUGCU-G-AAUGCCAGc 2 19 1068 1087 [rn4:4:8746659-8746678:+] 0.6825 122 0 -15.30 -0.1259 MIMAT0003152 rno-miR-22* 116456 Dnajc2 auuucgaacggugacUUCUUGa |||||| uugauaaguuuaaaaAAGAACa 2 8 801 822 [rn4:4:8743897-8743918:+] 0.7307 120 6 -7.21 -0.1027 MIMAT0004714 rno-miR-26b* 116456 Dnajc2 cucgguUCAUU--ACCUCUUGUCc || || | ||||||| aagagcAGAAACUUCUAGAACAGg 2 17 906 929 [rn4:4:8746115-8746138:+] 0.7567 143 7 -18.94 -1.0403 MIMAT0005445 rno-miR-29b-1* 116456 Dnajc2 uuuagauuuggUGGUAUACUUu |::||||||| agucauugcuaAUUAUAUGAAc 2 12 670 691 [rn4:4:8743634-8743655:+] 0.7716 147 7 -11.10 -1.2133 MIMAT0004720 rno-miR-30e* 116456 Dnajc2 cgACAUUUGUAGGC-UG-ACUUUc || :|| | |:| || ||||| agUGGGAAAAGCUGCACUUGAAAa 2 21 451 474 [rn4:4:8740886-8740909:+] 0.6374 123 0 -10.72 -0.9223 MIMAT0004722 rno-miR-30d* 116456 Dnajc2 cguCGUUUGUAGAC-UG-ACUUUc | :|| | ||| || ||||| aguGGGAAAAGCUGCACUUGAAAa 2 20 451 474 [rn4:4:8740886-8740909:+] 0.6374 122 0 -12.39 -0.9223 MIMAT0000809 rno-miR-30a* 116456 Dnajc2 cgACGUUUGUAGGC-UG-ACUUUc || :|| | |:| || ||||| agUGGGAAAAGCUGCACUUGAAAa 2 21 451 474 [rn4:4:8740886-8740909:+] 0.6374 123 0 -10.44 -0.9223 MIMAT0000813 rno-miR-34b 116456 Dnajc2 guuaguCGAUUAAUGUGACGGau |: || : |||||| ucugguGUCAAAAGAACUGCCaa 3 18 704 726 [rn4:4:8743668-8743690:+] 0.7716 125 0 -11.38 -0.2058 MIMAT0004727 rno-miR-106b* 116456 Dnajc2 cgucGUUCAUGGGUGUCACGCc ||:| |: |||||||| cccuCAGG--CUGACAGUGCGg 2 19 832 851 [rn4:4:8743928-8743947:+] 0.7307 151 7 -24.26 -0.2496 MIMAT0004728 rno-miR-124* 116456 Dnajc2 uaguuccaggcgACACUUGUGc | ||||||: cauugcuaauuaUAUGAACAUa 2 11 673 694 [rn4:4:8743637-8743658:+] 0.7716 126 0 -8.80 -0.2904 MIMAT0000894 rno-miR-291a-5p 116456 Dnajc2 ucucucccggaggugAAACUAc |||||| auuaacaaaaaggcaUUUGAUa 2 8 785 806 [rn4:4:8743881-8743902:+] 0.7307 120 6 -6.90 -0.1481 MIMAT0000899 rno-miR-297 116456 Dnajc2 guacguAUGUACGUGUGUAUGUa ||:||| | ||||||| gcuaauUAUAUG-A-ACAUACAu 2 18 677 697 [rn4:4:8743641-8743661:+] 0.7716 153 7 -15.87 -1.1922 MIMAT0001320 rno-miR-421 116456 Dnajc2 guUGUUUGUAAAUUACUCCGg | ||: | | ||||||| gaAGAAGGACUGCAUGAGGCg 2 20 1000 1020 [rn4:4:8746209-8746229:+] 0.7567 151 7 -11.67 -0.2590 MIMAT0001320 rno-miR-421 116456 Dnajc2 guuguuuguaaaUUACUCCGg |||||||| cacuucucggacAAUGAGGCa 2 10 329 349 [rn4:4:8740526-8740546:+] 0.7126 145 7 -16.76 -0.7939 MIMAT0003116 rno-miR-501 116456 Dnajc2 aaAGUGGGUCCCU-GUUUCCUaa | :|| || | |||||| guUGGCCAAGAAAGAAAAGGAga 3 21 244 266 [rn4:4:8736679-8736701:+] 0.8050 127 0 -11.16 -0.1978 MIMAT0003198 rno-miR-376a 116456 Dnajc2 ugcaccuaaaAGGAGAUGCUa || ||||||| aauacuggcaUCAUCUACGAg 2 12 427 447 [rn4:4:8740862-8740882:+] 0.6374 147 7 -14.03 -0.5389 MIMAT0003380 rno-miR-505 116456 Dnajc2 ccUUUGGUCGUUCAC-AACUg ||:|| | |||| |||| gcAAGCCUAC-AGUGCUUGAa 2 19 404 423 [rn4:4:8740601-8740605,8740844-8740858:+] 0.6750 120 0 -13.40 -0.7387 MIMAT0005281 rno-miR-871 116456 Dnajc2 acACUGGCCGU-GGUUAGAC-UUAu ||::| | | ::||||| ||| acUGGUCAGAAGAUGAUCUGCAAUu 2 22 594 618 [rn4:4:8742691-8742715:+] 0.7362 120 0 -12.43 -1.1918 MIMAT0005283 rno-miR-872* 116456 Dnajc2 uccUCCGAUGACGUUAUC-AAGu |||: |||| |||| ||| ugaAGGUCCCUGC-AUAGAUUCc 2 20 868 889 [rn4:4:8743964-8743968,8746082-8746098:+] 0.7437 125 