DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000599 rno-miR-349 117028 Bin1 ucuccaauucuGUC-GUCCCGAc |:| ||||||| ggccgcgccacCGGACAGGGCUu 2 12 332 354 [rn4:18:24872679-24872701:+] 0.6528 142 7 -18.11 -0.1199 MIMAT0000603 rno-miR-20a* 117028 Bin1 acauUCACGAGCAUUACGUCa ||||:|| ||||||| cccuAGUGUUCAAAAUGCAGc 2 18 448 468 [rn4:18:24872795-24872815:+] 0.6528 165 7 -19.26 -0.8622 MIMAT0000607 rno-miR-7a* 117028 Bin1 uaccgucuGACACUAAACAAca |||| |||||| cuucuuuuCUGUUUUUUGUUuu 3 15 84 105 [rn4:18:24872431-24872452:+] 0.6528 134 0 -8.73 -0.1580 MIMAT0004711 rno-miR-21* 117028 Bin1 cuGUC-GGGUAGCUGACGACAAc ||| || | || ||||||| ugCAGACCAACCGUGUGCUGUUu 2 21 416 438 [rn4:18:24872763-24872785:+] 0.6528 159 7 -19.66 -0.6310 MIMAT0003152 rno-miR-22* 117028 Bin1 auUUCGAACGGUG---ACUUCUUGa |: ||| | :: |||||||| gcAGCCUUCCGGUGUGUGAAGAACc 2 21 14 38 [rn4:18:24872361-24872385:+] 0.6528 147 7 -14.66 -0.6582 MIMAT0004715 rno-miR-27a* 117028 Bin1 acgaguguuCGUCGAUUCGGGa | | ||||||| gugcuguuuGAAAAUAAGCCCu 2 14 430 451 [rn4:18:24872777-24872798:+] 0.6528 141 7 -17.27 -1.1877 MIMAT0004739 rno-miR-204* 117028 Bin1 uugCAGGGAAACGGAAG-GGUCg ||:| | | |||| |||| ccaGUUCAGUGGACUUCUCCAGu 2 20 207 229 [rn4:18:24872554-24872576:+] 0.6528 123 0 -18.65 -0.5998 MIMAT0000900 rno-miR-298 117028 Bin1 cccuucuugucgggaGGAGACGg ||||||| -------cgggagagCCUCUGCa 2 9 1 16 [rn4:18:24872348-24872363:+] 0.6528 140 7 -20.89 -0.4147 MIMAT0000900 rno-miR-298 117028 Bin1 cccuucuugucGGGAGGAGACGg :|:|||||| | uucuuuguuuuUCUUCCUCUUCu 2 13 66 88 [rn4:18:24872413-24872435:+] 0.6528 120 0 -14.04 -0.1397 MIMAT0004743 rno-miR-300-5p 117028 Bin1 uguuuccuauuGGA-GAGAAGuu |:| |||||| ucuuuguuuuuCUUCCUCUUCuu 3 12 67 89 [rn4:18:24872414-24872436:+] 0.6528 122 0 -9.35 -0.1790 MIMAT0005285 rno-miR-877 117028 Bin1 ggGACGCGGUAGAGGAGAug :||: :: :|||||| cuUUGUUUUUCUUCCUCUuc 3 19 68 87 [rn4:18:24872415-24872434:+] 0.6528 126 0 -15.95 -0.3068 MIMAT0005326 rno-miR-671 117028 Bin1 ccaccucgggacucUUGGCCu |||||| aaacaaaaaugaaaAACCGGa 2 8 474 494 [rn4:18:24872821-24872841:+] 0.6528 120 6 -14.05 -0.3607 MIMAT0005333 rno-miR-742 117028 Bin1 aaAUGGGUUGU-ACCAC-CGAAAg | ||||| | ||| ||||| uuUCCCCAAAAGAUGUGUGCUUUu 2 21 39 62 [rn4:18:24872386-24872409:+] 0.6528 123 0 -16.18 -1.0120 MIMAT0012847 rno-miR-293 117028 Bin1 guUUCACAGUGUGUCAAACUca || || :::| |||||| ccAACCGU-GUGCUGUUUGAaa 3 21 422 442 [rn4:18:24872769-24872789:+] 0.6528 130 0 -9.65 -0.1209 MIMAT0012848 rno-miR-294 117028 Bin1 ucuaucccgGAGGUAAAACUc :|:::|||||| uguuuuuugUUUUGUUUUGAa 2 13 93 113 [rn4:18:24872440-24872460:+] 0.6528 132 6 -6.50 -0.2762 MIMAT0012855 rno-miR-666 117028 Bin1 ccgagagugucGGC-ACGGGCGa ||| ||||||| uaguugaguucCCGAUGCCCGCa 2 12 257 279 [rn4:18:24872604-24872626:+] 0.6528 146 7 -21.40 -0.6022 MIMAT0000566 