DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Ddb2; rCG_26646 rno-let-7i 12 36 -UGUCG-UGU---UUGAUGAUGGAGU ||||| ||| :|| ||:||| GACAGCAACACCUGACC-CUGCCUA- Ddb2; rCG_26646 rno-miR-100 93 118 GUGU---UCAAGCCUAGAUGCCCAA || ||| :||: || |||| AACUCUCAGUGUGGGAGUAGGGGUG Ddb2; rCG_26646 rno-miR-125a 74 110 -GUGUCCAA-UUUCCC------AGAGU----CCCU- |||||| :||| ||||| |||| UCACAGGCCAGAAGUACCCAACUCUCAGUGUGGGAG Ddb2; rCG_26646 rno-miR-127 201 220 -UCGGUUCGAGUCUGCCUAGGCU |||:| |||| ||:||| CAGCUACCCUCA---GGGUCCC- Ddb2; rCG_26646 rno-miR-133a 98 120 UGUCG-ACCAACUUCCCCUGGUU |||: ||| | ||||| | UCAGUGUGGGAGUAGGGGUGCU- Ddb2; rCG_26646 rno-miR-133b 99 120 AUCG-ACCAACUUCCCCUGGUU ||: ||| | ||||| | CAGUGUGGGAGUAGGGGUGCU- Ddb2; rCG_26646 rno-miR-144 117 140 -GAUCA-UGUAGUAGAUAUGACAU- ||:|| :||| : |||||||| GCUGGUGGCAUGGG--AUACUGUAU Ddb2; rCG_26646 rno-miR-145 110 152 UUCCCUAAGG-------ACCCU---------UUUGA-CCUG ||||:| |: ||||| :|||| |||: UAGGGGUGCUGGUGGCAUGGGAUACUGUAUGGAACUAGGAUA Ddb2; rCG_26646 rno-miR-146 30 51 UUGGGUACCUUAAGUCAAGAGU :||:||||:| :||||| UGCCUAUGGGAGCAGGUUCUG- Ddb2; rCG_26646 rno-miR-151 207 233 -GGAGUUCCUCGGA-GU--CAGAUCA |||||:|| ||| | |||||| CCCUCAGGGUCCCUGCUGUGUCUAGC Ddb2; rCG_26646 rno-miR-192 64 86 CCGACAGUUAAGUAUCCAGUC- |||||: :|||| ||| ||| AGCUGUUUGUUCACAGGCCAGA Ddb2; rCG_26646 rno-miR-193 59 86 GACCC-UGA--AACA----UCCGGUCAA ||| :|| |||| ||||||| GUGGUAGCUGUUUGUUCACAGGCCAGA- Ddb2; rCG_26646 rno-miR-196a 13 37 GGUUGUUGU--ACUUUGAUGGAU- ||:||||| ||| ||:|||| ACAGCAACACCUGACCCUGCCUAU Ddb2; rCG_26646 rno-miR-196b 13 37 GGUUGUUGUC--CUUUGAUGGAU- ||:||||| || ||:|||| ACAGCAACACCUGACCCUGCCUAU Ddb2; rCG_26646 rno-miR-214 218 240 -GACGG-ACAGACACGGACGACA ||||: ||||| ||||| | CCUGCUGUGUCUA-GCCUGGAGA Ddb2; rCG_26646 rno-miR-22 40 69 -UGU-CAAGAAG-----UUGACCGUCGAA :|| ||||| || |||:|||| AGCAGGUUCUGUGAGAGAAGUGGUAGCUG Ddb2; rCG_26646 rno-miR-24 221 261 -GACAA-----GGACGACU----------UGA-CUCGGU- |||| |||| || :|| |||||| GCUGUGUCUAGCCUGGAGACCAAGUUCAUGCUAGAGCCAA Ddb2; rCG_26646 rno-miR-27a 37 56 CGCCUUGAAUCGGUGACACUU- |||:| :|:: ||||||: -GGGAGCA-GGUU-CUGUGAGA Ddb2; rCG_26646 rno-miR-27b 37 56 CGUCUUGAAUCGGUGACACUU- :||:| :|:: ||||||: -GGGAGCA-GGUU-CUGUGAGA Ddb2; rCG_26646 