DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004705 rno-let-7b* 171501 Rnf38 cccuuccgucauccaACAUAUc |||||| guguuccucaucacaUGUAUAu 2 8 29 50 [rn4:5:60601039-60601060:-] 0.7740 120 6 -4.38 -0.1063 MIMAT0004731 rno-miR-125b* 171501 Rnf38 uccaggguucuCGGACUGAAca |: |||||| uucuuugcacuGUGUGACUUaa 3 12 120 141 [rn4:5:60600948-60600969:-] 0.7740 123 0 -8.53 -0.2263 MIMAT0005446 rno-miR-219-2-3p 171501 Rnf38 ugucuacaggUCG-GUGUUAAga ||| :|||||| caacuauaaaAGCUUACAAUUag 3 13 143 165 [rn4:5:60600924-60600946:-] 0.7740 127 0 -8.17 -0.2015 MIMAT0003195 rno-miR-376b-5p 171501 Rnf38 auugGUAUCUUCCUUAUAGGUg :||| | ||| |||||| caugUAUAUAUGGACUAUCCAc 2 19 42 63 [rn4:5:60601026-60601047:-] 0.7740 138 6 -16.29 -0.1353 MIMAT0003207 rno-miR-369-3p 171501 Rnf38 uuucuAGUUG-GUACAUA-AUAa ||| | ||||||| ||| guuccUCAUCACAUGUAUAUAUg 2 17 31 53 [rn4:5:60601036-60601058:-] 0.7740 127 0 -8.96 -1.0734 MIMAT0005278 rno-miR-466b 171501 Rnf38 guACCUGUAUGUGUGU-GUGUAu |||:::| | | || ||||| uuUGGGUGUUC-CUCAUCACAUg 2 21 24 45 [rn4:5:60601044-60601065:-] 0.7740 122 0 -15.52 -1.1652 MIMAT0005279 rno-miR-466c 171501 Rnf38 guACAUGUACGUGUGUAGUGu || :::| | | |||||| uuUGGGUGUUC-CUCAUCACa 2 20 24 43 [rn4:5:60601046-60601065:-] 0.7740 121 6 -13.64 -0.1666 MIMAT0005308 rno-miR-380 171501 Rnf38 gcGUACA-AGAUACCAGUUGGUa ::||| || | |||||:| acUGUGUGACU-UAAUCAACUAu 2 21 128 149 [rn4:5:60600940-60600961:-] 0.7740 129 0 -12.04 -0.1804 MIMAT0012830 rno-miR-504 171501 Rnf38 cugucucacgucuggUCCCAGa |||||| ccucccuuuaccaaaAGGGUCa 2 8 90 111 [rn4:5:60600978-60600999:-] 0.7740 120 6 -13.29 -0.1059 MIMAT0012854 rno-miR-764 171501 Rnf38 uccuccuguacaCUCGUGg |||||| ---ccagccuaaGAGCACa 2 8 1 16 [rn4:5:60601073-60601088:-] 0.7740 120 6 -10.19 -0.3689 MIMAT0000552 rno-miR-301a 171501 Rnf38 cgaAACUGUUAUGAUAACGUGAc | ||| | || ||||||| caaUGGACCUUUCU-UUGCACUg 2 21 110 131 [rn4:5:60600958-60600979:-] 0.7740 154 7 -17.24 -1.1263 MIMAT0000579 rno-miR-148b-3p 171501 Rnf38 uguuucAAGACACUACGUGACu |||| | ||||||| ggaccuUUCU-U--UGCACUGu 2 17 114 132 [rn4:5:60600957-60600975:-] 0.7740 143 7 -12.59 -1.2443 MIMAT0000589 rno-miR-342-3p 171501 Rnf38 ugcccacgcuaaaGACACACUcu |||||||| accuuucuuugcaCUGUGUGAcu 3 11 116 138 [rn4:5:60600951-60600973:-] 0.7740 130 0 -13.01 -0.5650 MIMAT0000606 rno-miR-7a 171501 Rnf38 uguUGUUUU--AGUG---AUCAGAAGgu |:|||| |:|| |||||||| acuAUAAAAGCUUACAAUUAGUCUUC-- 3 21 145 170 [rn4:5:60600919-60600944:-] 0.7740 142 0 -14.35 -0.5408 MIMAT0000780 rno-miR-7b 171501 Rnf38 uguUGUUUU--AGUGU---UCAGAAGgu |:|||| |:||| ||||||| acuAUAAAAGCUUACAAUUAGUCUUC-- 3 21 145 170 [rn4:5:60600919-60600944:-] 0.7740 142 0 -13.55 -0.5408 MIMAT0000788 rno-miR-19b 171501 Rnf38 agucaaaacguaccuAAACGUGu ||||||| gucaauggaccuuucUUUGCACu 2 9 108 130 [rn4:5:60600959-60600981:-] 0.7740 140 7 -11.99 -0.9403 MIMAT0000789 rno-miR-19a 171501 Rnf38 agucaaaacguaucuAAACGUGu ||||||| gucaauggaccuuucUUUGCACu 2 9 108 130 [rn4:5:60600959-60600981:-] 0.7740 140 7 -9.28 -0.9403 MIMAT0000828 rno-miR-124 171501 Rnf38 ccGUAA-GUGGCGCACGGAAu | || |||:|:||| ||| uuCUUUGCACUGUGUGACUUa 2 19 120 140 [rn4:5:60600949-60600969:-] 0.7740 133 0 -19.68 -0.1583 MIMAT0000834 rno-miR-128 171501 Rnf38 uuucucuggccAAGUGACACu | ||||||| ggaccuuucuuUGCACUGUGu 2 11 114 134 [rn4:5:60600955-60600975:-] 0.7740 142 7 -16.69 -1.0728 MIMAT0000836 rno-miR-130a 171501 Rnf38 uaCGGGAAAAUUGUAACGUGAc | ||||| | ||||||| ugGACCUUU---CUUUGCACUg 2 21 113 131 [rn4:5:60600958-60600976:-] 0.7740 152 7 -17.78 -1.1384 MIMAT0000837 rno-miR-130b 171501 Rnf38 uaCGGGAAAGUAGUAACGUGAc | |||||| | ||||||| ugGACCUUUC-U--UUGCACUg 2 21 113 131 [rn4:5:60600958-60600976:-] 0.7740 155 7 -21.81 -1.1175 MIMAT0000842 rno-miR-136 171501 Rnf38 agGUAGUAGUUUU---GUUUACCUca | |:| ||||| : |||||| ccCUUUACCAAAAGGGUCAAUGGAcc 3 22 93 118 [rn4:5:60600971-60600996:-] 0.7740 136 0 -12.00 -0.1031 MIMAT0000854 rno-miR-152 171501 Rnf38 gguucaaGACAG-UACGUGACu || || ||||||| aauggacCUUUCUUUGCACUGu 2 15 111 132 [rn4:5:60600957-60600978:-] 0.7740 145 7 -15.63 -1.2535 MIMAT0000888 rno-miR-218 171501 Rnf38 uguaccaaucuagUUCGUGUu :|||||| ----ccagccuaaGAGCACAg 2 9 1 17 [rn4:5:60601072-60601088:-] 0.7740 124 6 -9.80 -0.4735 MIMAT0003119 rno-miR-224 171501 Rnf38 auuugccuugGUGAU-CACUGAAc ||||: ||||||| ccuuucuuugCACUGUGUGACUUa 2 14 117 140 [rn4:5:60600949-60600972:-] 0.7740 152 7 -15.54 -1.3234 MIMAT0003123 rno-miR-377 171501 Rnf38 gguuuucAACGGAAACACACUa ||| | ||||||| ccuuucuUUG-CACUGUGUGAc 2 16 117 137 [rn4:5:60600952-60600972:-] 0.7740 145 7 -13.89 -1.1555 MIMAT0003381 rno-miR-499 171501 Rnf38 uuuguAGUGACGUUCAGAAuu |:|| : |||||| aaagcUUACAAUUAGUCUUc- 3 17 151 170 [rn4:5:60600919-60600938:-] 0.7740 128 0 -10.54 -0.5337 MIMAT0005304 rno-miR-301b 171501 Rnf38 cgaAACUGUUAUGGUAACGUGAc | ||| | :| ||||||| caaUGGAC-CUUUCUUUGCACUg 2 21 110 131 [rn4:5:60600958-60600979:-] 0.7740 150 7 -17.04 -1.1426 MIMAT0005339 rno-miR-873 171501 Rnf38 uccucUGAGUGUUCAAGGAcg ::|:: : |||||| auuuaGUUUGGGUGUUCCUca 3 17 18 38 [rn4:5:60601051-60601071:-] 0.7740 124 0 -9.06 -0.1976

