DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000547 rno-miR-322* 309035 Dcun1d3 acaACGUCGCGAAGUACAAa ||| :|: ||||||| aaaUGC--UGUAUCAUGUUu 2 18 141 158 [rn4:1:178172532-178172549:-] 0.7486 146 7 -12.31 -1.2015 MIMAT0000599 rno-miR-349 309035 Dcun1d3 ucuccaauucugucgUCCCGAc |||||| ugccuuguauuugaaAGGGCUc 2 8 117 138 [rn4:1:178172552-178172573:-] 0.7486 120 6 -9.71 -0.1148 MIMAT0000601 rno-miR-129* 309035 Dcun1d3 uacGAAAAACCCCAUUCCCGAa ||| | | ||||||| ugcCUUGUAUUUGAAAGGGCUc 2 20 117 138 [rn4:1:178172552-178172573:-] 0.7486 147 7 -12.05 -0.9592 MIMAT0004711 rno-miR-21* 309035 Dcun1d3 cugUCGGGUAGCUGACGACAac :||:| | | |||||| aagGGCUC-UAAAAUGCUGUau 3 20 131 151 [rn4:1:178172539-178172559:-] 0.7486 129 0 -13.58 -0.2111 MIMAT0003153 rno-miR-24-1* 309035 Dcun1d3 gacUAUAGUCGAGUCAUCCGUg :||||| |: |||||| gcuGUAUCAUGUU-UUAGGCAc 2 20 145 165 [rn4:1:178172525-178172545:-] 0.7486 125 6 -22.13 -0.4245 MIMAT0005441 rno-miR-24-2* 309035 Dcun1d3 ugACAAAGUCGAGUCAUCCGUg ||| ||| |: |||||| gcUGUAUCAUGUU-UUAGGCAc 2 21 145 165 [rn4:1:178172525-178172545:-] 0.7486 126 6 -21.46 -0.4277 MIMAT0000813 rno-miR-34b 309035 Dcun1d3 guuAGUCGAUUAAUGUGACGGAu ||| || || | |||||| cuuUCACCU--UU-CUCUGCCUu 2 21 103 122 [rn4:1:178172568-178172587:-] 0.7486 123 6 -12.37 -0.2127 MIMAT0000897 rno-miR-292-3p 309035 Dcun1d3 ugugaguuuuggaccgCCGUGAa |||||| gcuguaucauguuuuaGGCACUu 2 8 145 167 [rn4:1:178172523-178172545:-] 0.7486 120 6 -12.84 -0.3814 MIMAT0000900 rno-miR-298 309035 Dcun1d3 cccuucuuGUCGGGAGGAGACGg || ||:|:|||||| ucuacuuuCA-CCUUUCUCUGCc 2 16 99 120 [rn4:1:178172570-178172591:-] 0.7486 141 6 -23.76 -0.3102 MIMAT0004743 rno-miR-300-5p 309035 Dcun1d3 uguuuccuauugGAGAGAAGUu ||:|||||| auguuuuaggcaCUUUCUUCAu 2 11 153 174 [rn4:1:178172516-178172537:-] 0.7486 134 6 -14.33 -0.3949 MIMAT0012825 rno-miR-105 309035 Dcun1d3 uggugucuguAGACUCGUGAAc |:| :|||||| uguaucauguUUUAGGCACUUu 2 13 147 168 [rn4:1:178172522-178172543:-] 0.7486 132 6 -12.60 -0.3706 MIMAT0012843 rno-miR-876 309035 Dcun1d3 accacuaaguguCUCUUUAGGu |:||||||| cuuuuuggggguGGGAAAUCCc 2 11 203 224 [rn4:1:178172466-178172487:-] 0.7119 146 7 -15.33 -0.2303 MIMAT0012848 rno-miR-294 309035 Dcun1d3 ucuaucccggaGGUAAAACUc ::||||||: uuuuuuuugggUUAUUUUGGu 2 11 177 197 [rn4:1:178172493-178172513:-] 0.7486 126 0 -9.85 -0.3319 MIMAT0012853 rno-miR-761 309035 Dcun1d3 acacAGUCAAAGUGGGACGACg | || || ||||||| gcacUGAGGAUCUGCCUGCUGc 2 19 20 41 [rn4:1:178172649-178172670:-] 0.7486 150 7 -18.58 -0.1495 MIMAT0000581 rno-miR-338 309035 Dcun1d3 agUUGUUUUAGUGACUACGACcu || ::: || |||||| ugAAAGGGCUCUAAAAUGCUGua 3 22 128 