DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004648 rno-miR-339-3p 365022 Rnf166 accgagacAGCAGCUCCG-CGAGu |:||:| ||| |||| ccagccaaUUGUUGUGGCUGCUCu 2 16 740 763 [rn4:19:52756045-52756068:-] 0.4835 123 0 -20.22 -0.1014 MIMAT0000591 rno-miR-343 365022 Rnf166 agACCCGUGU---GCCUCCCUCu |||| || : ||||||| ugUGGGAUCAGUUUAGAGGGAGg 2 19 574 596 [rn4:19:52756212-52756234:-] 0.4835 145 7 -21.68 -0.3810 MIMAT0000604 rno-miR-350 365022 Rnf166 cacuuucaCAU-ACCCGAAACACUu ||| ||| :||||||| agcauuugGUACUGGCUUUUGUGAu 2 17 372 396 [rn4:19:52756412-52756436:-] 0.7379 159 7 -15.88 -0.9124 MIMAT0004712 rno-miR-23a* 365022 Rnf166 uuuagggUAGGGGUCCUUGGGg || :::|||||||| uuuugugAUAUUUAGGAACCCu 2 16 388 409 [rn4:19:52756399-52756420:-] 0.7379 155 7 -19.71 -1.1366 MIMAT0004718 rno-miR-29a* 365022 Rnf166 gacuuguGGUUUUCUUUAGUca ::|||| |||||| auauuuuUUAAAAAAAAUCAaa 3 16 542 563 [rn4:19:52756245-52756266:-] 0.5766 139 0 -6.12 -0.3218 MIMAT0004721 rno-miR-30b-3p 365022 Rnf166 cugCAUUUGUAGG--UGUAGGGUc | |:| |||| :||||||| ccaGAAGAAAUCCUAGCAUCCCAg 2 20 720 743 [rn4:19:52756065-52756088:-] 0.4835 158 7 -21.06 -0.1637 MIMAT0004739 rno-miR-204* 365022 Rnf166 uugcagggaaACGGAAGGGUCg || :||||||| uuaaauaaagUG-UUUCCCAGc 2 13 966 986 [rn4:19:52755822-52755842:-] 0.5277 142 7 -15.98 -0.5165 MIMAT0004743 rno-miR-300-5p 365022 Rnf166 ugUUUCCUAUUGGAGAGAAGuu |||| |::: |||||| acAAAG--CAGUUACUCUUCua 3 21 464 483 [rn4:19:52756325-52756344:-] 0.7379 129 0 -13.72 -0.1064 MIMAT0003116 rno-miR-501 365022 Rnf166 aaagugggucCCUGUUUCCUAa ||| ||||||| gucuguguguGGA-AAAGGAUa 2 13 300 320 [rn4:19:52756488-52756508:-] 0.4315 146 7 -12.01 -0.2748 MIMAT0004791 rno-miR-379* 365022 Rnf166 caAUCACCUGGUACAAUGUAUc || |||| ||| ||||| | uuUA-UGGAGCAU-UUACAAAg 2 21 520 539 [rn4:19:52756269-52756288:-] 0.7038 132 0 -14.84 -0.1106 MIMAT0005280 rno-miR-743b 365022 Rnf166 agauaAGUCAUACCACAGAAAg | ||| || ||||||| uggcaUAAGU-UGCUGUCUUUu 2 18 936 956 [rn4:19:52755852-52755872:-] 0.5277 155 7 -11.11 -0.5741 MIMAT0005288 rno-miR-880 365022 Rnf166 agaugaGUCUU--ACUUACCUCau ||| | | |||||| gcagagCAGUAUUUUUAUGGAGca 3 17 507 530 [rn4:19:52756278-52756301:-] 0.7379 123 0 -12.28 -0.6035 MIMAT0005290 rno-miR-883 365022 Rnf166 uaugacucucuacaaCGUCAAu |||||| uagagcaaagacaaaGCAGUUa 2 8 454 475 [rn4:19:52756333-52756354:-] 0.7379 120 6 -12.60 -0.1993 MIMAT0005301 rno-miR-188 365022 Rnf166 ggGAGGUGGUACGUUCCCUAc ||||| | | |||||||| caCUCCAGCCU-CAAGGGAUa 2 20 41 60 [rn4:19:52756748-52756767:-] 