DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004637 rno-miR-323* 362301 Tmub1 cgCUUG-CGCGGUGCCUGGUGGa | || | |||| ||||||| ugGCACAGAGCCA--GACCACCc 2 21 277 297 [rn4:4:6096231-6096251:+] 0.6525 152 7 -20.99 -0.2682 MIMAT0000554 rno-miR-324-3p 362301 Tmub1 ggucGU-CGUGGACCCCGUCACc || | :|:| ||||||| ccucCACGGGCUUUUGGCAGUGu 2 19 3 25 [rn4:4:6095957-6095979:+] 0.7094 149 7 -23.57 -0.5078 MIMAT0004707 rno-let-7i* 362301 Tmub1 ucguuccgucaUC-GAACGCGUc || |||||||| cccuggagcccAGCCUUGCGCAa 2 12 117 139 [rn4:4:6096071-6096093:+] 0.6769 146 7 -16.63 -0.4761 MIMAT0004716 rno-miR-28* 362301 Tmub1 agGUCCUCGAG---UGU-UAGAUCAc ||| :| || |:| ||||||| gaCAGAGGAUCAAGAUACAUCUAGUu 2 21 321 346 [rn4:4:6096275-6096300:+] 0.5937 150 7 -14.53 -0.8163 MIMAT0004719 rno-miR-30c-1* 362301 Tmub1 ccUCAUUUGUUGGGAGA-GGGUc || :|:| :|: ||| |||| aaAGGGAGCUGCUGUCUGCCCAg 2 21 60 82 [rn4:4:6096014-6096036:+] 0.6769 124 0 -21.02 -0.1115 MIMAT0005442 rno-miR-30c-2* 362301 Tmub1 ucUCAUUUGUCGGAAGA-GGGUc || :|:| ||: ||| |||| aaAGGGAGCUGCUGUCUGCCCAg 2 21 60 82 [rn4:4:6096014-6096036:+] 0.6769 128 0 -21.74 -0.1104 MIMAT0003116 rno-miR-501 362301 Tmub1 aaaGUGGGUCCCUGUUUC-CUAa ||:|:|| ||||| ||| auaCAUCUAGUUUCAAAGAGAUg 2 20 335 357 [rn4:4:6096289-6096311:+] 0.5937 127 0 -17.62 -0.4054 MIMAT0003124 rno-miR-412 362301 Tmub1 ugCCGA--UCACC-UGGUCCACUUCa |||| | ||| | | ||||||| uaGGCUGAAUUGGAAACUGGUGAAGa 2 22 360 385 [rn4:4:6096314-6096339:+] 0.5937 159 7 -24.27 -0.7788 MIMAT0005280 rno-miR-743b 362301 Tmub1 agauaagucauaccACAGAAAg ||||||| ccucacccgcugccUGUCUUUu 2 9 88 109 [rn4:4:6096042-6096063:+] 0.6769 140 7 -7.40 -0.1344 MIMAT0005281 rno-miR-871 362301 Tmub1 acACUGGC-CGUGGUUAGACUUAu |||| | | :|: ||||||| ucUGACAGUGGGCUCUUCUGAAUc 2 22 227 250 [rn4:4:6096181-6096204:+] 0.6525 156 7 -16.28 -0.3051 MIMAT0005328 rno-miR-673 362301 Tmub1 gagguuccuggccucGACACUc |||||| uggagauuaaagaaaCUGUGAu 2 8 434 455 [rn4:4:6096388-6096409:+] 0.5857 120 6 -14.01 -0.1613 MIMAT0005332 rno-miR-708* 362301 Tmub1 gaucUUCGAGUGUCAGAUCAAc ||| | ||| ||||||| gaucAAGAU-ACA-UCUAGUUu 2 19 328 347 [rn4:4:6096282-6096301:+] 0.5937 154 7 -12.34 -0.8658 MIMAT0005337 rno-miR-760-3p 362301 Tmub1 agggguGUCUGGGUCUCGGc | |:| ||||||| cuuggcCUGGCACAGAGCCa 2 15 270 289 [rn4:4:6096224-6096243:+] 0.6525 150 7 -18.89 -0.3117 MIMAT0012833 rno-miR-582 362301 Tmub1 ucauugaccaacuugUUGACAu |||||| uguggagauuaaagaAACUGUg 2 8 432 453 [rn4:4:6096386-6096407:+] 0.5857 120 6 -10.20 -0.1474 MIMAT0012844 rno-miR-665 362301 Tmub1 ucCCUGGAGUCGGAGGACCa ||:| || :||||||| cuGGGC--CA-UCUCCUGGg 2 19 190 206 [rn4:4:6096144-6096160:+] 0.6769 145 7 -22.77 -0.1342 MIMAT0012853 rno-miR-761 362301 Tmub1 acacAGUCAAAGUGGGACGACg |||| || ||||||| ugaaUCAG--GCA-CCUGCUGc 2 19 245 263 [rn4:4:6096199-6096217:+] 0.6525 145 7 -23.24 -0.1403 MIMAT0000798 rno-miR-27b 362301 Tmub1 cgUCUUGAAUCGGUGACACUu ||| : || ||||||| ggAGAUUAAAGAAACUGUGAu 2 20 435 455 [rn4:4:6096389-6096409:+] 0.5857 151 7 -15.06 -1.2042 MIMAT0000798 rno-miR-27b 362301 Tmub1 cguCUUGAAUCGGUGA-CACUu ||| ||:| ||| |||| gcuGAA-UUGGAAACUGGUGAa 2 19 363 383 [rn4:4:6096317-6096337:+] 0.5937 120 0 -15.99 -0.7347 MIMAT0000799 rno-miR-27a 362301 Tmub1 cgCCUUGAA--UCGGUGACACUu |||: || || ||||||| guGGAGAUUAAAGAAACUGUGAu 2 20 433 455 [rn4:4:6096387-6096409:+] 0.5857 154 7 -20.29 -1.2042 MIMAT0000799 rno-miR-27a 362301 Tmub1 cgcCUUGAAUCGGUGA-CACUu ||| ||:| ||| |||| gcuGAA-UUGGAAACUGGUGAa 2 19 363 383 [rn4:4:6096317-6096337:+] 0.5937 120 0 -14.92 -0.7347 MIMAT0000834 rno-miR-128 362301 Tmub1 uuucucuggccaagUGACACu |||||| uggagauuaaagaaACUGUGa 2 8 434 454 [rn4:4:6096388-6096408:+] 0.5857 120 6 -17.31 -0.2776 MIMAT0000885 rno-miR-214 362301 Tmub1 gacggacagacacGGACGACa ||||||| ucugaaucaggcaCCUGCUGc 2 9 243 263 [rn4:4:6096197-6096217:+] 0.6525 140 7 -16.54 -0.1512 MIMAT0000886 rno-miR-216a 362301 Tmub1 agugucaacggucgaCUCUAAu |||||| uuucuggaauuugugGAGAUUa 2 8 421 442 [rn4:4:6096375-6096396:+] 0.5857 120 6 -9.55 -0.2406 MIMAT0003114 rno-miR-383 362301 Tmub1 ucggUGUCAGU--GGAAGAC-UAGa ||||| : :|||||| ||| ucugACAGUGGGCUCUUCUGAAUCa 2 19 227 251 [rn4:4:6096181-6096205:+] 0.6525 125 0 -17.85 -0.3358 MIMAT0003119 rno-miR-224 362301 Tmub1 auUUGCCU-UGGU--GAU-CACU-GAAc |:|||| :||| | | |||| ||| uuAGCGGAGGCCACCCCAUGUGAUCUUc 2 22 156 183 [rn4:4:6096110-6096137:+] 0.6769 122 0 -20.93 -0.5013

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G101457 Tmub1 Rattus norvegicus 362301

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Tmub1 RAID00382176 rno-miR-3551-5p miRNA MIMAT0017809 Tmub1 mRNA 362301 Prediction 0.1828 Tmub1 RAID00517530 rno-miR-423-5p miRNA MIMAT0017305 Tmub1 mRNA 362301 Prediction 0.1828 Tmub1 RAID00525224 rno-miR-770-3p miRNA MIMAT0017317 Tmub1 mRNA 362301 Prediction 0.1828 Tmub1 RAID01126053 rno-miR-27a-3p miRNA MIMAT0000799 Tmub1 mRNA 362301 Prediction 0.2202 Tmub1 RAID02439877 rno-miR-361-3p miRNA MIMAT0017199 Tmub1 mRNA 362301 Prediction 0.1828 Tmub1 RAID02989828 rno-miR-3573-5p miRNA MIMAT0017856 Tmub1 mRNA 362301 Prediction 0.1828 Tmub1 RAID03282804 rno-miR-224-5p miRNA MIMAT0003119 Tmub1 mRNA 362301 Prediction 0.1828 Tmub1 RAID03301645 rno-miR-383-5p miRNA MIMAT0003114 Tmub1 mRNA 362301 Prediction 0.1828 Tmub1 RAID03363411 rno-miR-27b-3p miRNA MIMAT0000798 Tmub1 mRNA 362301 Prediction 0.2202 Tmub1 RAID03932003 rno-miR-128-3p miRNA MIMAT0000834 Tmub1 mRNA 362301 Prediction 0.1828 Tmub1 RAID03999363 rno-miR-214-3p miRNA MIMAT0000885 Tmub1 mRNA 362301 Prediction 0.1828 Tmub1 RAID04019116 rno-miR-216a-5p miRNA MIMAT0000886 Tmub1 mRNA 362301 Prediction 0.1828