rno-miR-292-5p 81 112 -GUUUUCUC-----GGGGGUCAAA--CUCA- ||:||| |:|:|||| |||| CCAGAAGUACCCAACUCUCAGUGUGGGAGUA Ddb2; rCG_26646 rno-miR-296 98 121 UGUC-CUAACUCCCCCCCGGGA- ||| | ||| ||||: || UCAGUGUGGGAGUAGGGGUGCUG Ddb2; rCG_26646 rno-miR-298 4 35 -CCU--UCUUGUCG----GGA--GGAGACGG- || :|:||||| ||| || ||||| UGGUGUGGGACAGCAACACCUGACC-CUGCCU Ddb2; rCG_26646 rno-miR-299 2 25 -UACAUACACCCUGCCAUU-UGGU ||| :|||||||| | || ||| GAUG-GUGUGGGACAGCAACACCU Ddb2; rCG_26646 rno-miR-29a 100 122 -UUGGCUAAAGUCUACCACGAU- : :|: :||: ||||||: AGUGUGGGAGUAGG-GGUGCUGG Ddb2; rCG_26646 rno-miR-29c 103 122 UGGCUAAAGUUUACCACGAU- :|: :|:: ||||||: -GUGGGAGUAGG-GGUGCUGG Ddb2; rCG_26646 rno-miR-31 200 236 -GUCGAU-------------ACGGUCGUAGAACGGA- |||||| |||: |::||| |||| CCAGCUACCCUCAGGGUCCCUGCU-GUGUCUAGCCUG Ddb2; rCG_26646 rno-miR-324-5p 18 44 -UGUGGUUAC-GGGAUC----CCCUACGC ||||| || ||||: |||| || AACACC--UGACCCUGCCUAUGGGA-GCA Ddb2; rCG_26646 rno-miR-327 205 222 -UGGGAGUA-CGGGGAGUUCC ||||||| |:|||| UACCCUCAGGGUCCCUG---- Ddb2; rCG_26646 rno-miR-331 101 127 AAGAUCCUA---UCCGGGUCC-CCG- | |:||| :||: | || ||| GUGUGGGAGUAGGGGUGCUGGUGGCA Ddb2; rCG_26646 rno-miR-335 157 174 UGUAAAAAGCAAUAACGAGAACU- :|||| |||||| || -------AUGUUACUGCUCUAGAU Ddb2; rCG_26646 rno-miR-336 99 119 -UCUGAUCUAUACCUUCCCACU || |:|: :| |:||||| CAGUGUGGGAGU--AGGGGUGC Ddb2; rCG_26646 rno-miR-338 102 123 AGUUGUUUUAGUGACUACGACCU : ::|:| |:|||||| -UGUGGGAGUAGG-GGUGCUGGU Ddb2; rCG_26646 rno-miR-339 111 133 ACUCGAGGACCUCCUGU-CCCU- |:| | |||| || || |||| AGGGGUGCUGGUGG-CAUGGGAU Ddb2; rCG_26646 rno-miR-342 34 59 CUGCCCACGCUAAAGACACACUCU- |:||| || ||||||| |||| UAUGGGAGCAGGUUCUGUGAGAGAA Ddb2; rCG_26646 rno-miR-34a 197 225 UUGUUGGUCGAU------UCU-GUGACGGU ||||||||| :|: | ||||: --AAACCAGCUACCCUCAGGGUCCCUGCUG Ddb2; rCG_26646 rno-miR-352 149 171 -AUGAUACGUUGGAUGAUGAGA- ||||: || :||||:|||| AUACUGA-CAUGUUACUGCUCUA Ddb2; rCG_26646 rno-miR-370 20 48 UUGGUCCAAGGUGGGG-----UCGUCCG- ||| | || ||: ||||||: CACCUGAC-CCUGCCUAUGGGAGCAGGUU Ddb2; rCG_26646 rno-miR-377 80 108 -GGUUUUCAACGGAAA-----CACACUA |||:|||| || |||||: GCCAGAAGUACCCAACUCUCAGUGUGGG Ddb2; rCG_26646 rno-miR-422b 230 250 -CGGAAGACUGAGGUUCAGGUCA |||| || ||||||:|| AGCCUG--GAGACCAAGUUCAU- Ddb2; rCG_26646 