0.4882 165 7 -23.93 -0.1523 MIMAT0005317 rno-miR-463 365022 Rnf166 gauggguuuaaccgcAGAUAGu |||||| ggaacccugcguuuuUCUAUCu 2 8 402 423 [rn4:19:52756385-52756406:-] 0.7379 120 6 -13.84 -0.1280 MIMAT0005333 rno-miR-742 365022 Rnf166 aaauggguUGUACC---ACCGAAAg |: ||| ||||||| ccgugagcAUUUGGUACUGGCUUUu 2 15 367 391 [rn4:19:52756417-52756441:-] 0.7379 141 7 -13.62 -0.8695 MIMAT0005337 rno-miR-760-3p 365022 Rnf166 aggGGUGUCUGGGUCUCGGc :||| : |||||||| cugUCACCUG-CCAGAGCCa 2 18 809 827 [rn4:19:52755981-52755999:-] 0.5277 147 7 -19.92 -0.2238 MIMAT0012822 rno-miR-202 365022 Rnf166 uuucuUCAUAUACGUAUCCUu || | | ||||||| cucucAGCAGA--CAUAGGAc 2 17 760 778 [rn4:19:52756030-52756048:-] 0.5026 141 7 -9.54 -0.1177 MIMAT0012826 rno-miR-220 365022 Rnf166 uccaGAGACUGU-GACAC-CACc | :|||:: ||||| ||| ccagCCUUGAUGUCUGUGUGUGg 2 18 289 311 [rn4:19:52756497-52756519:-] 0.4315 120 0 -19.82 -0.3548 MIMAT0012843 rno-miR-876 365022 Rnf166 accACUA-AGUGUC-UCUUUAGGu |||| | ||| |||||||| ugaUGAUGACCCAGAAGAAAUCCu 2 20 710 733 [rn4:19:52756075-52756098:-] 0.4835 161 7 -18.12 -0.5724 MIMAT0012847 rno-miR-293 365022 Rnf166 guuucACAGUGU-GUCAAA-CUCa ||| : | |||||| ||| acacuUGUGGGAUCAGUUUAGAGg 2 18 569 592 [rn4:19:52756216-52756239:-] 0.4835 120 0 -15.00 -0.1996 MIMAT0000589 rno-miR-342-3p 365022 Rnf166 ugcccacgcuaAAGACACACUcu | |||||||| uuucuaucuuaUCCUGUGUGAua 3 13 415 437 [rn4:19:52756371-52756393:-] 0.7379 132 0 -11.85 -0.1946 MIMAT0000600 rno-miR-129 365022 Rnf166 cguucgggucuggcGUUUUUc |||||| uuuuuaaaaaaaauCAAAAAu 2 8 546 566 [rn4:19:52756242-52756262:-] 0.5766 120 6 -1.92 -0.1793 MIMAT0000784 rno-miR-15b 365022 Rnf166 acauUUGGU--ACUACA-CGACGAu |:||| || ||| |||||| ucccAGCCAAUUGUUGUGGCUGCUc 2 19 738 762 [rn4:19:52756046-52756070:-] 0.4835 129 6 -17.04 -0.1955 MIMAT0000815 rno-miR-34a 365022 Rnf166 uguugGUCGAUUCUGU-GACGGu |||| || || ||||| -ggcaCAGCCUAGCCACCUGCCu 2 18 1 22 [rn4:19:52756786-52756807:-] 0.5847 125 0 -20.05 -0.1086 MIMAT0000827 rno-miR-122 365022 Rnf166 guuugugguaaCAGUGUGAGGu | |||||||| cuggggcagaaGACACACUCCa 2 12 26 47 [rn4:19:52756761-52756782:-] 0.4882 147 7 -19.11 -0.3186 MIMAT0004729 rno-miR-125a-3p 365022 Rnf166 ccgaggguucuuggAGUGGACa ||||||| cguucuguccccugUCACCUGc 2 9 798 819 [rn4:19:52755989-52756010:-] 0.5247 140 7 -17.84 -0.1177 MIMAT0000842 rno-miR-136 365022 Rnf166 agguaguaguuuuguuUACCUCa |||||| gcagagcaguauuuuuAUGGAGc 2 8 507 529 [rn4:19:52756279-52756301:-] 0.7379 120 6 -15.88 -0.4733 MIMAT0000863 