rno-miR-329 117028 Bin1 uuuuuccaaucgacCCACACAa ||||||| cucugcagccuuccGGUGUGUg 2 9 10 31 [rn4:18:24872357-24872378:+] 0.6528 140 7 -11.49 -0.3572 MIMAT0000575 rno-miR-335 117028 Bin1 ugUAAAAAGCAAUAACGAGAACu :|||| : ||: |||||| uuGUUUUGUUUUGAAACUCUUGa 2 22 99 121 [rn4:18:24872446-24872468:+] 0.6528 129 6 -15.28 -0.1786 MIMAT0000606 rno-miR-7a 117028 Bin1 uguuguuuuagugaucAGAAGGu |||||| uucuuuucuuuguuuuUCUUCCu 2 8 61 83 [rn4:18:24872408-24872430:+] 0.6528 120 6 -8.51 -0.2670 MIMAT0000777 rno-let-7e 117028 Bin1 uuGAUAUGUUGGAGGAUGGAGu :| | :: ::|:|| |||| uuUUCUUUGUUUUUCUUCCUCu 2 21 64 85 [rn4:18:24872411-24872432:+] 0.6528 120 0 -11.65 -0.1058 MIMAT0000778 rno-let-7f 117028 Bin1 uuGAUAUGUUAGAUGAUGGAGu :| | :: |:| || |||| uuUUCUUUGUUUUUCUUCCUCu 2 21 64 85 [rn4:18:24872411-24872432:+] 0.6528 120 0 -8.26 -0.1047 MIMAT0000780 rno-miR-7b 117028 Bin1 uguuguuuuaguguucAGAAGGu |||||| uucuuuucuuuguuuuUCUUCCu 2 8 61 83 [rn4:18:24872408-24872430:+] 0.6528 120 6 -6.95 -0.2670 MIMAT0000791 rno-miR-22 117028 Bin1 ugUCAAGAAGUUGACCGUCGAa :| || || ||||||||| uuGGGUCCUCUUCUGGCAGCUg 2 21 353 374 [rn4:18:24872700-24872721:+] 0.6528 164 7 -19.89 -0.1453 MIMAT0000851 rno-miR-145 117028 Bin1 ucccuaaggacCCUUUUGACCUg | ||||| ||| caaacaaaaauGAAAAACCGGAc 2 13 473 495 [rn4:18:24872820-24872842:+] 0.6528 120 0 -10.95 -0.1086 MIMAT0000863 rno-miR-186 117028 Bin1 ucggguuuuccucuuAAGAAAc |||||| augugugcuuuucuuUUCUUUg 2 8 51 72 [rn4:18:24872398-24872419:+] 0.6528 120 6 -8.01 -0.2217 MIMAT0000863 rno-miR-186 117028 Bin1 ucggguuuuccucuuAAGAAAc |||||| uuguuuuucuuccucUUCUUUu 2 8 70 91 [rn4:18:24872417-24872438:+] 0.6528 120 6 -3.56 -0.1508 MIMAT0000887 rno-miR-217 117028 Bin1 uaGGUCAGUCAAGGACUACGUCau |:||| |||| |||||| ccCUAGU--GUUCAAAAUGCAGcg 3 23 448 469 [rn4:18:24872795-24872816:+] 0.6528 139 0 -16.98 -0.1152 MIMAT0000896 rno-miR-292-5p 117028 Bin1 guuUUCUCGGGGGUCAAACUca || |: : | |||||| accAACCGUGUGCUGUUUGAaa 3 20 421 442 [rn4:18:24872768-24872789:+] 0.6528 127 0 -8.69 -0.1221 MIMAT0003119 rno-miR-224 117028 Bin1 auuuGCCUUGGUGA--UCA-CUGAAc | || ||| | ||| ||||| ccguCCGACCCAGUUCAGUGGACUUc 2 20 198 223 [rn4:18:24872545-24872570:+] 0.6528 122 0 -10.98 -0.4066 MIMAT0003123 rno-miR-377 117028 Bin1 gguuuucaACGGAAACACACUa | || ||||||| cugcagccUUCCGGUGUGUGAa 2 15 12 33 [rn4:18:24872359-24872380:+] 0.6528 146 7 -15.38 -0.6172 MIMAT0003123 rno-miR-377 117028 Bin1 gguuuucaacggaaACACACua |||||| cuuuccccaaaagaUGUGUGcu 3 9 38 59 [rn4:18:24872385-24872406:+] 0.6528 120 0 -13.86 -0.1429 MIMAT0005320 rno-miR-495 117028 Bin1 uucuucacgugguacAAACAAa |||||| ugugcuuuucuuuucUUUGUUu 2 8 54 75 [rn4:18:24872401-24872422:+] 0.6528 120 6 -9.07 -0.2107 MIMAT0005320 rno-miR-495 117028 Bin1 uucuucacgugguacAAACAAa |||||| ucuucuuuucuguuuUUUGUUu 2 8 83 104 [rn4:18:24872430-24872451:+] 0.6528 120 6 -4.03 -0.1700