rno-miR-449 198 230 -UGGUCGAUU---GUU------AUGUGACGGU |||||||| ||: |:| ||:| AACCAGCUACCCUCAGGGUCCCUGCUGUGUCU Ddb2; rCG_26646 rno-miR-483 98 126 UGUU-CUGCC-C-UCCCCUCC-UCACU- ||: | || | ||||| | :|||: UCAGUGUGGGAGUAGGGGUGCUGGUGGC Ddb2; rCG_26646 rno-miR-497 75 122 AUGUUUGGU---------------GUCACA---------CGACGAC |||::||| |||||| | ||||| CACAGGCCAGAAGUACCCAACUCUCAGUGUGGGAGUAGGGGUGCUGG Ddb2; rCG_26646 rno-miR-541 198 222 ACACUGGUUGU----AGUCUUAGGGAA ||||:| |||| ||||| ---AACCAGCUACCCUCAGGGUCCCUG Ddb2; rCG_26646 rno-miR-9 281 307 AGUAUGUCGA--UCU-AUUGGUUUCU- :||:||: ||| ||||||::|| -UGUAUAGUAGCAGAAUAACCAGGGAA Ddb2; rCG_26646 rno-miR-96 107 128 -UCGUUUUUACACGAUCACGGUUU ||:|:: |||||:||| || GAGUAGGG--GUGCUGGUGGCAU- Ddb2; rCG_26646 rno-miR-99a 98 118 GUGUUCUAGCCUAGAUGCCCAA ||: :| ||| || |||| -UCAGUGUGGGAG-UAGGGGUG Ddb2; rCG_26646 rno-miR-99b 108 132 GCGUUCCA---GCCAAGAUGCCCAC |:|:|| :||| |:||| AGUAGGGGUGCUGGUGGCAUGGGA- Ddb2; rCG_26646 rno-let-7i 13 36 UGUCGUGUUUGAU---GAUGGAgu |||||| | ||: ||:||| ACAGCAACACCTGACCCTGCCTat Ddb2; rCG_26646 rno-miR-100 97 117 GUGUUCAAGCCUAGAUGCCCAa | | ||| :||: || |||| CTC-AGTGTGGGAGTAGGGGTg Ddb2; rCG_26646 rno-miR-125a 179 216 guGUC---CAAUUUCCCA------------GAGUCCCu ||| |||||| || ||||||| ttCAGAAAATTAAAGAGTAAACCAGCTACCCTCAGGGt Ddb2; rCG_26646 rno-miR-125a 75 104 GUGUCCAAUUUCC-------CAGAGUCCCu |||||| |:| | |||||| | CACAGGCCAGAAGTACCCAACTCTCAGTGt Ddb2; rCG_26646 rno-miR-125b 197 216 agUGUUCAAUCCCAGAGUCCCu || || || ||||||| aaACCAGCTA--CCCTCAGGGt Ddb2; rCG_26646 rno-miR-127 202 220 UCGGUUCGAGUCUGCCUAGGcu |||:| |||| ||:||| AGCTACCCTCA---GGGTCCct Ddb2; rCG_26646 rno-miR-133a 114 135 uguCGACCAACUUCCCCUgguu |||||| | | |||| ggtGCTGGTGGCATGGGAtact Ddb2; rCG_26646 rno-miR-133b 115 135 auCGACCAACUUCCCCUgguu |||||| | | |||| gtGCTGGTGGCATGGGAtact Ddb2; rCG_26646 rno-miR-144 118 138 GAUCA-UGUAGUAGAUAUGACAU ||:|| :||| : |||||||| CTGGTGGCATGG--GATACTGTA Ddb2; rCG_26646 rno-miR-145 126 150 UUCCCUAAGGAC---CCUUUUGA-CCUg | |||| | ||| || |||| ||| ATGGGA-TACTGTATGG--AACTAGGAt Ddb2; rCG_26646 rno-miR-146 30 51 uuGGGUACCUUAAGUCAAGAgu ||:||||:| :||||| tgCCTATGGGAGCAGGTTCTgt Ddb2; rCG_26646 rno-miR-151 208 232 GGAGUUCCUCGGA-G--UCAGAUCa |||||:|| ||| | |||||| CCTCAGGGTCCCTGCTGTGTCTAGc Ddb2; rCG_26646 rno-miR-193 59 86 gACCCU-G--AAACA----UCCGGUCaa ||| | | ||||| ||||||| gTGGTAGCTGTTTGTTCACAGGCCAGaa Ddb2; rCG_26646 rno-miR-214 204 225 GACGGACAGACAC--GGACGACA || || || | | |||||||| CTACC-CTCAGGGTCCCTGCTGT Ddb2; rCG_26646 rno-miR-22 41 68 uGU-CAAGAAG-----UUGACCGUCGAa || ||||| : || |||:|||| gCAGGTTCTGTGAGAGAAGTGGTAGCTg Ddb2; rCG_26646 rno-miR-24 242 259 gaCAAGGACGACUUGA-CUCGGU |||| || || |||||| aaGTTCATG-----CTAGAGCCA Ddb2; rCG_26646 rno-miR-24 213 234 gaCAAGGACGAC-UUGACUCGGu || ||||||| : || |||| ggGTCCCTGCTGTGTCT-AGCCt Ddb2; rCG_26646 rno-miR-27a 36 54 cgCCUUGAAUCGGUGACACUu |||:| || : |||||| tgGGAGC--AGGTTCTGTGAg Ddb2; rCG_26646 rno-miR-27b 36 54 cguCUUGAAUCGGUGACACUu ||:| || : |||||| tggGAGC--AGGTTCTGTGAg Ddb2; rCG_26646 rno-miR-292-5p 82 108 GUUUUC-----UCGGGGGUCAAACUCa ||:||| | |:|:|||| ||:| CAGAAGTACCCAACTCTCAGTGTGGGa Ddb2; rCG_26646 rno-miR-298 10 33 CCUUCUUGUCG-GGA--GGAGACGG ||:| |:|| | ||| || ||||| GGGACAGCAACACCTGACC-CTGCC Ddb2; rCG_26646 rno-miR-299 3 24 UACAUACACCCUGCCAUU-UGGu ||| :|||||||| | || ||| ATG-GTGTGGGACAGCAACACCt Ddb2; rCG_26646 rno-miR-29c 101 120 uggcuaaaguuuaCCACGAu |||||| gtgtgggagtaggGGTGCTg Ddb2; rCG_26646 rno-miR-31 211 234 GUC---GAUACGGUCGUAGAACGGA ||| | |||: |::||| |||| CAGGGTCCCTGCT-GTGTCTAGCCT Ddb2; rCG_26646 rno-miR-324-5p 19 43 UGUGG-UUACG--GGAUCCCCUACGc ||||| :| | |||| |||| || ACACCTGACCCTGCCTATGGGA-GCa Ddb2; rCG_26646 rno-miR-327 196 215 ugggaGUACG--GGGAGUUCC || || ||||||:|| taaacCA-GCTACCCTCAGGG Ddb2; rCG_26646 rno-miR-331 95 116 aAGA-UCCUAUCCGGGUCCCCg ||| || :|:|| :||||| cTCTCAGTGTGGGAGTAGGGGt Ddb2; rCG_26646 rno-miR-335 155 172 UGUAAAAAGCAAUAACGAGAACU |||| |||| |||||| || ACAT-----GTTACTGCTCTAGA Ddb2; rCG_26646 rno-miR-336 94 118 ucuGAUCUAUACC----UUCCCACu || :|:||| |:||||| actCTCAGTGTGGGAGTAGGGGTGc Ddb2; rCG_26646 rno-miR-338 98 122 AGU--UGUUUUAGUGACUACGACCu ||| :::::| :| |:|||||| TCAGTGTGGGAGTAGGGGTGCTGGt Ddb2; rCG_26646 rno-miR-34a 195 224 uugUUGGUCGAU-----UCU--GUGACGgu ||||||||| ||: | |||| gtaAACCAGCTACCCTCAGGGTCCCTGCtg Ddb2; rCG_26646 rno-miR-351 191 216 gUCCGAGUUUCCCGA--GGAGUCCCu || | || ||| |||||||| aAGAGTAAACCAGCTACCCTCAGGGt Ddb2; rCG_26646 rno-miR-352 