rno-miR-186 365022 Rnf166 ucggguUUUCCUCUUAAGAAAc |||| |||:||| auuuacAAAGUUAUAUUUUUUa 2 17 530 551 [rn4:19:52756257-52756278:-] 0.7038 132 0 -5.28 -0.2542 MIMAT0000870 rno-miR-195 365022 Rnf166 cgguuaUAAAGACA-CGACGAu ||| :||| |||||| cagccaAUUGUUGUGGCUGCUc 2 16 741 762 [rn4:19:52756046-52756067:-] 0.4835 127 6 -21.73 -0.1901 MIMAT0000873 rno-miR-200c 365022 Rnf166 gguaguaaugggcCGUCAUAAu |||||||| uugacuaggcagaGCAGUAUUu 2 10 499 520 [rn4:19:52756288-52756309:-] 0.7379 145 7 -11.97 -0.8831 MIMAT0000875 rno-miR-200b 365022 Rnf166 caguAGUAAU-GGUC-CGUCAUAAu | | || ||| |||||||| uguuUGACUAGGCAGAGCAGUAUUu 2 20 496 520 [rn4:19:52756288-52756312:-] 0.7379 153 7 -15.30 -0.8831 MIMAT0000891 rno-miR-222 365022 Rnf166 uggGUCAUCGGUCUACAUCGa ||||| :: ||| ||| gagCAGUAUUUUUAUGGAGCa 2 19 510 530 [rn4:19:52756278-52756298:-] 0.7379 126 0 -11.72 -0.2309 MIMAT0001538 rno-miR-429 365022 Rnf166 ugccguaaugGUCU-GUCAUAAu |||| ||||||| uuugacuaggCAGAGCAGUAUUu 2 13 498 520 [rn4:19:52756288-52756310:-] 0.7379 151 7 -13.76 -0.8831 MIMAT0003123 rno-miR-377 365022 Rnf166 gguuuucAACGGAAACACACUa || :| ||||||| uucuaucUUAUC-CUGUGUGAu 2 16 416 436 [rn4:19:52756372-52756392:-] 0.7379 141 7 -12.19 -1.0119 MIMAT0003203 rno-miR-485 365022 Rnf166 cuuaaGUAGUGCCGGUCGGAGa || ||| |||||||| gaagaCA-CAC-UCCAGCCUCa 2 18 34 53 [rn4:19:52756755-52756774:-] 0.4882 149 7 -21.01 -0.1539 MIMAT0003383 rno-miR-497 365022 Rnf166 auGUUUGGU--GUCACA-CGACGAc | |:||| :: ||| |||||| ucCCAGCCAAUUGUUGUGGCUGCUc 2 21 738 762 [rn4:19:52756046-52756070:-] 0.4835 123 6 -17.56 -0.1991 MIMAT0005311 rno-miR-410 365022 Rnf166 uguccgguagacaCAAUAUAa ||||||| gagcauuuacaaaGUUAUAUu 2 9 526 546 [rn4:19:52756262-52756282:-] 0.7038 140 7 -8.26 -1.3124

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G100903 Rnf166 Rattus norvegicus 365022

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Rnf166 RAID00059584 rno-miR-3120 miRNA MIMAT0017900 Rnf166 mRNA 365022 Prediction 0.1828 Rnf166 RAID00230569 rno-miR-664-2-5p miRNA MIMAT0017229 Rnf166 mRNA 365022 Prediction 0.1828 Rnf166 RAID00505326 rno-miR-122-5p miRNA MIMAT0000827 Rnf166 mRNA 365022 Prediction 0.1828 Rnf166 RAID00543581 rno-miR-672-3p miRNA MIMAT0017312 Rnf166 mRNA 365022 Prediction 0.1828 Rnf166 RAID00743788 rno-miR-135b-5p miRNA MIMAT0000611 Rnf166 mRNA 365022 Prediction 0.1828 Rnf166 RAID00804733 rno-miR-23b-5p miRNA MIMAT0017099 Rnf166 mRNA 365022 Prediction 0.1828 Rnf166 RAID00852484 rno-miR-125a-3p