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G013837 Bin1 Rattus norvegicus 117028

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Bin1 rno-miR-106b 387 408 UAGACGUGACA----GUCGUGAAAU ||||||||| |||| || -CCUGCACUGUGGCCCAGC-CUG-- Bin1 rno-miR-128a 378 400 UUUUCUCUGGCCAA---GUGACACU- :|:| || |||||||: ----UGGGCAGGGCCUGCACUGUGGC Bin1 rno-miR-128b 378 400 CUUUCUCUGGCCAA---GUGACACU- :|:| || |||||||: ----UGGGCAGGGCCUGCACUGUGGC Bin1 rno-miR-130a 372 397 UACGGGAAAAUUGUA----ACGUGAC- |||||| ::|| ||||||| CUGCCCUG--GGCAGGGCCUGCACUGU Bin1 rno-miR-130b 372 397 UACGGGAAA-GUAGUA-ACGUGAC- |||||| || ||||||| CUGCCCUGGGCAGGGCCUGCACUGU Bin1 rno-miR-135a 275 311 AGUGUA--------------UCCUUAUUUUUCGGUAU |:||| :|| |: |:||||| CCGCAUGUUCAGGGCGGGCCGGGGGUGCAGAGCCAC- Bin1 rno-miR-135b 275 311 -GUGUA--------------UCCUUACUUUUCGGUAU |:||| :|| || |:||||| CCGCAUGUUCAGGGCGGGCCGGGGGUGCAGAGCCAC- Bin1 rno-miR-139 378 400 -UCUGUGC---ACGUGACAUCU :|:|| | ||||||||:| UGGGCAGGGCCUGCACUGUGGC Bin1 rno-miR-140 291 312 GAUGGUAUCCCAU--UUUGGUGA :||: :||||: :|:|||| -GGCCG-GGGGUGCAGAGCCACC Bin1 rno-miR-140* 356 383 ACAGGC----ACCAA-GAUGGGACACCAU |||| ||| ||:||||| || GGUCCUCUUCUGGCAGCUGCCCUG-GGC- Bin1 rno-miR-141 197 219 -GGUAGAAAUGGUCU-GUCACAAU ||:|| |||| ||||| GCCGUCCGACCCAGUUCAGUGG-- Bin1 rno-miR-148b 380 410 -UGUUUCAA----GACACUA---CGUGACU- :||::| |||||: || |||: GGCAGGGCCUGCACUGUGGCCCAGC-CUGGU Bin1 rno-miR-150 339 359 -GUGACCAUGUUCCCAACCCUCU ||| || |||:|| ||||| CCACCGG-ACAGGGCUUGGGU-- Bin1 rno-miR-151 375 411 -GGA---GUUCC----------UCGGAGUCAGAUCA- ||| ||:|| :||| ||| ||:|| CCCUGGGCAGGGCCUGCACUGUGGCC-CAGCCUGGUC Bin1 rno-miR-151* 238 273 AUGAUCUGACA---------------CUCGAGGAGCU- :|| :|||| |||:||| ||| AGCU--GCUGUGUCCCCCUCCUAGUUGAGUUCC-CGAU Bin1 rno-miR-15b 415 439 -ACAUUUGGUAC-UACACGACGAU || |:|||| :|||||||:| CUGCAGACCAACCGUGUGCUGUUU Bin1 rno-miR-16 224 247 GCGGUUAUAAAUGCA-CGACGAU- |||:|||| || ||||||: -UCCAGUAUUCCCGAAGCUGCUGU Bin1 rno-miR-17 385 408 UGAUGGACGUGACAU----UCGUGAAAC :||||||||||: ||| || --GGCCUGCACUGUGGCCCAGC-CUG-- Bin1 rno-miR-187 331 353 GCCGACGUUGUGUUCUGUGCU- ||| ||: ||| :|||| |: UGGCCGCGCCACCGGACAGGGC Bin1 rno-miR-193 383 405 GACCCUGAA---ACAUCCGGUCAA ||| || |||:| |||| -AGGGCCUGCACUGUGGCCCAGC- Bin1 rno-miR-195 224 247 CGGUUAUAAA-GACACGACGAU- |||:|||| | ||||||: UCCAGUAUUCCCGAAGCUGCUGU Bin1 rno-miR-199a 343 383 -CUUGUCCA----UCAG------ACU-----UGUGACCC- |:||||| :||| ||: :| ||||| CGGACAGGGCUUGGGUCCUCUUCUGGCAGCUGCCCUGGGC Bin1 rno-miR-205 14 36 -GUCUG-AGGCCACCUUACUUCCU ||| | ||||||| :||||| GCAGCCUUCCGGUGU-GUGAAGA- Bin1 rno-miR-20a* 451 469 ACAUUCACGAGCAUUACGUCA ||||:|| ||||||| ---UAGUGUUCAAAAUGCAGC Bin1 rno-miR-20b 385 408 -UGGACGUGAUAC----UCGUGAAAC :||||||||:|| ||| || GGCCUGCACUGUGGCCCAGC-CUG-- Bin1 