150 169 AUGAUACGUUGGAUGAUGAGA ||||: || :||||:|||| TACTG-ACATGTTACTGCTCT Ddb2; rCG_26646 rno-miR-377 81 109 GGUUUUCAACG---GA-A---ACACACUa |||:|||| | || | |||| || CCAGAAGTACCCAACTCTCAGTGTGGGAg Ddb2; rCG_26646 rno-miR-422b 231 250 CGGAAGACUGAGGUUCAGGUca |||| || ||||||:|| GCCT--GGAGACCAAGTTCAtg Ddb2; rCG_26646 rno-miR-449 199 224 UGGUCGAU---UGUUAU-GUGACGgu |||||||| ||: : | |||| ACCAGCTACCCTCAGGGTCCCTGCtg Ddb2; rCG_26646 rno-miR-497 90 123 auGUUUGGUGUCA------------CACGACGAC ||| :| |||| |||||| || ccCAACTCTCAGTGTGGGAGTAGGGGTGCTGGTG Ddb2; rCG_26646 rno-miR-541 199 221 acacuGGUUGUAGUCUUAGGGAa |:| | ||||::||||| accagCTACCCTCAGGGTCCCTg Ddb2; rCG_26646 rno-miR-9 282 305 agUAU-GUCGAUCUAUUGGUUUCU ||| :||| : |||||||::|| gtATAGTAGCAGAATAACCAGGGA Ddb2; rCG_26646 rno-miR-96 108 128 UCGUUUUUACACGAUCACGGUuu ||:|::: |||||:||| || AGTAGGG--GTGCTGGTGGCAtg Ddb2; rCG_26646 rno-miR-99a 97 117 GUGUUCUAGCCUAGAUGCCCAa | ||: :| ||| || |||| CTCAGTGTGGGA-GTAGGGGTg Ddb2; rCG_26646 rno-miR-99b 97 117 GCGUUCCAGCCAAGAUGCCCAC | ||: || || || ||||| CTCAGTGT-GGGAGTAGGGGTG Ddb2; rCG_26646 rno-miR-125a 209 216 GU-----GUCC---AAUUUCCCA------------GAGUCCCU ||| |||||| || ||||||| UUUGCUUCAGAAAAUUAAAGAGUAAACCAGCUACCCUCAGGGU Ddb2; rCG_26646 rno-miR-125b 209 216 AGUGUUCAAUCCCA---------------------GAGUCCCU ||||||| UUUGCUUCAGAAAAUUAAAGAGUAAACCAGCUACCCUCAGGGU Ddb2; rCG_26646 rno-miR-144 131 138 ----------------------GAUCAU-GUAGUAGAUAUGACAU ||:||: ||| : |||||||| UCUCAGUGUGGGAGUAGGGGUGCUGGUGGCAUGGG--AUACUGUAU Ddb2; rCG_26646 rno-miR-214 218 225 GAC----------------------GGACAGACACGGACGACA ||| || |||||||| GAAAAUUAAAGAGUAAACCAGCUACCCUCAGGGUCCCUGCUGUG Ddb2; rCG_26646 rno-miR-351 209 216 -------GUCCG--AGUUUC-C-------CGA--GGAGUCCCU ||| |:|||| | ||| |||||||| UUUGCUUCAGAAAAUUAAAGAGUAAACCAGCUACCCUCAGGGU

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Ddb2 RAID00275738 rno-miR-3596a miRNA MIMAT0017886 Ddb2 mRNA 100362121 Prediction 0.1828 Ddb2 RAID01081310 rno-miR-802-5p miRNA MIMAT0012840 Ddb2 mRNA 100362121 Prediction 0.1828 Ddb2 RAID01588272 rno-miR-532-3p miRNA MIMAT0005323 Ddb2 mRNA 100362121 Prediction 0.1828 Ddb2 RAID03140064 rno-miR-3099 miRNA MIMAT0025048 Ddb2 mRNA 100362121 Prediction 0.1828