DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000561 rno-miR-327 362566 Lrrc41 ugGGAGUACGGGGAGUUCc |:||| |:||||||| ugCUUCA--CUCCUCAAGc 2 18 304 320 [rn4:5:136234355-136234371:-] 0.5563 154 7 -19.77 -0.2716 MIMAT0004717 rno-miR-29b-2* 362566 Lrrc41 gauucggugguacacUUUGGUc |||||| cuuuuuuuuuuuuuuAAACCAa 2 8 429 450 [rn4:5:136234225-136234246:-] 0.5811 120 6 -4.85 -0.6667 MIMAT0000898 rno-miR-296* 362566 Lrrc41 uguccuaacucccCCCCGGGa ||||||| ------------uGGGGCCCa 2 9 1 9 [rn4:5:136234666-136234674:-] 0.6891 140 7 -15.99 -0.7637 MIMAT0000900 rno-miR-298 362566 Lrrc41 cccuucuuGUCGGGAGGA-GACGg || :|||||| |||| gauucuguCA-UCCUCCUCCUGCc 2 16 85 107 [rn4:5:136234568-136234590:-] 0.5855 121 0 -23.47 -0.8317 MIMAT0000901 rno-miR-299 362566 Lrrc41 uacauacacccugccAUUUGGu |||||| ucuuuuuuuuuuuuuUAAACCa 2 8 428 449 [rn4:5:136234226-136234247:-] 0.5811 120 6 -6.54 -0.6621 MIMAT0001320 rno-miR-421 362566 Lrrc41 guuguuuguaAAUUACUCCGg | |||||||| ccuggaggccUCAAUGAGGCc 2 12 154 174 [rn4:5:136234501-136234521:-] 0.5889 147 7 -16.51 -0.1605 MIMAT0003177 rno-miR-541 362566 Lrrc41 ucaCACUGGUUGUAGUCUUAGGGAa || | ::| || ||||||| cugGUCCCGGGCCUC--AAUCCCUu 2 23 388 410 [rn4:5:136234265-136234287:-] 0.5783 147 7 -15.63 -0.4119 MIMAT0005308 rno-miR-380 362566 Lrrc41 gcguACAAGAUACCAGUUGGUa | ||:| | | ||||| cuuuUUUUUUUUUUUAAACCAa 2 19 429 450 [rn4:5:136234225-136234246:-] 0.5811 122 0 -4.62 -0.1867 MIMAT0005319 rno-miR-484 362566 Lrrc41 uagcccucCCCUGACUCGG-ACu ||||||||||| || agcuugcaGGGACUGAGCCAUGg 2 15 39 61 [rn4:5:136234614-136234636:-] 0.5855 134 0 -27.57 -0.1223 MIMAT0005322 rno-miR-532-5p 362566 Lrrc41 ugUCAGGAUGUGAGUUCCGUAc || || || ||||||| ugAGGCC--CAGCAAAGGCAUu 2 21 168 187 [rn4:5:136234488-136234507:-] 0.5923 145 7 -11.81 -0.1692 MIMAT0012823 rno-miR-490 362566 Lrrc41 gucguaccucaggaGGUCCAAc ||||||| cugggaaccccaggCCAGGUUa 2 9 231 252 [rn4:5:136234423-136234444:-] 0.5343 140 7 -17.84 -0.2020 MIMAT0012829 rno-miR-511 362566 Lrrc41 acUCACGUCUCGUUUUCCGUa || || ||| ||||||| ugAG-GCCCAGC-AAAGGCAu 2 20 168 186 [rn4:5:136234489-136234507:-] 0.5923 151 7 -21.88 -0.1067 MIMAT0012846 rno-miR-201 362566 Lrrc41 uuCUUGUUACGGAA-UGACUCa |: | ||:||| |||||| ugGGUCUCUGUCUUCACUGAGg 2 20 253 274 [rn4:5:136234401-136234422:-] 0.5343 127 6 -17.57 -0.3731 MIMAT0000573 rno-miR-140 362566 Lrrc41 gaugguaucccauuUUGGUGAc ||||||| ugcccagaaccccuAACCACUg 2 9 64 85 [rn4:5:136234590-136234611:-] 0.5855 140 7 -17.05 -0.4421 MIMAT0000600 rno-miR-129 362566 Lrrc41 cguucgggucuggcGUUUUUc |||||| uuuuuuuuuuaaacCAAAAAa 2 8 434 454 [rn4:5:136234221-136234241:-] 0.5811 120 6 -5.04 -0.4677 MIMAT0000777 rno-let-7e 362566 Lrrc41 uugAUAUGUUGGAGGAUGG-AGu |||| :| : |||||| || cagUAUAGGAAUGCCUACCAUCa 