0 -14.80 -0.5383 MIMAT0005287 rno-miR-879 116456 Dnajc2 ccgaAUCUCGAUAUUCGGAGa || ||||| ||||||| uuggUAAAGCUAAAAGCCUCc 2 18 735 755 [rn4:4:8743699-8743719:+] 0.7716 169 7 -19.14 -1.1783 MIMAT0005322 rno-miR-532-5p 116456 Dnajc2 ugucaggaugugagUUCCGUAc ||||||| augacauuaacaaaAAGGCAUu 2 9 780 801 [rn4:4:8743876-8743897:+] 0.7307 140 7 -12.21 -1.2577 MIMAT0005322 rno-miR-532-5p 116456 Dnajc2 ugucaggaugugagUUCCGUac |||||| gccauuaaaaaggaAAGGCAga 3 9 278 299 [rn4:4:8736713-8736734:+] 0.8050 120 0 -9.81 -0.3300 MIMAT0005323 rno-miR-532-3p 116456 Dnajc2 acGUUCGGAACCCACACCCUCc ||| | | ||||||| guCAACCGGCAGAAGUGGGAGu 2 21 562 583 [rn4:4:8742659-8742680:+] 0.7362 144 7 -16.55 -0.5162 MIMAT0005333 rno-miR-742 116456 Dnajc2 aaauggguuguaccaCCGAAAg |||||| gaaacuucuagaacaGGCUUUg 2 8 913 934 [rn4:4:8746122-8746143:+] 0.7567 120 6 -9.02 -0.1175 MIMAT0005337 rno-miR-760-3p 116456 Dnajc2 aggGGUGUCUGG--GUCUCGGc |:: | :|| ||||||| gugCUGAAUGCCAGCAGAGCCa 2 18 1073 1094 [rn4:4:8746664-8746685:+] 0.6825 144 7 -15.22 -0.5309 MIMAT0012825 rno-miR-105 116456 Dnajc2 ugGUGUCUGUAGACUCGUGAAc | |:| | | || |||||| guCUCGGUC-UGUGUGCACUUu 2 21 13 33 [rn4:4:8746706-8746726:+] 0.6825 126 6 -15.08 -0.1580 MIMAT0012828 rno-miR-362 116456 Dnajc2 uaAGUGUGGAUCCAAGGUUCCUAa |:||| :|: | |||||||| gcUUACAGUUGUGACCCAAGGAUa 2 23 53 76 [rn4:4:8735665-8735688:+] 0.6295 166 7 -19.49 -0.9381 MIMAT0012829 rno-miR-511 116456 Dnajc2 acUCACGUCUCGUUUUCCGUa | | | || :||||||| ccAUUAAAAAG-GAAAGGCAg 2 20 279 298 [rn4:4:8736714-8736733:+] 0.8050 145 7 -9.98 -0.9377 MIMAT0012829 rno-miR-511 116456 Dnajc2 acucacgucucgUUUUCCGUa |||||||| augacauuaacaAAAAGGCAu 2 10 780 800 [rn4:4:8743876-8743896:+] 0.7307 145 7 -11.71 -1.2546 MIMAT0012831 rno-miR-544 116456 Dnajc2 cucgaacgaUUUUUACGUCUUa ::||| |||||| cauuaaaaaGGAAAGGCAGAAa 2 14 280 301 [rn4:4:8736715-8736736:+] 0.8050 125 6 -10.04 -0.2671 MIMAT0012831 rno-miR-544 116456 Dnajc2 cucgaacgaUUUUUACGUCUUa |:||: |||||| uuggacaacAGAAGAGCAGAAa 2 14 895 916 [rn4:4:8746104-8746125:+] 0.7567 125 6 -9.76 -0.1051 MIMAT0012845 rno-miR-935 116456 Dnajc2 cgccaUCGCCUUCG--CCAUUGAcc :|| ||| | |||||| ggaaaGGCAGAAACUUCGUAACUca 3 19 289 313 [rn4:4:8736724-8736748:+] 0.8050 129 0 -8.51 -0.1614 MIMAT0012849 rno-miR-295 116456 Dnajc2 cuucacacggggUGUAAACUca :||||||| auuaacaaaaagGCAUUUGAua 3 11 785 806 [rn4:4:8743881-8743902:+] 0.7307 126 0 -7.65 -0.1210 MIMAT0012852 rno-miR-667 116456 Dnajc2 gaacccgacccaccguCCACAGu |||||| cauacauucuucuucuGGUGUCa 2 8 691 713 [rn4:4:8743655-8743677:+] 0.7716 120 6 -12.57 -0.2741 MIMAT0012860 rno-miR-496 116456 Dnajc2 cucuaaccGGUACA-UUAUGAGu || || ||||||| aaaacauaCCCGGUAAAUACUCc 2 15 935 957 [rn4:4:8746144-8746166:+] 0.7567 145 7 -12.32 -0.7529 MIMAT0012860 rno-miR-496 116456 Dnajc2 cucuaaccgguacaUUAUGAgu |||||| auaauaaaacucaaAAUACUgu 3 9 1137 1158 [rn4:4:8746728-8746749:+] 0.6825 120 0 -5.38 -0.3065 MIMAT0000552 rno-miR-301a 116456 Dnajc2 cgaaacuguuaugauaACGUGAc |||||| gcggucucggucugugUGCACUu 2 8 10 32 [rn4:4:8746703-8746725:+] 0.6825 120 6 -14.56 -0.1754 MIMAT0000579 rno-miR-148b-3p 116456 Dnajc2 uguuuCAAGACACUACGUGAcu | |||||| |||||| gucucGGUCUGUG-UGCACUuu 3 18 13 33 [rn4:4:8746706-8746726:+] 0.6825 143 0 -17.59 -0.1157 MIMAT0000596 rno-miR-346 116456 Dnajc2 ucuccGUCCGUGAGUCCGUCUGu |:| || | |||||||| cuucuCGGACAAUGAGGCAGACc 2 19 331 353 [rn4:4:8740528-8740550:+] 0.7126 162 7 -19.86 -0.6866 MIMAT0000596 rno-miR-346 116456 Dnajc2 ucuccguccgugagUCCGUCUgu ||||||| ccauuaaaaaggaaAGGCAGAaa 3 10 279 301 [rn4:4:8736714-8736736:+] 0.8050 125 0 -15.96 -0.2276 MIMAT0000600 rno-miR-129 116456 Dnajc2 cguucgggucuggcGUUUUUc |||||| aacuugacccucacCAAAAAg 2 8 759 779 [rn4:4:8743723-8743728,8743861-8743875:+] 0.7512 120 6 -13.90 -0.1389 MIMAT0000600 rno-miR-129 116456 Dnajc2 cguucgggucuggcGUUUUUc |||||| aaagaugacauuaaCAAAAAg 2 8 776 796 [rn4:4:8743872-8743892:+] 0.7307 120 6 -10.98 -0.1294 MIMAT0000602 rno-miR-20a 116456 Dnajc2 gauGGACGUGAUAUUCGUGAAAu |: | ||:|: ||||||| gguCUCGGUCUGUGUGCACUUUu 2 21 1114 1136 [rn4:4:8746705-8746727:+] 0.6825 156 7 -16.27 -0.7822 MIMAT0000602 rno-miR-20a 116456 Dnajc2 gauggacgugauauuCGUGAAau |||||| gaagugggaaaagcuGCACUUga 3 9 449 471 [rn4:4:8740884-8740906:+] 0.6374 120 0 -10.81 -0.1118 MIMAT0000602 rno-miR-20a 116456 Dnajc2 gauGGACGUGAUAUUCGUGAAAu |: | ||:|: ||||||| gguCUCGGUCUGUGUGCACUUUu 2 21 12 34 [rn4:4:8746705-8746727:+] 0.6825 156 7 -16.27 -1.2901 MIMAT0000611 rno-miR-135b 116456 Dnajc2 aguguaucCUUACUUUUCGGUAu ||| ||||||||| gagauccaGAA--AAAAGCCAUu 2 16 263 283 [rn4:4:8736698-8736718:+] 0.8050 152 7 -11.57 -1.2580 MIMAT0000615 rno-miR-101b 116456 Dnajc2 aagucgauAGUGUCAUGACAu ||| | |||||| aauaaaacUCAAAAUACUGU- 2 14 1139 1158 [rn4:4:8746730-8746749:+] 0.6825 125 6 -7.01 -0.3586 MIMAT0000615 rno-miR-101b 116456 Dnajc2 aagucgauAGUGUCAUGACAu ||| | |||||| aauaaaacUCAAAAUACUGUa 2 14 37 57 [rn4:4:8746730-8746750:+] 0.6825 125 6 -9.65 -0.1994 MIMAT0000781 rno-miR-9 116456 Dnajc2 aguaugucgaUCUAUUGGUUUCu ||: |:|||||| aggaaggaacAGGAAGCCAAAGa 2 14 143 165 [rn4:4:8735755-8735777:+] 0.6539 137 6 -15.51 -0.1081 MIMAT0000781 rno-miR-9 116456 Dnajc2 aguaUGUCGAUCU---AUUGGUUUcu | | || || | |||||| uccaAAAACUUGACCCUCACCAAAaa 3 20 753 778 [rn4:4:8743717-8743728,8743861-8743874:+] 0.7512 126 0 -5.40 -0.1096 MIMAT0000781 rno-miR-9 116456 Dnajc2 aguaugucgaucuauUGGUUUCu :|||||| ggugucaaaagaacuGCCAAAGa 2 9 707 729 [rn4:4:8743671-8743693:+] 0.7716 124 6 -12.33 -0.2485 MIMAT0000786 rno-miR-17-5p 116456 Dnajc2 gauGGACGUGACAUUCGUGAAAc |: | ||||: ||||||| gguCUCGGUCUGUGUGCACUUUu 2 21 1114 1136 [rn4:4:8746705-8746727:+] 0.6825 160 7 -17.36 -0.7785 MIMAT0000786 rno-miR-17-5p 116456 Dnajc2 gauggacgugacauuCGUGAAac |||||| gaagugggaaaagcuGCACUUga 3 9 449 471 [rn4:4:8740884-8740906:+] 0.6374 120 0 -10.81 -0.1118 MIMAT0000786 rno-miR-17-5p 116456 Dnajc2 gauGGACGUGACAUUCGUGAAAc |: | ||||: ||||||| gguCUCGGUCUGUGUGCACUUUu 2 21 12 34 [rn4:4:8746705-8746727:+] 0.6825 160 7 -17.36 -1.2893 MIMAT0000795 rno-miR-25 116456 Dnajc2 agUCUGGC-UCUGUU-CACGUUAc :| | | |||::| |||||| cuGGUCAGAAGAUGAUCUGCAAUu 2 21 595 618 [rn4:4:8742692-8742715:+] 0.7362 122 6 -13.59 -0.1827 MIMAT0000796 rno-miR-26a 116456 Dnajc2 ucggauaggaccuaaUGAACUu |||||| agugggaaaagcugcACUUGAa 2 8 451 472 [rn4:4:8740886-8740907:+] 0.6374 120 6 -10.02 -0.1074 MIMAT0000797 rno-miR-26b 116456 Dnajc2 uggauaggacuuaaUGAACUu |||||| gugggaaaagcugcACUUGAa 2 8 452 472 [rn4:4:8740887-8740907:+] 