150 [rn4:1:178172540-178172562:-] 0.7486 125 0 -8.55 -0.4098 MIMAT0000602 rno-miR-20a 309035 Dcun1d3 gauggacGUGAUAUUCGUGAAAu :::| ||:||||||| uguaucaUGUUUUAGGCACUUUc 2 17 147 169 [rn4:1:178172521-178172543:-] 0.7486 156 7 -15.93 -1.1956 MIMAT0000784 rno-miR-15b 309035 Dcun1d3 acauuUGG-UACUACAC-GACGAu ||: | ||| || ||||| gcagcACUGAGGAUCUGCCUGCUg 2 18 17 40 [rn4:1:178172650-178172673:-] 0.7486 120 0 -12.38 -0.1865 MIMAT0000786 rno-miR-17-5p 309035 Dcun1d3 gauggacGUGACAUUCGUGAAAc :::| ||:||||||| uguaucaUGUUUUAGGCACUUUc 2 17 147 169 [rn4:1:178172521-178172543:-] 0.7486 156 7 -15.13 -1.1972 MIMAT0000787 rno-miR-18a 309035 Dcun1d3 gaUAGACGUGAUCUACGUGGAAu || | : ||| | |||||| ggAUAUUUUCUACUUUCACCUUu 2 22 91 113 [rn4:1:178172577-178172599:-] 0.7486 129 6 -11.99 -0.1403 MIMAT0000794 rno-miR-24 309035 Dcun1d3 gacAAGGACGACUUGAC-UCGGu | ||||||| ||| |||| aucUGCCUGCUGCCCUGCAGCCa 2 20 29 51 [rn4:1:178172639-178172661:-] 0.7486 135 0 -28.55 -0.7076 MIMAT0000817 rno-miR-93 309035 Dcun1d3 gauggacgugcuugUCGUGAAAc :||||||| uguaucauguuuuaGGCACUUUc 2 10 147 169 [rn4:1:178172521-178172543:-] 0.7486 141 7 -13.63 -1.1989 MIMAT0000824 rno-miR-103 309035 Dcun1d3 agUAUCGGGACAUGUUACGACGa | || || || |||||||: ugAAAGGGCUCUAAAAUGCUGUa 2 22 128 150 [rn4:1:178172540-178172562:-] 0.7486 149 0 -16.15 -0.4067 MIMAT0000825 rno-miR-106b 309035 Dcun1d3 uaGACGUG--ACAG---UCGUGAAAu |||:|: |||: :||||||| ugCUGUAUCAUGUUUUAGGCACUUUc 2 20 144 169 [rn4:1:178172521-178172546:-] 0.7486 149 7 -16.82 -1.1972 MIMAT0000826 rno-miR-107 309035 Dcun1d3 acUAUCGGGACAUGUUACGACGa | || || || |||||||: ugAAAGGGCUCUAAAAUGCUGUa 2 22 128 150 [rn4:1:178172540-178172562:-] 0.7486 149 0 -16.86 -0.4067 MIMAT0000828 rno-miR-124 309035 Dcun1d3 ccGUAAGUGG---CGCACGGAAu | |||||| : |||||| uaCUUUCACCUUUCUCUGCCUUg 2 19 101 123 [rn4:1:178172567-178172589:-] 0.7486 121 6 -16.76 -0.3844 MIMAT0004729 rno-miR-125a-3p 309035 Dcun1d3 ccgaggguucUUGGAGUGGAca | ::|||||| gauauuuucuACUUUCACCUuu 3 13 92 113 [rn4:1:178172577-178172598:-] 0.7486 124 0 -12.49 -0.1174 MIMAT0000833 rno-miR-127 309035 Dcun1d3 ucgguucgagucugcCUAGGCu |||||| cuggaaauuaccgaaGAUCCGg 2 8 71 92 [rn4:1:178172598-178172619:-] 0.7486 120 6 -14.27 -0.1848 MIMAT0000850 rno-miR-144 309035 Dcun1d3 ucauguaguagaUAUGACAu ||:|||| aagggcucuaaaAUGCUGUa 2 9 131 150 [rn4:1:178172540-178172559:-] 0.7486 124 0 -10.80 -0.1586 MIMAT0000862 rno-miR-185 309035 Dcun1d3 aguccuugacGGAAAGAGAGGu ||||||||| | ucuacuuucaCCUUUCUCUGCc 2 13 99 120 [rn4:1:178172570-178172591:-] 0.7486 128 0 -19.01 -0.1102 MIMAT0000863 rno-miR-186 309035 Dcun1d3 ucggguuuuccucuuAAGAAAc |||||| gguuauuuugguuauUUCUUUu 2 8 186 207 [rn4:1:178172483-178172504:-] 0.7486 120 6 -6.80 -0.1108 MIMAT0000885 rno-miR-214 309035 Dcun1d3 gacggacagACACGGACGACa | ||||||||| cacugaggaUCUGCCUGCUGc 2 13 21 41 [rn4:1:178172649-178172669:-] 0.7486 152 7 -21.87 -0.1495 MIMAT0000895 rno-miR-291a-3p 309035 Dcun1d3 ccguguGUUUCACCUUCGUGAAa || : | |:|||||| cuguauCAUGUUUUAGGCACUUu 2 18 146 168 [rn4:1:178172522-178172544:-] 0.7486 133 6 -12.82 -0.3647 MIMAT0001628 rno-miR-433 309035 Dcun1d3 uguggcuccuCGG-GUAGUACua ||: :|||||| gcucuaaaauGCUGUAUCAUGuu 3 13 135 157 [rn4:1:178172533-178172555:-] 0.7486 123 0 -10.06 -0.1312 MIMAT0003176 rno-miR-539 309035 Dcun1d3 ugugugguucCUAUUAAAGAGg |:| ||||||: ggguuauuuuGGUUAUUUCUUu 2 13 185 206 [rn4:1:178172484-178172505:-] 0.7486 132 0 -10.25 -0.1230 MIMAT0003199 rno-miR-381 309035 Dcun1d3 cucucGA-ACGGGAACAUAu || || |||||||| ccuuuCUCUG-CCUUGUAUu 2 15 109 127 [rn4:1:178172563-178172581:-] 0.7486 147 7 -12.28 -0.9130 MIMAT0003211 rno-miR-20b-5p 309035 Dcun1d3 ugGACGUGAUAC-----UCGUGAAAc |||:|: ||| :||||||| ugCUGUAUCAUGUUUUAGGCACUUUc 2 20 144 169 [rn4:1:178172521-178172546:-] 0.7486 150 7 -16.51 -1.1956 MIMAT0005312 rno-miR-411 309035 Dcun1d3 gcaugcgaUAUGCCAGAUGAu |||: |||||| agauccggAUAUUUUCUACUu 2 14 85 105 [rn4:1:178172585-178172605:-] 0.7486 121 6 -10.72 -0.1679 MIMAT0005341 rno-miR-488 309035 Dcun1d3 cugguucuuuGUCGGAAAGuu || |||||| uuucuacuuuCA-CCUUUCuc 3 12 97 116 [rn4:1:178172574-178172593:-] 0.7486 121 0 -8.54 -0.1102 MIMAT0005341 rno-miR-488 309035 Dcun1d3 cugguucuuugucgGAAAGUu |||||| ccggauauuuucuaCUUUCAc 2 8 89 109 [rn4:1:178172581-178172601:-] 0.7486 120 6 -7.01 -0.1869

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G099363 Dcun1d3 Rattus norvegicus 309035

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Dcun1d3 RAID00150808 rno-miR-20b-5p miRNA MIMAT0003211 Dcun1d3 mRNA 309035 Prediction 0.2381 Dcun1d3 RAID00189844 rno-miR-214-3p miRNA MIMAT0000885 Dcun1d3 mRNA 309035 Prediction 0.2202 Dcun1d3 RAID00444955 rno-miR-125a-3p miRNA MIMAT0004729 Dcun1d3 mRNA 309035 Prediction 0.1828 Dcun1d3 RAID00656524 rno-miR-381-3p miRNA MIMAT0003199 Dcun1d3 mRNA 309035 Prediction 0.2381 Dcun1d3 RAID00697562 rno-miR-144-3p miRNA MIMAT0000850 Dcun1d3 mRNA 309035 Prediction 0.1828 Dcun1d3 RAID00815999 rno-miR-20a-5p miRNA MIMAT0000602 Dcun1d3 mRNA 309035 Prediction 0.2381 Dcun1d3 RAID00937209 rno-miR-3566 miRNA MIMAT0017841 Dcun1d3 mRNA 309035 Prediction 0.1828 Dcun1d3 RAID01079957 rno-miR-322-3p miRNA MIMAT0000547 Dcun1d3 mRNA 309035 Prediction 0.1828 Dcun1d3 RAID01116091 rno-miR-539-3p miRNA