2 20 339 361 [rn4:5:136234314-136234336:-] 0.5783 127 0 -17.45 -0.2213 MIMAT0000779 rno-let-7i 362566 Lrrc41 uuGUCGUGU--UUGAUGAUGG-AGu |||:|:| ||: ||||| || agCAGUAUAGGAAUGCCUACCAUCa 2 21 337 361 [rn4:5:136234314-136234338:-] 0.5783 123 0 -21.53 -0.2213 MIMAT0000781 rno-miR-9 362566 Lrrc41 aguaugucgaucuaUUGGUUUcu ||||||| uuuuuuuuuuuuuaAACCAAAaa 3 10 431 453 [rn4:5:136234222-136234244:-] 0.5811 125 0 -5.82 -0.4253 MIMAT0000794 rno-miR-24 362566 Lrrc41 gacaaGGACG-ACUUGACUCGGu |:||| |:|||||||| gucagCUUGCAGGGACUGAGCCa 2 18 36 58 [rn4:5:136234617-136234639:-] 0.5855 160 7 -28.35 -0.4959 MIMAT0000863 rno-miR-186 362566 Lrrc41 ucggguuuuccucuuAAGAAAc |||||| caugccuuuauuccuUUCUUUu 2 8 412 433 [rn4:5:136234242-136234263:-] 0.5797 120 6 -6.60 -0.1679 MIMAT0003208 rno-miR-374 362566 Lrrc41 gugaaucgUCCAACAUAAUAUa || || | ||||| accaaaaaAGUUUUUCUUAUAa 2 15 446 467 [rn4:5:136234208-136234229:-] 0.5811 122 0 -1.01 -0.1521 MIMAT0005341 rno-miR-488 362566 Lrrc41 cuGGUUCUUUGU--CGGAAAGUu ||::| || ||||||| ucCCGGGCCUCAAUCCCUUUCAu 2 20 392 414 [rn4:5:136234261-136234283:-] 0.5783 142 7 -15.37 -0.5439 MIMAT0005341 rno-miR-488 362566 Lrrc41 cugguucuuugucGGAAAGuu |||||| ucaugccuuuauuCCUUUCuu 3 9 411 431 [rn4:5:136234244-136234264:-] 0.5797 120 0 -7.65 -0.3176

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G055165 Lrrc41 Rattus norvegicus 362566

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Lrrc41 RAID00140839 rno-miR-23a-5p miRNA MIMAT0004712 Lrrc41 mRNA 362566 Prediction 0.1828 Lrrc41 RAID00152516 rno-let-7e-5p miRNA MIMAT0000777 Lrrc41 mRNA 362566 Prediction 0.1828 Lrrc41 RAID00449604 rno-miR-488-3p miRNA MIMAT0005341 Lrrc41 mRNA 362566 Prediction 0.2202 Lrrc41 RAID00555187 rno-miR-770-3p miRNA MIMAT0017317 Lrrc41 mRNA 362566 Prediction 0.1828 Lrrc41 RAID00865571 rno-miR-3583-5p miRNA MIMAT0017873 Lrrc41 mRNA 362566 Prediction 0.1828 Lrrc41 RAID01129872 rno-let-7i-5p miRNA MIMAT0000779 Lrrc41 mRNA 362566 Prediction 0.1828 Lrrc41 RAID01551580 rno-miR-327 miRNA MIMAT0000561 Lrrc41 mRNA 362566 Prediction 0.1828 Lrrc41 RAID01629414 rno-miR-374-5p miRNA MIMAT0003208 Lrrc41 mRNA 362566 Prediction 0.1828 Lrrc41 RAID01818036 rno-miR-409b miRNA MIMAT0017870 Lrrc41 mRNA 362566 Prediction 0.1828 Lrrc41 RAID01948006 rno-miR-24-3p miRNA MIMAT0000794 Lrrc41 mRNA 362566 Prediction 0.1828 Lrrc41 RAID02693963 rno-miR-129-5p miRNA MIMAT0000600 Lrrc41 mRNA 362566 Prediction 0.1828 Lrrc41 RAID02754649 rno-miR-140-5p miRNA MIMAT0000573 Lrrc41 mRNA 362566 Prediction 0.1828 Lrrc41 RAID02817972 rno-miR-9a-5p miRNA MIMAT0000781 Lrrc41 mRNA 362566 Prediction 0.1828 Lrrc41 RAID03717565 rno-miR-186-5p miRNA MIMAT0000863 Lrrc41 mRNA 362566 Prediction 0.1828