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Rnf38 RAID00669537 rno-miR-499-5p miRNA MIMAT0003381 Rnf38 mRNA 171501 Prediction 0.1828 Rnf38 RAID00763484 rno-miR-148b-3p miRNA MIMAT0000579 Rnf38 mRNA 171501 Prediction 0.2202 Rnf38 RAID00810169 rno-miR-301b-3p miRNA MIMAT0005304 Rnf38 mRNA 171501 Prediction 0.2381 Rnf38 RAID00986923 rno-miR-130b-3p miRNA MIMAT0000837 Rnf38 mRNA 171501 Prediction 0.2381 Rnf38 RAID01122398 rno-miR-7b miRNA MIMAT0000780 Rnf38 mRNA 171501 Prediction 0.1828 Rnf38 RAID01553670 rno-miR-672-3p miRNA MIMAT0017312 Rnf38 mRNA 171501 Prediction 0.1828 Rnf38 RAID01685060 rno-miR-19b-3p miRNA MIMAT0000788 Rnf38 mRNA 171501 Prediction 0.2381 Rnf38 RAID01757131 rno-miR-377-3p miRNA MIMAT0003123 Rnf38 mRNA 171501 Prediction 0.1828 Rnf38 RAID02037883 rno-miR-208a-5p miRNA MIMAT0017155 Rnf38 mRNA 171501 Prediction 0.1828 Rnf38 RAID02383013 rno-miR-466c-3p miRNA MIMAT0017287 Rnf38 mRNA 171501 Prediction 0.1828 Rnf38 RAID02538535 rno-miR-1193-5p miRNA MIMAT0017858 Rnf38 mRNA 171501 Prediction 0.1828 Rnf38 RAID02567051 rno-miR-471-3p miRNA MIMAT0017310 Rnf38 mRNA 171501 Prediction 0.1828 Rnf38 RAID02639207 rno-miR-208b-5p miRNA MIMAT0017844 Rnf38 mRNA 171501 Prediction 0.1828 Rnf38 RAID02704432 rno-miR-873-5p miRNA MIMAT0005339 Rnf38 mRNA 171501 Prediction 0.1828 Rnf38 RAID02747956 rno-miR-130a-3p miRNA MIMAT0000836 Rnf38 mRNA 171501 Prediction 0.2381 Rnf38 RAID02828833 rno-miR-136-5p miRNA MIMAT0000842 Rnf38 mRNA 171501 Prediction 0.1828 Rnf38 RAID03143624 rno-miR-7a-5p miRNA MIMAT0000606 Rnf38 mRNA 171501 Prediction 0.1828 Rnf38 RAID03214651 rno-miR-218a-5p miRNA MIMAT0000888 Rnf38 mRNA 171501 Prediction 0.1828 Rnf38 RAID03372635 rno-miR-224-5p miRNA MIMAT0003119 Rnf38 mRNA 171501 Prediction 0.2202 Rnf38 RAID03406030 rno-miR-148a-3p miRNA MIMAT0035725 Rnf38 mRNA 171501 Prediction 0.1828 Rnf38 RAID03536754 rno-miR-19a-3p miRNA MIMAT0000789 Rnf38 mRNA 171501 Prediction 0.2381 Rnf38 RAID03686321 rno-miR-466b-2-3p miRNA MIMAT0017286 Rnf38 mRNA 171501 Prediction 0.2202 Rnf38 RAID03776324 rno-miR-301a-3p miRNA MIMAT0000552 Rnf38 mRNA 171501 Prediction 0.2381 Rnf38 RAID03798260 rno-miR-124-3p miRNA MIMAT0000828 Rnf38 mRNA 171501 Prediction 0.1828 Rnf38 RAID03872006 rno-miR-466b-4-3p miRNA MIMAT0037262 Rnf38 mRNA 171501 Prediction 0.1828 Rnf38 RAID04027182 rno-miR-128-3p miRNA MIMAT0000834 Rnf38 mRNA 171501 Prediction 0.2202 Rnf38 RAID04029477 rno-miR-152-3p miRNA MIMAT0000854 Rnf38 mRNA 171501 Prediction 0.2202 Rnf38 RAID04050452 rno-miR-342-3p miRNA MIMAT0000589 Rnf38 mRNA 171501 Prediction 0.1828