0.6374 120 6 -10.08 -0.1074 MIMAT0000811 rno-miR-32 116456 Dnajc2 acguugaaUC-AUUACACGUUAu || |:|| |||||| uggucagaAGAUGAUCUGCAAUu 2 15 596 618 [rn4:4:8742693-8742715:+] 0.7362 125 6 -10.81 -0.1844 MIMAT0000814 rno-miR-34c 116456 Dnajc2 cguuagucgauugaugUGACGGa |||||| uucuggugucaaaagaACUGCCa 2 8 703 725 [rn4:4:8743667-8743689:+] 0.7716 120 6 -10.47 -0.2425 MIMAT0000815 rno-miR-34a 116456 Dnajc2 uguuggucgauucugUGACGGu |||||| ucuggugucaaaagaACUGCCa 2 8 704 725 [rn4:4:8743668-8743689:+] 0.7716 120 6 -17.77 -0.2469 MIMAT0000816 rno-miR-92a 116456 Dnajc2 guCCGGCC--CUGUU-CACGUUAu ||:| | ||::| |||||| cuGGUCAGAAGAUGAUCUGCAAUu 2 20 595 618 [rn4:4:8742692-8742715:+] 0.7362 121 6 -10.52 -0.1862 MIMAT0000817 rno-miR-93 116456 Dnajc2 gauGGACGUGCUUGUCGUGAAAc :| |: :| :: ||||||| gucUCGGUCUGUGU-GCACUUUu 2 21 1115 1136 [rn4:4:8746706-8746727:+] 0.6825 142 7 -12.56 -0.7612 MIMAT0000817 rno-miR-93 116456 Dnajc2 gauggaCGUGCUUGUCGUGAAac | | |:| |||||| gaagugGGAAAAGCUGCACUUga 3 18 449 471 [rn4:4:8740884-8740906:+] 0.6374 129 0 -12.02 -0.1118 MIMAT0000817 rno-miR-93 116456 Dnajc2 gauGGACGUGCUUGUCGUGAAAc :| |: :| :: ||||||| gucUCGGUCUGUGU-GCACUUUu 2 21 13 34 [rn4:4:8746706-8746727:+] 0.6825 142 7 -12.56 -1.2854 MIMAT0000818 rno-miR-96 116456 Dnajc2 ucguuuuuacacgaucACGGUUu |||||| cuggugucaaaagaacUGCCAAa 2 8 705 727 [rn4:4:8743669-8743691:+] 0.7716 120 6 -13.48 -0.2306 MIMAT0000823 rno-miR-101a 116456 Dnajc2 aagucaauAGUGUCAUGACAu ||| | |||||| aauaaaacUCAAAAUACUGU- 2 14 1139 1158 [rn4:4:8746730-8746749:+] 0.6825 125 6 -7.01 -0.3615 MIMAT0000823 rno-miR-101a 116456 Dnajc2 aagucaauAGUGUCAUGACAu ||| | |||||| aauaaaacUCAAAAUACUGUa 2 14 37 57 [rn4:4:8746730-8746750:+] 0.6825 125 6 -9.65 -0.2013 MIMAT0000825 rno-miR-106b 116456 Dnajc2 uagacguGACAGUCGUGAAAu |||| ||||||| ucucgguCUGUGUGCACUUUu 2 15 1116 1136 [rn4:4:8746707-8746727:+] 0.6825 154 7 -15.63 -0.7785 MIMAT0000825 rno-miR-106b 116456 Dnajc2 uagacgugacaGUCGUGAAau | |||||| agugggaaaagCUGCACUUga 3 11 451 471 [rn4:4:8740886-8740906:+] 0.6374 122 0 -10.34 -0.1118 MIMAT0000825 rno-miR-106b 116456 Dnajc2 uagacguGACAGUCGUGAAAu |||| ||||||| ucucgguCUGUGUGCACUUUu 2 15 14 34 [rn4:4:8746707-8746727:+] 0.6825 154 7 -15.63 -1.2893 MIMAT0000836 rno-miR-130a 116456 Dnajc2 uacgggaaaauuguaACGUGAc |||||| cggucucggucugugUGCACUu 2 8 11 32 [rn4:4:8746704-8746725:+] 0.6825 120 6 -10.56 -0.1754 MIMAT0000837 rno-miR-130b 116456 Dnajc2 uacgggaaaguaguaACGUGAc |||||| cggucucggucugugUGCACUu 2 8 11 32 [rn4:4:8746704-8746725:+] 0.6825 120 6 -13.09 -0.1737 MIMAT0000841 rno-miR-135a 116456 Dnajc2 aguguauccUUAUUUUUCGGUAu |: |||||||||| aggagauccAGAAAAAAGCCAUu 2 15 261 283 [rn4:4:8736696-8736718:+] 0.8050 158 7 -15.12 -1.2580 MIMAT0000845 rno-miR-139-5p 116456 Dnajc2 gaccucugugcacGUGACAUcu :|||||| auaaaacucaaaaUACUGUAca 3 10 38 59 [rn4:4:8746731-8746752:+] 0.6825 121 0 -7.26 -1.1727 MIMAT0000850 rno-miR-144 116456 Dnajc2 ucaUGUAGUAGAUAUGACAu || ||| ||||||| aaaAC-UCA-AAAUACUGU- 2 18 1142 1158 [rn4:4:8746733-8746749:+] 0.6825 141 7 -9.22 -1.3083 MIMAT0000850 rno-miR-144 116456 Dnajc2 ucaUGUAGUAGAUAUGACAu || ||| ||||||| aaaAC-UCA-AAAUACUGUa 2 18 40 57 [rn4:4:8746733-8746750:+] 0.6825 141 7 -11.86 -1.2790 MIMAT0000851 rno-miR-145 116456 Dnajc2 ucccUAAGGACCCUUUUGACCUg | || || |:||||||| cguaACUCAUGCAAGAACUGGAa 2 20 305 327 [rn4:4:8736740-8736754,8740517-8740524:+] 0.7588 159 7 -13.68 -1.0600 MIMAT0000854 rno-miR-152 116456 Dnajc2 gguuCAAGACAGUACGUGAcu | ||||| :|||||| ucucGGUCUGU-GUGCACUuu 3 18 14 33 [rn4:4:8746707-8746726:+] 0.6825 139 0 -16.61 -0.1249 MIMAT0000855 rno-miR-153 116456 Dnajc2 cuagUGAAAACACUGA-UACGUu || || || ||| ||||| agaaAC-UUCGUAACUCAUGCAa 2 19 297 318 [rn4:4:8736732-8736753:+] 0.8050 124 0 -11.98 -1.1147 MIMAT0000857 rno-miR-181c 116456 Dnajc2 ugagUGGCUGUC-C-AACUUACaa :|| |||| | ||||||| gcaaGCCUACAGUGCUUGAAUGaa 3 19 404 427 [rn4:4:8740601-8740605,8740844-8740862:+] 0.6750 140 0 -16.67 -0.1599 MIMAT0000858 rno-miR-181a 116456 Dnajc2 ugagUGGCUGUCGC-AACUUACaa :|| ||||:| ||||||| gcaaGCCUACAGUGCUUGAAUGaa 3 20 404 427 [rn4:4:8740601-8740605,8740844-8740862:+] 0.6750 150 0 -21.07 -0.1524 MIMAT0000859 rno-miR-181b 116456 Dnajc2 ugggUGGCUGUCGU-UACUUACaa :|| ||||:: |||||| gcaaGCCUACAGUGCUUGAAUGaa 3 20 404 427 [rn4:4:8740601-8740605,8740844-8740862:+] 0.6750 138 0 -17.94 -0.1524 MIMAT0000879 rno-miR-206 116456 Dnajc2 gguGUGUGAAGGAAUGUAAGGu :|:|: | |||||||: aauUAUAUGAACAUACAUUCUu 2 20 680 701 [rn4:4:8743644-8743665:+] 0.7716 135 0 -11.25 -0.1245 MIMAT0000882 rno-miR-211 116456 Dnajc2 ucCGUUUCCUACUGUUUCC-CUu || ||| | || ||||| || ugGCCAAGAAAGA-AAAGGAGAu 2 21 246 267 [rn4:4:8736681-8736702:+] 0.8050 126 0 -12.18 -1.0732 MIMAT0000895 rno-miR-291a-3p 116456 Dnajc2 ccguguguuucaccuuCGUGAAa |||||| cggucucggucuguguGCACUUu 2 8 11 33 [rn4:4:8746704-8746726:+] 0.6825 120 6 -15.69 -0.1595 MIMAT0001543 rno-miR-449a 116456 Dnajc2 ugGUCGAUUGUUAU-GUGACGGu | | |: ||| | |||||| uuCUGGUGUCAAAAGAACUGCCa 2 21 703 725 [rn4:4:8743667-8743689:+] 0.7716 123 6 -18.34 -0.2425 MIMAT0001549 rno-miR-365 116456 Dnajc2 uauuccuaaaaauccCCGUAAu |||||| ugacauuaacaaaaaGGCAUUu 2 8 781 802 [rn4:4:8743877-8743898:+] 0.7307 120 6 -7.31 -0.2011 MIMAT0001626 rno-miR-431 116456 Dnajc2 acguacugccggacGUUCUGu |||||| auguuagacguugaCAAGACu 2 8 10 30 [rn4:4:8735622-8735642:+] 0.6295 120 6 -16.19 -0.2560 MIMAT0003123 rno-miR-377 116456 Dnajc2 ggUUUUCAACGG--AAACACACua |:: | | :| | |||||| gcAGGCGGUCUCGGUCUGUGUGca 3 21 6 29 [rn4:4:8746699-8746722:+] 0.6825 123 0 -12.84 -0.1280 MIMAT0003125 rno-miR-1 116456 Dnajc2 uaugugugaagaaAUGUAAGGu |||||||: aauuauaugaacaUACAUUCUu 2 10 680 701 [rn4:4:8743644-8743665:+] 0.7716 129 0 -9.94 -0.1245 MIMAT0003199 rno-miR-381 116456 Dnajc2 cucuCGAACGGGAACAUAu |: ||| ||| ||| gucuGUGUGCACUUUUAUa 2 16 19 37 [rn4:4:8746712-8746730:+] 0.6825 123 0 -6.31 -0.1353 MIMAT0003203 rno-miR-485 116456 Dnajc2 cuuaaguagugccggUCGGAGa |||||| auugguaaagcuaaaAGCCUCc 2 8 734 755 [rn4:4:8743698-8743719:+] 0.7716 120 6 -12.12 -0.2419 MIMAT0003210 rno-miR-363 116456 Dnajc2 auGUCUACCUAUGGCACGUUAa |||| |||: : |||||| guCAGA-AGAUGAUCUGCAAUu 2 21 598 618 [rn4:4:8742695-8742715:+] 0.7362 130 6 -15.12 -0.1827 MIMAT0003211 rno-miR-20b-5p 116456 Dnajc2 uggacguGAUACUCGUGAAAc ||:|| ||||||| ucucgguCUGUGUGCACUUUu 2 15 1116 1136 [rn4:4:8746707-8746727:+] 0.6825 158 7 -16.55 -0.7822 MIMAT0003211 rno-miR-20b-5p 116456 Dnajc2 uggacgugauacuCGUGAAac |||||| agugggaaaagcuGCACUUga 3 9 451 471 [rn4:4:8740886-8740906:+] 0.6374 120 0 -13.28 -0.1118 MIMAT0003211 rno-miR-20b-5p 116456 Dnajc2 uggacguGAUACUCGUGAAAc ||:|| ||||||| ucucgguCUGUGUGCACUUUu 2 15 14 34 [rn4:4:8746707-8746727:+] 0.6825 158 7 -16.55 -1.2901 MIMAT0005299 rno-miR-181d 116456 Dnajc2 ugggUGGCUGUUGU-UACUUACaa :|| |||::: |||||| gcaaGCCUACAGUGCUUGAAUGaa 3 20 404 427 [rn4:4:8740601-8740605,8740844-8740862:+] 0.6750 134 0 -16.22 -0.1539 MIMAT0005300 rno-miR-182 116456 Dnajc2 gccacacucaagaugguaACGGUUu |||||| uucuggugucaaaagaacUGCCAAa 2 8 703 727 [rn4:4:8743667-8743691:+] 0.7716 120 6 -15.59 -0.2264 MIMAT0005304 rno-miR-301b 116456 Dnajc2 cgaaacuguuaugguaACGUGAc |||||| gcggucucggucugugUGCACUu 2 8 10 32 [rn4:4:8746703-8746725:+] 0.6825 120 6 -12.09 -0.1754 MIMAT0005311 rno-miR-410 116456 Dnajc2 ugUCCGGUAGACA-CAAUAUAa | |:|||: | |||||| ggAAGUCAUUGCUAAUUAUAUg 2 20 667 688 [rn4:4:8743631-8743652:+] 0.7716 122 6 -7.55 -0.1684 MIMAT0005314 rno-miR-425 116456 Dnajc2 aguugcccucacuAGCACAGUaa | |||||| uacauucuucuucUGGUGUCAaa 3 11 693 715 [rn4:4:8743657-8743679:+] 0.7716 122 0 -7.34 -0.1412 MIMAT0005340 rno-miR-92b 116456 Dnajc2 ccuCCGGCC--CUGCU-CACGUUAu ||:| | ||:|| |||||| acuGGUCAGAAGAUGAUCUGCAAUu 2 20 594 618 [rn4:4:8742691-8742715:+] 0.7362 125 6 -15.81 -0.1862

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G060803 Dnajc2 Rattus norvegicus 116456

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Dnajc2; rCG_24365 rno-miR-106b 12 35 -UAGA-CGUGACAGUCGUGAAAU :||| | |||| ||||||| GGUCUCGGUCUGUGUGCACUUUU Dnajc2; rCG_24365 rno-miR-122a 47 67 UGUUUGUGGUAACAGUGUGAGGU |||:||::| ||||| ||| -AAAAUACUGUA--CACACCCCA Dnajc2; rCG_24365 rno-miR-144 20 59 -GAU-CAUGU---------------AGUAGAUAUGACAU- ||: ||:|| ||| |||||||| UCUGUGUGCACUUUUAUAAUAAAACUCAAA-AUACUGUAC Dnajc2; rCG_24365 rno-miR-148b 5 33 -UGUU--UCA-----AGACACUACGUGACU :||: :|| |||||| |||||| GGCAGGCGGUCUCGGUCUGUG-UGCACUU- Dnajc2; rCG_24365 rno-miR-152 14 33 -GGGUUCAAGACAGUACGUGACU |:|:: ||||| :|||||| UCUCGG--UCUGU-GUGCACUU- Dnajc2; rCG_24365 rno-miR-17 9 35 -UGAU-GGACGUGACAUUCGUGAAAC :| |: | ||||: ||||||| GGCGGUCUCGGUCUGUGUGCACUUUU Dnajc2; rCG_24365 rno-miR-18 12 35 AUAGA-CGUGAUCUACGUGGAAU :||| | ||: :|||||:|| GGUCUCGGUCUGUGUGCACUUUU Dnajc2; rCG_24365 rno-miR-20a 13 35 GAUGGA-CGUGAUAUUCGUGAAAU :|| | ||:|: ||||||| --GUCUCGGUCUGUGUGCACUUUU Dnajc2; rCG_24365 rno-miR-20b 13 35 UGGA-CGUGAUACUCGUGAAAC :|| | ||:|| ||||||| GUCUCGGUCUGUGUGCACUUUU Dnajc2; rCG_24365 rno-miR-291-3p 4 35 -CCGUGUGUUU--------CACCUUCGUGAAA- |||| :|:: ||| ||||||| GGGCAGGCGGUCUCGGUCUGUGU--GCACUUUU Dnajc2; rCG_24365 rno-miR-29c* 4 23 CUUGUGGUCCUCUUUAGCCAGU : |||| |: |||||| ---GGGCAGGCGGUCUCGGUCU Dnajc2; rCG_24365 rno-miR-301 1 33 UACGAAACUGUUAU---------GAUA-ACGUGAC || |:||: ||:| |||||| -CGCG--GGCAGGCGGUCUCGGUCUGUGUGCACUU Dnajc2; rCG_24365 rno-miR-344 1 23 -UGCCAGUCCGAAACC-GAUCUAGU :||| ||||| || || |:|| CGCGGGCAGGC---GGUCUCGGUCU Dnajc2; rCG_24365 rno-miR-346 3 31 UCUCCGUCCGU--GAGUC---CGUCUGU- :|||||||: |||:| |: :|| -CGGGCAGGCGGUCUCGGUCUGUGUGCAC Dnajc2; rCG_24365 rno-miR-485 1 19 CUUAAGUAGUGCCG----GUCGGAGA |:||| |:|:||| --------CGCGGGCAGGCGGUCUCG Dnajc2; rCG_24365 rno-miR-92 6 31 -GUCCGGC----CCUGUU-CACGUUAU ||||| | || | ||||| GCAGGCGGUCUCGGUCUGUGUGCAC-- Dnajc2; rCG_24365 rno-miR-106b 13 34 uAGA-CGUGACAGUCGUGAAAu ||| | |||| ||||||| gTCTCGGTCTGTGTGCACTTTt Dnajc2; rCG_24365 rno-miR-122a 46 66 ugUUUGUGGUAACA-GUGUGAGGU |||:|| ||| ||||| ||| caAAATAC---TGTACACACCCCA Dnajc2; rCG_24365 rno-miR-148b 13 33 uguuuCAAGACACUACGUGAcu | |||||| |||||| gtctcGGTCTGTG-TGCACTtt Dnajc2; rCG_24365 rno-miR-152 15 33 GGGUUCAAGACAGUACGUGAcu |:| | ||||| :|||||| CTC--GGTCTGT-GTGCACTtt Dnajc2; rCG_24365 rno-miR-17 10 34 uGAUGGA-CGUGACAUUCGUGAAAc | ::|| | ||||: ||||||| gCGGTCTCGGTCTGTGTGCACTTTt Dnajc2; rCG_24365 rno-miR-20a 11 34 GAUGGA-CGUGAUAUUCGUGAAAu | ::|| | ||:|: ||||||| CGGTCTCGGTCTGTGTGCACTTTt Dnajc2; rCG_24365 rno-miR-20b 14 34 uGGACGUGAUACUCGUGAAAc |: | ||:|| ||||||| tCTCGGTCTGTGTGCACTTTt Dnajc2; rCG_24365 rno-miR-291-3p 9 33 CCGU--GUGUUUCACCUUCGUGAAA |||: | |:: || : ||||||| GGCGGTCTCGGTCTGTGTGCACTTT Dnajc2; rCG_24365 rno-miR-29c* 1 22 cuugugGUCCUCUUUAGCCAGu |||| |: |||||| cgcgggCAGGCGGTCTCGGTCt Dnajc2; rCG_24365 rno-miR-301 8 32 UACGAAACUGUUAUGAUA-ACGUGAc | || | |::| ||:| |||||| AGGCGGTCTCGGT-CTGTGTGCACTt Dnajc2; rCG_24365 rno-miR-342 1 30 cuGCCC--ACGCUA-A---AGACACACucu |||| |||:| | |||||||| cgCGGGCAGGCGGTCTCGGTCTGTGTGcac Dnajc2; rCG_24365 rno-miR-344 2 22 uGCCAGUCCGAAACC-GAUCUAGu ||| ||||| || || |:|| gCGGGCAGGC---GGTCTCGGTCt Dnajc2; rCG_24365 rno-miR-346 1 12 ucuccguccguGAGUCCGUCUGu | |:|||||:| -----------CGCGGGCAGGCg Dnajc2; rCG_24365 rno-miR-92 7 32 GUCCG-----GCCCUGUUCACGUUAu ||||| ||| :: ||||| | CAGGCGGTCTCGGTCTGTGTGCACTt Dnajc2; rCG_24365 rno-miR-144 50 57 ------GAU-CAUGU---------------AGUAGAUAUGACAU ||: ||:|| ||| |||||||| CUCGGUCUGUGUGCACUUUUAUAAUAAAACUCAAA-AUACUGUAC

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Dnajc2 RAID00238408 rno-miR-20a-5p miRNA MIMAT0000602 Dnajc2 mRNA 116456 Prediction 0.1828 Dnajc2 RAID00317650 rno-miR-17-5p miRNA MIMAT0000786 Dnajc2 mRNA 116456 Prediction 0.1828 Dnajc2 RAID00460647 rno-miR-449a-5p miRNA MIMAT0001543 Dnajc2 mRNA 116456 Prediction 0.1828 Dnajc2 RAID00478784 rno-miR-145-5p miRNA MIMAT0000851 Dnajc2 mRNA 116456 Prediction 0.1828 Dnajc2 RAID00489048 rno-miR-139-5p miRNA MIMAT0000845 Dnajc2 mRNA 116456 Prediction 0.1828 Dnajc2 RAID00514227 rno-miR-135b-5p miRNA MIMAT0000611 Dnajc2 mRNA 116456 Prediction 0.1828 Dnajc2 RAID00569789 rno-miR-106b-5p miRNA MIMAT0000825 Dnajc2 mRNA 116456 Prediction 0.1828 Dnajc2 RAID00948603 rno-miR-181b-5p miRNA MIMAT0000859 Dnajc2 mRNA 116456 Prediction 0.1828 Dnajc2 RAID00979071 rno-miR-130a-3p miRNA MIMAT0000836 Dnajc2 mRNA 116456 Prediction 0.1828 Dnajc2 RAID01144952 rno-miR-381-3p miRNA MIMAT0003199 Dnajc2 mRNA 116456 Prediction 0.1828 Dnajc2 RAID01147069 rno-miR-365-3p miRNA MIMAT0001549 Dnajc2 mRNA 116456 Prediction 0.1828 Dnajc2 RAID01231943 rno-miR-363-3p miRNA MIMAT0003210 Dnajc2 mRNA 116456 Prediction 0.1828 Dnajc2 RAID01243819 rno-miR-34c-5p miRNA MIMAT0000814 Dnajc2 mRNA 116456 Prediction 0.1828 Dnajc2 RAID01290414 rno-miR-340-5p miRNA MIMAT0004650 Dnajc2 mRNA 116456 Prediction 0.1828 Dnajc2 RAID01311526 rno-miR-32-5p miRNA MIMAT0000811 Dnajc2 mRNA 116456 Prediction 0.1828 Dnajc2 RAID01337266 rno-miR-425-5p