MIMAT0017212 Dcun1d3 mRNA 309035 Prediction 0.1828 Dcun1d3 RAID01184179 rno-miR-433-3p miRNA MIMAT0001628 Dcun1d3 mRNA 309035 Prediction 0.1828 Dcun1d3 RAID01348165 rno-miR-24-3p miRNA MIMAT0000794 Dcun1d3 mRNA 309035 Prediction 0.1828 Dcun1d3 RAID01367105 rno-miR-15b-5p miRNA MIMAT0000784 Dcun1d3 mRNA 309035 Prediction 0.1828 Dcun1d3 RAID01384797 rno-miR-3552 miRNA MIMAT0017813 Dcun1d3 mRNA 309035 Prediction 0.1828 Dcun1d3 RAID01622237 rno-miR-124-3p miRNA MIMAT0000828 Dcun1d3 mRNA 309035 Prediction 0.1828 Dcun1d3 RAID01900152 rno-miR-93-5p miRNA MIMAT0000817 Dcun1d3 mRNA 309035 Prediction 0.2381 Dcun1d3 RAID01995453 rno-miR-761 miRNA MIMAT0012853 Dcun1d3 mRNA 309035 Prediction 0.1828 Dcun1d3 RAID02049620 rno-miR-291a-3p miRNA MIMAT0000895 Dcun1d3 mRNA 309035 Prediction 0.2202 Dcun1d3 RAID02080058 rno-miR-126b miRNA MIMAT0017843 Dcun1d3 mRNA 309035 Prediction 0.1828 Dcun1d3 RAID02128264 rno-miR-107-3p miRNA MIMAT0000826 Dcun1d3 mRNA 309035 Prediction 0.1828 Dcun1d3 RAID02233957 rno-miR-471-3p miRNA MIMAT0017310 Dcun1d3 mRNA 309035 Prediction 0.1828 Dcun1d3 RAID02313444 rno-miR-291b miRNA MIMAT0017822 Dcun1d3 mRNA 309035 Prediction 0.1828 Dcun1d3 RAID02608183 rno-miR-106b-5p miRNA MIMAT0000825 Dcun1d3 mRNA 309035 Prediction 0.2381 Dcun1d3 RAID02739167 rno-miR-17-5p miRNA MIMAT0000786 Dcun1d3 mRNA 309035 Prediction 0.2381 Dcun1d3 RAID02815947 rno-miR-539-5p miRNA MIMAT0003176 Dcun1d3 mRNA 309035 Prediction 0.1828 Dcun1d3 RAID03019341 rno-miR-666-3p miRNA MIMAT0017371 Dcun1d3 mRNA 309035 Prediction 0.1828 Dcun1d3 RAID03039866 rno-miR-338-3p miRNA MIMAT0000581 Dcun1d3 mRNA 309035 Prediction 0.1828 Dcun1d3 RAID03315269 rno-miR-488-3p miRNA MIMAT0005341 Dcun1d3 mRNA 309035 Prediction 0.1828 Dcun1d3 RAID03342025 rno-miR-18a-5p miRNA MIMAT0000787 Dcun1d3 mRNA 309035 Prediction 0.1828 Dcun1d3 RAID03347117 rno-miR-186-5p miRNA MIMAT0000863 Dcun1d3 mRNA 309035 Prediction 0.1828 Dcun1d3 RAID03471732 rno-miR-185-5p miRNA MIMAT0000862 Dcun1d3 mRNA 309035 Prediction 0.1828 Dcun1d3 RAID03514672 rno-miR-129-2-3p miRNA MIMAT0000601 Dcun1d3 mRNA 309035 Prediction 0.1828 Dcun1d3 RAID03526511 rno-miR-129-1-3p miRNA MIMAT0017120 Dcun1d3 mRNA 309035 Prediction 0.1828 Dcun1d3 RAID03546404 rno-miR-3590-5p miRNA MIMAT0017889 Dcun1d3 mRNA 309035 Prediction 0.1828 Dcun1d3 RAID03567942 rno-miR-411-5p miRNA MIMAT0005312 Dcun1d3 mRNA 309035 Prediction 0.1828 Dcun1d3 RAID03739642 rno-miR-103-3p miRNA MIMAT0000824 Dcun1d3 mRNA 309035 Prediction 0.1828 Dcun1d3 RAID03927745 rno-miR-127-3p miRNA MIMAT0000833 Dcun1d3 mRNA 309035 Prediction 0.1828