rno-miR-20b* 445 469 GUCU---UCACGAGUGUGACGUCA || ||||:||| ||||| AAGCCCUAGUGUUCAAAAUGCAGC Bin1 rno-miR-214 371 398 -GAC-GGACAGACA-CGGACG--ACA- ||| |||| |||||| ||| GCUGCCCUGGGCAGGGCCUGCACUGUG Bin1 rno-miR-22 345 375 -UGUCAAGA-------AGUUGACCGUCGAA |||| || || ||||||||| GACAGGGCUUGGGUCCUCUUCUGGCAGCUG Bin1 rno-miR-24 279 311 GACAAGGA-CGA------CUUGA--CUCGGU- ||||| || | : |||||| AUGUUCAGGGCGGGCCGGGGGUGCAGAGCCAC Bin1 rno-miR-25 288 306 AGUCUGGCUCUGUUCACGUUAC |:|:|||:| :|||||: GCGGGCCGGG---GGUGCAGA- Bin1 rno-miR-27b 380 400 -CGUCUUGAAUCGGUGACACUU ||||::| || ||||||: GGCAGGGCCU-GC-ACUGUGGC Bin1 rno-miR-291-3p 286 322 -CCGUGUG--UUUCAC--CUU--------CGUGAAA |||: :| :::||| ||: |||||| GGGCGGGCCGGGGGUGCAGAGCCACCGCCGCACUUG Bin1 rno-miR-292-3p 314 341 -UGUGAG----UUUUGGACCGCCGUGAA :||||: :| :|:|||| ||:| CGCACUUGCCUGACGCUUGGCCGCGCC- Bin1 rno-miR-296 283 304 UGUCCUAACUCCCCCCCGGGA ||||: |: |||||: | UCAGGGCGGGCCGGGGGUGCA Bin1 rno-miR-298 1 30 -CCUUCU------UGUCGGGAGGAGACGG ||:||| :|||||:||| ||: CGGGAGAGCCUCUGCAGCCUUCCGGUGUG Bin1 rno-miR-299 124 160 -UACAUACA------CCCU-GCC-----AUUUGGU- :||| | |||| ||| |||:||| AGUGUCGGGAAAUUGGGGAGCGGAAACCUAAGCCAA Bin1 rno-miR-301 370 397 UACGAAA----CUGUUAUGAUAACGUGAC- ||| |:|| :| ||||||| -AGCUGCCCUGGGCAGGGCC--UGCACUGU Bin1 rno-miR-31 304 326 GUCGAUA-CGGUCGUAGAACGGA- ||| ||| ||| ||||||| GAGCCACCGCC-GCA-CUUGCCUG Bin1 rno-miR-324-3p 364 388 -GGUCGUCGU--GGACCCCGUCACC- |::||||| ||| |||||| || UCUGGCAGCUGCCCU-GGGCAG-GGC Bin1 rno-miR-324-5p 267 304 UGUGGUUACGGGA--------------U--CCCCUACGC ||:|||||| : ||||:||| --CCCGAUGCCCGCAUGUUCAGGGCGGGCCGGGGGUGCA Bin1 rno-miR-328 287 317 -UGCCU--UCCCGUC-UCUCC----CGGUC :|||: :||| | |||| |||: GGCGGGCCGGGGGUGCAGAGCCACCGCCGC Bin1 rno-miR-329 284 303 UUUUUCCAAUCGACCCACACAA |:|| :|| ||| ||| --CAGGGCGGGCCGGGGGUGC- Bin1 rno-miR-330 412 441 AGAGACGUCC----GGGACACGA--AACG |||||||| || |||||| ||| GCUCUGCAGACCAACCGUGUGCUGUUUGA Bin1 rno-miR-331 281 304 -AAGAUCCUAUCCGGGUCCC-CG- ||| |||: :|||| :||| || GUUC-AGGGCGGGCCGGGGGUGCA Bin1 rno-miR-335 93 123 UGUAAAAAGCAAU----AAC---GAGAACU- :|||||:||| ||| ||||||| -UGUUUUUUGUUUUGUUUUGAAACUCUUGAA Bin1 rno-miR-337 120 150 -UUUCCGUAGUAUA-----UCCUCGACUU- ||| |::||: :||||| ||| GAAAAGUGUCGGGAAAUUGGGGAGCGGAAA Bin1 rno-miR-339 348 388 ACUCGA----------GGACCU---------CCUGUCCCU |:||| :|||| ||:||||| AGGGCUUGGGUCCUCUUCUGGCAGCUGCCCUGGGCAGGGC Bin1 rno-miR-342 22 59 CUGCC-CACGCU------AAAG---------ACACACUCU ||| |||:|| |||| |||||| -CCGGUGUGUGAAGAACCUUUCCCCAAAAGAUGUGUGC-- Bin1 rno-miR-343 282 307 -AGACCCGUGU-GCCUCC-C-UCU- || ||||: : |||:|| | ||| UUCAGGGCGGGCCGGGGGUGCAGAG Bin1 rno-miR-345 276 306 -CGUGA----CCUGA----UCCCCA-GUCGU |||: ||:| :||||| ||| CGCAUGUUCAGGGCGGGCCGGGGGUGCAGA- Bin1 rno-miR-346 285 307 UCUCCGUCCGUGAG-UC-CGUCUGU :|||:||| | :| ||||| -AGGGCGGGC-CGGGGGUGCAGAG- Bin1 rno-miR-347 285 305 ACCCGCUGGGUCUCCCUGU- |||||: ||:|:|| :|| AGGGCGGGCCGGGGGUGCAG Bin1 rno-miR-349 354 384 UCUCCAAUU-----CUGUCGU-----CCCGAC :||| |:|||| |||| -UGGGUCCUCUUCUGGCAGCUGCCCUGGGCA- Bin1 rno-miR-34a 366 393 -UUGUUGG------UCGAUUCUGUGACGGU ::||:|: :|| |:|:| |||| UGGCAGCUGCCCUGGGC-AGGGC-CUGCA- Bin1 rno-miR-34c 300 326 -CGUUAGUCGAU--UGAUGUGA-CGGA- |||: ||| :| :|||| |||| UGCAG--AGCCACCGCCGCACUUGCCUG Bin1 rno-miR-351 348 370 GUCCGAGUUUCCCG--AGGAGUCCCU :||||: |||: ||:|| || AGGGCUU---GGGUCCUCUUCUGGC- Bin1 rno-miR-363-5p 388 409 UUUAACGUAGCACUAGGU-GGGC- |||| :|||: ||| ||:| ---CUGCACUGUGGCCCAGCCUGG Bin1 rno-miR-370 290 336 -UUGGUCCAA-------GGUGG-GGUCGU----------- CCG ::||:|| ||||| || ||| ||| GGGCCGGGGGUGCAGAGCCACCGCC-GCACUUGCCUGACGCUUGGCC Bin1 rno-miR-377 3 34 GGUUUUCAA------CGGAA----ACACACUA :|:|| ||||| ||||||| -GGAGAGCCUCUGCAGCCUUCCGGUGUGUGAA Bin1 rno-miR-378 345 373 UGUGUCCUGGACCUCAGU------CC-UC- |||||:|:||| ||| || || -GACAGGGCUUGG-GUCCUCUUCUGGCAGC Bin1 rno-miR-412 286 306 UGCCGAUCACCUGG--UCCACUUCA ||| ||:|| :|||| || -GGGC----GGGCCGGGGGUGCAGA Bin1 rno-miR-422b 196 218 -CGGAAGACUGAGGUUCAGGUCA- ||| || ||| ||| ||:|||| AGCCGUCCGAC-CCA-GUUCAGUG Bin1 rno-miR-424 223 247 -AGGUUUU--GUACUUAACGACGAC- ||||: | ||| ||||||| CUCCAGUAUUCCCGAA--GCUGCUGU Bin1 rno-miR-431 372 401 -ACGUA--CUG--CCGGACGUU---CUGU ||| |:| |||||||| |:| CUGCCCUGGGCAGGGCCUGCACUGUGGCC Bin1 rno-miR-483 283 308 UGUUCUGCCC--UCCCCUC--CUCACU ||:|:|||| :|||| ||| UCAGGGCGGGCCGGGGGUGCAGAGC-- Bin1 rno-miR-497 415 439 -AUGUUUGGUGU-CACACGACGAC |:||:|||| ||||||||:| CUGCAGACCAACCGUGUGCUGUUU Bin1 rno-miR-503 225 247 -GUCAUGACAAGGG---CGACGAU- |||||: |||| ||||||: CCAGUAU---UCCCGAAGCUGCUGU Bin1 rno-miR-7 173 194 UUGUUUUAG-UGAUCAGAAGGU- ||:|| : |:||:||||| --AAAGAUGAGGUGGUUUUCCAA Bin1 rno-miR-92 288 306 -GUCCGGCCCUGUUCACGUUAU |:||||||| :|||||: GCGGGCCGGG---GGUGCAGA- Bin1 rno-miR-106b 370 397 UAGACGUGA-CAGU------CGUGAAAu | |||| || | || ||||| | AGCTGCCCTGGGCAGGGCCTGCACTGTg Bin1 rno-miR-128a 380 398 uuuUCUCUGGCCAAGUGACACu || |:|| | ||||||| ggcAG-GGCCTG--CACTGTGg Bin1 rno-miR-128b 380 398 CUUUCUCUGGCCAAGUGACACu |: || |:|| | ||||||| GGCAG-GGCCTG--CACTGTGg Bin1 rno-miR-135a 289 311 aguguauCCUUAUUUUUCGGUau ||::|: |:||||| cgggccgGGGGTGCAGAGCCAcc Bin1 rno-miR-135b 290 311 guguauCCUUACUUUUCGGUau ||::|| |:||||| gggccgGGGGTGCAGAGCCAcc Bin1 rno-miR-139 379 399 uCUGU---GCACGUGACAUCu |:|| | ||||||||:| gGGCAGGGCCTGCACTGTGGc Bin1 rno-miR-140 290 311 gauGGUAUCC-CAUUUUGGUGa ||: :|| | |:|:|||| gggCCGGGGGTGCAGAGCCACc Bin1 rno-miR-140* 373 400 ACAGG---C-ACCAAGAUGGGACACCau || || | || ||:| |||||| TGCCCTGGGCAGGGCCTGCACTGTGGcc Bin1 rno-miR-141 198 220 GGUAGAAAUGGUC-UGUCACaau ||:|| |||| ||||| CCGTCCGACCCAGTTCAGTGgac Bin1 rno-miR-148b 374 396 