miRNA MIMAT0005314 Dnajc2 mRNA 116456 Prediction 0.1828 Dnajc2 RAID01456053 rno-miR-93-5p miRNA MIMAT0000817 Dnajc2 mRNA 116456 Prediction 0.1828 Dnajc2 RAID01594255 rno-miR-485-5p miRNA MIMAT0003203 Dnajc2 mRNA 116456 Prediction 0.1828 Dnajc2 RAID01611793 rno-miR-181c-5p miRNA MIMAT0000857 Dnajc2 mRNA 116456 Prediction 0.1828 Dnajc2 RAID01657511 rno-miR-34a-5p miRNA MIMAT0000815 Dnajc2 mRNA 116456 Prediction 0.1828 Dnajc2 RAID01770213 rno-miR-431 miRNA MIMAT0001626 Dnajc2 mRNA 116456 Prediction 0.1828 Dnajc2 RAID01772590 rno-miR-129-5p miRNA MIMAT0000600 Dnajc2 mRNA 116456 Prediction 0.1828 Dnajc2 RAID01817776 rno-miR-101a-3p miRNA MIMAT0000823 Dnajc2 mRNA 116456 Prediction 0.1828 Dnajc2 RAID01893360 rno-miR-9a-5p miRNA MIMAT0000781 Dnajc2 mRNA 116456 Prediction 0.1828 Dnajc2 RAID01996073 rno-miR-181a-5p miRNA MIMAT0000858 Dnajc2 mRNA 116456 Prediction 0.1828 Dnajc2 RAID02162174 rno-miR-301b-3p miRNA MIMAT0005304 Dnajc2 mRNA 116456 Prediction 0.1828 Dnajc2 RAID02218560 rno-miR-182 miRNA MIMAT0005300 Dnajc2 mRNA 116456 Prediction 0.1828 Dnajc2 RAID02304420 rno-miR-92b-3p miRNA MIMAT0005340 Dnajc2 mRNA 116456 Prediction 0.1828 Dnajc2 RAID02401726 rno-miR-410-3p miRNA MIMAT0005311 Dnajc2 mRNA 116456 Prediction 0.1828 Dnajc2 RAID02527515 rno-miR-377-3p miRNA MIMAT0003123 Dnajc2 mRNA 116456 Prediction 0.1828 Dnajc2 RAID02699037 rno-miR-135a-5p miRNA MIMAT0000841 Dnajc2 mRNA 116456 Prediction 0.1828 Dnajc2 RAID02732420 rno-miR-211-5p miRNA MIMAT0000882 Dnajc2 mRNA 116456 Prediction 0.1828 Dnajc2 RAID02755354 rno-miR-291a-3p miRNA MIMAT0000895 Dnajc2 mRNA 116456 Prediction 0.1828 Dnajc2 RAID02834076 rno-miR-206-3p miRNA MIMAT0000879 Dnajc2 mRNA 116456 Prediction 0.1828 Dnajc2 RAID02876677 rno-miR-153-3p miRNA MIMAT0000855 Dnajc2 mRNA 116456 Prediction 0.1828 Dnajc2 RAID02916716 rno-miR-26b-5p miRNA MIMAT0000797 Dnajc2 mRNA 116456 Prediction 0.1828 Dnajc2 RAID02966143 rno-miR-20b-5p miRNA MIMAT0003211 Dnajc2 mRNA 116456 Prediction 0.1828 Dnajc2 RAID02973868 rno-miR-181d-5p miRNA MIMAT0005299 Dnajc2 mRNA 116456 Prediction 0.1828 Dnajc2 RAID02981282 rno-miR-346 miRNA MIMAT0000596 Dnajc2 mRNA 116456 Prediction 0.1828 Dnajc2 RAID03200438 rno-miR-1-3p miRNA MIMAT0003125 Dnajc2 mRNA 116456 Prediction 0.1828 Dnajc2 RAID03510723 rno-miR-96-5p miRNA MIMAT0000818 Dnajc2 mRNA 116456 Prediction 0.1828 Dnajc2 RAID03700406 rno-miR-101b-3p miRNA MIMAT0000615 Dnajc2 mRNA 116456 Prediction 0.1828 Dnajc2 RAID03716326 rno-miR-301a-3p miRNA MIMAT0000552 Dnajc2 mRNA 116456 Prediction 0.1828 Dnajc2 RAID03871297 rno-miR-148b-3p miRNA MIMAT0000579 Dnajc2 mRNA 116456 Prediction 0.1828 Dnajc2 RAID03892650 rno-miR-144-3p miRNA MIMAT0000850 Dnajc2 mRNA 116456 Prediction 0.1828 Dnajc2 RAID03922026 rno-miR-152-3p miRNA MIMAT0000854 Dnajc2 mRNA 116456 Prediction 0.1828 Dnajc2 RAID03947511 rno-miR-26a-5p miRNA MIMAT0000796 Dnajc2 mRNA 116456 Prediction 0.1828 Dnajc2 RAID03981887 rno-miR-130b-3p miRNA MIMAT0000837 Dnajc2 mRNA 116456 Prediction 0.1828 Dnajc2 RAID04003629 rno-miR-92a-3p miRNA MIMAT0000816 Dnajc2 mRNA 116456 Prediction 0.1828 Dnajc2 RAID04061414 rno-miR-25-3p miRNA MIMAT0000795 Dnajc2 mRNA 116456 Prediction 0.1828