miRNA MIMAT0004729 Rnf166 mRNA 365022 Prediction 0.1828 Rnf166 RAID01013911 rno-miR-342-3p miRNA MIMAT0000589 Rnf166 mRNA 365022 Prediction 0.1828 Rnf166 RAID01060491 rno-miR-195-5p miRNA MIMAT0000870 Rnf166 mRNA 365022 Prediction 0.1828 Rnf166 RAID01220106 rno-miR-222-3p miRNA MIMAT0000891 Rnf166 mRNA 365022 Prediction 0.1828 Rnf166 RAID01227748 rno-miR-200b-3p miRNA MIMAT0000875 Rnf166 mRNA 365022 Prediction 0.1828 Rnf166 RAID01296934 rno-miR-664-1-5p miRNA MIMAT0017228 Rnf166 mRNA 365022 Prediction 0.1828 Rnf166 RAID01344886 rno-miR-383-3p miRNA MIMAT0017197 Rnf166 mRNA 365022 Prediction 0.1828 Rnf166 RAID01559566 rno-miR-3557-3p miRNA MIMAT0017820 Rnf166 mRNA 365022 Prediction 0.1828 Rnf166 RAID01635600 rno-miR-497-5p miRNA MIMAT0003383 Rnf166 mRNA 365022 Prediction 0.1828 Rnf166 RAID01845567 rno-miR-485-5p miRNA MIMAT0003203 Rnf166 mRNA 365022 Prediction 0.1828 Rnf166 RAID01888569 rno-miR-34a-5p miRNA MIMAT0000815 Rnf166 mRNA 365022 Prediction 0.1828 Rnf166 RAID01906109 rno-miR-200c-3p miRNA MIMAT0000873 Rnf166 mRNA 365022 Prediction 0.1828 Rnf166 RAID01918024 rno-miR-350 miRNA MIMAT0000604 Rnf166 mRNA 365022 Prediction 0.1828 Rnf166 RAID02031882 rno-miR-129-5p miRNA MIMAT0000600 Rnf166 mRNA 365022 Prediction 0.1828 Rnf166 RAID02263195 rno-miR-1956-3p miRNA MIMAT0035736 Rnf166 mRNA 365022 Prediction 0.1828 Rnf166 RAID02630782 rno-miR-760-3p miRNA MIMAT0005337 Rnf166 mRNA 365022 Prediction 0.1828 Rnf166 RAID02666609 rno-miR-410-3p miRNA MIMAT0005311 Rnf166 mRNA 365022 Prediction 0.1828 Rnf166 RAID02790536 rno-miR-377-3p miRNA MIMAT0003123 Rnf166 mRNA 365022 Prediction 0.1828 Rnf166 RAID02952591 rno-miR-135a-5p miRNA MIMAT0000841 Rnf166 mRNA 365022 Prediction 0.1828 Rnf166 RAID02968322 rno-miR-743b-3p miRNA MIMAT0005280 Rnf166 mRNA 365022 Prediction 0.1828 Rnf166 RAID03027275 rno-miR-186-5p miRNA MIMAT0000863 Rnf166 mRNA 365022 Prediction 0.1828 Rnf166 RAID03369997 rno-miR-3594-5p miRNA MIMAT0017898 Rnf166 mRNA 365022 Prediction 0.1828 Rnf166 RAID03398729 rno-miR-429 miRNA MIMAT0001538 Rnf166 mRNA 365022 Prediction 0.1828 Rnf166 RAID03540595 rno-miR-23a-5p miRNA MIMAT0004712 Rnf166 mRNA 365022 Prediction 0.1828 Rnf166 RAID03636853 rno-miR-188-3p miRNA MIMAT0017297 Rnf166 mRNA 365022 Prediction 0.1828 Rnf166 RAID03778140 rno-miR-15b-5p miRNA MIMAT0000784 Rnf166 mRNA 365022 Prediction 0.1828 Rnf166 RAID03889537 rno-miR-136-5p miRNA MIMAT0000842 Rnf166 mRNA 365022 Prediction 0.1828