uguuucaaGACAC-UACGUGACu | | | ||||||| gccctgggCAGGGCCTGCACTGt Bin1 rno-miR-150 340 360 GUGACCAUGUUCCCAACCCucu ||| || |||:|| ||||| CACCGG-ACAGGGCTTGGGtcc Bin1 rno-miR-151 387 409 GGA-GUUCCUCGGAGUCAGAUCA ||| || | | | ||| ||:|| CCTGCACTGTGGCCCAGCCTGGT Bin1 rno-miR-151* 233 260 auGAUCUGAC-ACUC-----GAGGAGCu | | :||| || | ||||| | ccCGAAGCTGCTGTGTCCCCCTCCTAGt Bin1 rno-miR-152 375 396 GGGUUCAAGACAGUACGUGACu ||| :| | | ||||||| CCCTGGGCAGGGCCTGCACTGt Bin1 rno-miR-15b 416 438 ACAUUUGG-UACUACACGACGAu || |:||| | :|||||||:| TGCAGACCAACCGTGTGCTGTTt Bin1 rno-miR-16 223 245 GCGGUUAUAAAUGC-ACGACGAu | |||:|||| || |||||| CTCCAGTATTCCCGAAGCTGCTg Bin1 rno-miR-17 371 397 uGAU-GGA--CGUGACAUUCGUGAAAC ||: ||| ||| | ||||| || gCTGCCCTGGGCAGGGCCTGCACTGTG Bin1 rno-miR-193 382 405 GACCCUGA---AACAUCCGGUCaa | ||| || |||:| |||| CAGGGCCTGCACTGTGGCCCAGcc Bin1 rno-miR-199a 379 397 CUUGUCCAUCAGACUUGUGACcc |::|||| | || :||||| GGGCAGG--GCCT--GCACTGtg Bin1 rno-miR-205 15 36 GUCUG-AGGCCACCUUACUUCcu ||| | |||||| | :||||| CAGCCTTCCGGT-GTGTGAAGaa Bin1 rno-miR-20a* 448 468 acauUCACGAGCAUUACGUCa ||||:|| ||||||| ccctAGTGTTCAAAATGCAGc Bin1 rno-miR-20b 375 397 uGGACGUGAUAC--UCGUGAAAC |||| :| : | ||||| || cCCTGGGCAGGGCCTGCACTGTG Bin1 rno-miR-20b* 448 468 gucuUCACGAGUGUGACGUCa ||||:||| | ||||| ccctAGTGTTCAAAATGCAGc Bin1 rno-miR-214 372 396 GAC-GGA-CAGACACGGAC--GACA ||| ||| | | | ||||| |||| CTGCCCTGGGCAGGGCCTGCACTGT Bin1 rno-miR-217 253 278 uAGG-UCAG-UCAAGGACUACGucau ||| |||: |||||| ||||| cTCCTAGTTGAGTTCCCGATGCccgc Bin1 rno-miR-22 353 374 uguCAAGAAGUUGACCGUCGAa | || || ||||||||| ttgGGTCCTCTTCTGGCAGCTg Bin1 rno-miR-24 288 309 gacaaGGACGACUUGACUCGGU || | | :| |||||| gcgggCCGGGGGTGCAGAGCCA Bin1 rno-miR-25 283 306 AGUCUGGCUCUG--UUCACGUuac ||||: ||:| | ::||||| TCAGGGCGGGCCGGGGGTGCAgag Bin1 rno-miR-27b 381 399 CGUCUUGAAUCGGUGACACuu ||||::| | | ||||||| GCAGGGCCT-G-CACTGTGgc Bin1 rno-miR-291-3p 296 321 CCGUGUGUUUC---ACCUUCGUGAAa || :::||:|| | |||||| GGGGTGCAGAGCCACCGCCGCACTTg Bin1 rno-miR-292-3p 297 320 ugugaGUUUUGG-ACCGCCGUGAA ||:|:|| || |||||| gggtgCAGAGCCACCGCCGCACTT Bin1 rno-miR-296 277 296 uGUCCUAACUCCCCCCCGGga || | || |||| ||||| gCATG-TTCAGGGCGGGCCgg Bin1 rno-miR-298 2 16 CCUUCUUGUCGGGAGGAGACGg ||:|| || ||||||| GGGAG---AG----CCTCTGCa Bin1 rno-miR-299 131 152 uacaUACACCCUGCCAUUUGGu || |||| | ||||| ggaaATTGGGGAGCGGAAACCt Bin1 rno-miR-301 372 395 uAC-GAAACUGUUAUGAUAACGUGAC || | | |:||: :| ||||||| cTGCCCTGGGCAGGGCC--TGCACTG Bin1 rno-miR-324-3p 365 387 GGUCGUCG-UGGACCCCGUCACc |::||||| :|| |||||| | CTGGCAGCTGCCCTGGGCAGGGc Bin1 rno-miR-324-5p 280 303 ugugGUUACG---GGAUCCCCUACGc ||: || || ||||:||| tgttCAGGGCGGGCC--GGGGGTGCa Bin1 rno-miR-328 275 296 uGCCUUCCCGUCUCUCCCGGUC || | | |||:| |||||:| cCGCATGTTCAGGGCGGGCCGG Bin1 rno-miR-329 282 303 uuuUUCCAAUCGACCCACACaa |:|| :|| ||| ||| ttcAGGGCGGGCCGGGGGTGca Bin1 rno-miR-331 282 300 AAGAUCCUAUCCGGGUCCCCg ||| |||: :|| ||:|||| TTC-AGGGCGGG-CCGGGGGt Bin1 rno-miR-335 92 121 uguAAAAAGC--AAUAA-----CGAGAACU |||||:| ||:|| ||||||| ctgTTTTTTGTTTTGTTTTGAAACTCTTGA Bin1 rno-miR-337 121 148 UUUCCGUAG---UAUA--UCCUCGACUU ||| |::|| | || :||||| ||| AAAAGTGTCGGGAAATTGGGGAGCGGAA Bin1 rno-miR-339 324 352 ACU-CGA---GGACC--U--CCUGUCCCu ||| ||| || | | |||||||| TGACGCTTGGCCGCGCCACCGGACAGGGc Bin1 rno-miR-339 368 387 acUCGA--GGACCUCCUGUCCCu |||| ||| ||:||||| gcAGCTGCCCT---GGGCAGGGc Bin1 rno-miR-342 1 34 cuGCCC--------ACG-CUAAAG---ACACACUcu |||| ||| | ||| ||||||| --CGGGAGAGCCTCTGCAGCCTTCCGGTGTGTGAag Bin1 rno-miR-343 283 302 AGACCCGUGUGCCUCCCUCu || ||||: :| |:||| | TCAGGGCGGGCCGGGGGTGc Bin1 rno-miR-345 286 306 CGUGACCUGAUCCCCA-GUCgu | :| ||:| :||||| ||| GGGC-GGGCCGGGGGTGCAGag Bin1 rno-miR-346 269 294 uCUCCGUCCGU--GAGU-CCGUCUGu || || ||| :||| |||:|:| cGATGCCCGCATGTTCAGGGCGGGCc Bin1 rno-miR-349 332 354 ucuccaauucuGUC-GUCCCGAc |:| ||||||| ggccgcgccacCGGACAGGGCTt Bin1 rno-miR-349 368 389 ucuccaauucuguCGUCCCGac ||||||| gcagctgccctggGCAGGGCct Bin1 rno-miR-34a 354 377 uuguuGGUCGAUUCUGU-GACGGu || :| |:|| ||||| tgggtCCTCTTCTGGCAGCTGCCc Bin1 rno-miR-34c 301 324 CGUUAGUCGAU--UGAUGUG-ACGGA |||: ||| | :| :||| ||||| GCAG--AGCCACCGCCGCACTTGCCT Bin1 rno-miR-351 365 387 GUCCGAGUUUCCCGAGGA---GUCCCu | ||| |: || ||| ||||| CTGGC---AGCTGC-CCTGGGCAGGGc Bin1 rno-miR-363-5p 395 416 uuuaacGUAGCACUAGGUGGGc || | ||:|||:|:| gtggccCAGCCTGGTCCGCTCt Bin1 rno-miR-370 327 351 uuGGUCCAAGGUGG-GGUC-GUCCg |: || |:|| ||:| |||| cgCTTGGCCGCGCCACCGGACAGGg Bin1 rno-miR-377 8 33 gguuuucaaCGGAA----ACACACUa ||||| ||||||| gcctctgcaGCCTTCCGGTGTGTGAa Bin1 rno-miR-378 366 387 uguGUC--CUGGACCUCAGUCCuc ||| | |||| | |||| tggCAGCTGCCCTG--GGCAGGgc Bin1 rno-miR-412 285 305 UGCCGAUCACCUGG--UCCACUUCa | ||| ||:|| :|||| || AGGGC----GGGCCGGGGGTGCAGa Bin1 rno-miR-422b 197 216 CGGAAGACUGAGGUUCAGGUCA ||| || ||| || |||:|||| GCCGTCCGAC-CC-AGTTCAGT Bin1 rno-miR-424 224 245 AGGUUUU--GUACUUAACGACGAC ||||: | | ||| ||||||| TCCAGTATTCCCGAA--GCTGCTG Bin1 rno-miR-431 367 388 aCGUACUGCCGGA--CGUUCUGu ||| | :| ||| |||:|:| gGCA-GCTGCCCTGGGCAGGGCc Bin1 rno-miR-497 416 438 AUGUUUGG-UGUCACACGACGAc |:||:||| || ||||||||:| TGCAGACCAACCGTGTGCTGTTt Bin1 rno-miR-503 226 245 GUCAUGACAAGG---GCGACGAu ||||| |||| |||||| CAGTA---TTCCCGAAGCTGCTg Bin1 rno-miR-542-5p 24 48 gCACUGUACUACU-----AGGGGCUc ||| ::||| || ||||| | gGTG-TGTGAAGAACCTTTCCCCAAa Bin1 rno-miR-7 170 192 uuGUUU-UAGU-GAUCAGAAGGU |||| || | |:||:||||| ccCAAAGATGAGGTGGTTTTCCA Bin1 rno-miR-92 284 306 GUCCGGCCCUG--UUCACGUuau |||| |||| | ::||||| CAGGGCGGGCCGGGGGTGCAgag Bin1 rno-miR-128a 391 398 UUUUC-----------------------UCUGGCCAAGUGACACU :|:|| |||||||: GGUCCUCUUCUGGCAGCUGCCCUGGGCAGGGCCUG--CACUGUGGC Bin1 rno-miR-128b 391 398 -----------------------CUUUCUCUGGCCAAGUGACACU |:: :|:|| |||||||: GGUCCUCUUCUGGCAGCUGCCCUGGGCAGGGCCUG--CACUGUGGC Bin1 rno-miR-148b 389 396 --------------UGUUU-CAAGACA----CU--ACGUGACU :||: | ||| |: ||||||| UGGGUCCUCUUCUGGCAGCUGCCCUGGGCAGGGCCUGCACUGU Bin1 rno-miR-152 389 396 ----------------------GGGUUCAAGACAGUACGUGACU || :| | | ||||||| UGGGUCCUCUUCUGGCAGCUGCCCUGGGCAGGG-CCUGCACUGU Bin1 rno-miR-20a* 461 468 ACAU----------------------UCACGAGCAUUACGUCA ||||:|| ||||||| CCGUGUGCUGUUUGAAAAUAAGCCCUAGUGUUCAAAAUGCAGC Bin1 rno-miR-22 367 374 --------------UGUCAAGAAGUU-------GACCGUCGAA |||| ||| :: ||||||||| GGCCGCGCCACCGGACAGGGCUUGGGUCCUCUUCUGGCAGCUG Bin1 rno-miR-339 345 352 --------------ACUCGAGGACCU---------CCUGUCCCU ||| | |:||| |||||||| CCGCCGCACUUGCCUGA-CGCUUGGCCGCGCCACCGGACAGGGC Bin1 rno-miR-349 347 354 UCUCCAAUUCU--------------------GUC-GUCCCGAC |:| ||||||| GCCGCACUUGCCUGACGCUUGGCCGCGCCACCGGACAGGGCUU

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Bin1 RAID00424222 rno-miR-22-3p miRNA MIMAT0000791 Bin1 mRNA 117028 Prediction 0.2202 Bin1 RAID00595485 rno-miR-186-5p miRNA MIMAT0000863 Bin1 mRNA 117028 Prediction 0.1828 Bin1 RAID00624646 rno-miR-425-3p miRNA MIMAT0017306 Bin1 mRNA 117028 Prediction 0.1828 Bin1 RAID00738470 rno-let-7e-5p miRNA MIMAT0000777 Bin1 mRNA 117028 Prediction 0.1828 Bin1 RAID00950622 rno-miR-153-5p miRNA MIMAT0017135 Bin1 mRNA 117028 Prediction 0.1828 Bin1 RAID01092179 rno-let-7f-5p miRNA MIMAT0000778 Bin1 mRNA 117028 Prediction 0.1828 Bin1 RAID01145520 rno-miR-495 miRNA MIMAT0005320 Bin1 mRNA 117028 Prediction 0.1828 Bin1 RAID02526082 rno-miR-335 miRNA MIMAT0000575 Bin1 mRNA 117028 Prediction 0.1828 Bin1 RAID02654649 rno-miR-3568 miRNA MIMAT0017848 Bin1 mRNA 117028 Prediction 0.1828 Bin1 RAID02834325 rno-miR-329-3p miRNA MIMAT0000566 Bin1 mRNA 117028 Prediction 0.1828 Bin1 RAID02881069 rno-miR-22-5p miRNA MIMAT0003152 Bin1 mRNA 117028 Prediction 0.1828 Bin1 RAID03124366 rno-miR-7a-5p miRNA MIMAT0000606 Bin1 mRNA 117028 Prediction 0.1828 Bin1 RAID03183717 rno-miR-7b miRNA MIMAT0000780 Bin1 mRNA 117028 Prediction 0.1828 Bin1 RAID03299113 rno-miR-224-5p miRNA MIMAT0003119 Bin1 mRNA 117028 Prediction 0.1828 Bin1 RAID03363668 rno-miR-217-5p miRNA MIMAT0000887 Bin1 mRNA 117028 Prediction 0.1828 Bin1 RAID03462860 rno-miR-21-3p miRNA MIMAT0004711 Bin1 mRNA 117028 Prediction 0.1828 Bin1 RAID03473011 rno-miR-3586-5p miRNA MIMAT0017880 Bin1 mRNA 117028 Prediction 0.1828 Bin1 RAID03597601 rno-miR-292-5p miRNA MIMAT0000896 Bin1 mRNA 117028 Prediction 0.1828 Bin1 RAID03600361 rno-miR-377-3p miRNA MIMAT0003123 Bin1 mRNA 117028 Prediction 0.1828 Bin1 RAID03800673 rno-miR-145-5p miRNA MIMAT0000851 Bin1 mRNA 117028 Prediction 0.1828