DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000568 rno-miR-330* 361370 Tom1 agagacguccGGGACACGAAACg :||| ||||||| cuuuccccuaUCCU-UGCUUUGu 2 14 565 586 [rn4:19:13925268-13925289:+] 0.5696 147 7 -14.97 -0.4115 MIMAT0000577 rno-miR-337 361370 Tom1 uuuCCGUAGUAUAUCCUCGACUu || : | | | ||||||| ccuGGGGCCCCAGACGAGCUGAc 2 21 210 232 [rn4:19:13924913-13924935:+] 0.5696 148 7 -17.56 -0.1450 MIMAT0004654 rno-miR-344-5p 361370 Tom1 ggaccuuAGAUCGGUCCUCGGACu ||| ||| ||||||| cuucucuUCU-CCCA-GAGCCUGg 2 18 88 109 [rn4:19:13924791-13924812:+] 0.5696 149 7 -21.48 -0.1284 MIMAT0004654 rno-miR-344-5p 361370 Tom1 ggaccuuagaUCGGUCCUCGGACu || |||||||| aucccccugcAGAGUGGAGCCUGa 2 15 378 401 [rn4:19:13925081-13925104:+] 0.5696 146 7 -24.29 -0.3821 MIMAT0000599 rno-miR-349 361370 Tom1 ucucCAAUUCUGUCG-UCCCGAc ||| |||| |||||| cuuuGUUCCUCCAGCAAGGGCUc 2 19 581 603 [rn4:19:13925284-13925306:+] 0.5696 122 6 -16.63 -0.1426 MIMAT0000614 rno-miR-151* 361370 Tom1 ggaguuccucggaGUCAGAUc ||||||| gaaucuacacuacCAGUCUAg 2 9 320 340 [rn4:19:13925023-13925043:+] 0.5696 140 7 -15.52 -0.2109 MIMAT0004719 rno-miR-30c-1* 361370 Tom1 ccucauuuguuGGGAGAGGGUc :|:||||||| uaccccgcuucUCUUCUCCCAg 2 12 81 102 [rn4:19:13924784-13924805:+] 0.5696 147 7 -20.63 -0.5803 MIMAT0005442 rno-miR-30c-2* 361370 Tom1 ucucauuugucGGAAGAGGGUc :||||||||| uaccccgcuucUCUUCUCCCAg 2 12 81 102 [rn4:19:13924784-13924805:+] 0.5696 151 7 -21.11 -0.5803 MIMAT0000813 rno-miR-34b 361370 Tom1 guuaGUCGAUUAAUGUGACGGAu |||:| | |||||||| ccccCAGUU-CCUCCACUGCCUu 2 20 546 567 [rn4:19:13925249-13925270:+] 0.5696 153 7 -19.20 -0.3201 MIMAT0004726 rno-miR-101a* 361370 Tom1 cguaGUCGUGACACUA-UUGACu ||||| || ||| ||||| ugggCAGCAGUGGGAUGAACUGa 2 19 107 129 [rn4:19:13924810-13924832:+] 0.5696 138 0 -21.50 -0.3380 MIMAT0004739 rno-miR-204* 361370 Tom1 uugcAGGGAA--ACGGAA-GGGUCg |||| | | |||| ||||| gaauUCCCCUGCUCCCUUCCCCAGa 2 19 274 298 [rn4:19:13924977-13925001:+] 0.5696 125 0 -22.73 -0.3841 MIMAT0004739 rno-miR-204* 361370 Tom1 uugcaGGGAAACGGA-AGGGUCg | ||| |:| |||||| uacccCGCUUCUCUUCUCCCAGa 2 18 81 103 [rn4:19:13924784-13924806:+] 0.5696 121 6 -18.51 -0.6840 MIMAT0000894 rno-miR-291a-5p 361370 Tom1 ucucuCCCGGAGGUGA-AACUAc ||| ||| || ||||| caccuGGGGCUCAUCUGUUGAUu 2 18 608 630 [rn4:19:13925311-13925333:+] 0.5696 125 0 -15.03 -0.1085 MIMAT0000898 rno-miR-296* 361370 Tom1 uguccUAACUC--CCCCCCGGGa | |||| ||||||| acuuuACUGAGACCUGGGGCCCc 2 17 198 220 [rn4:19:13924901-13924923:+] 0.5696 143 7 -20.06 -0.3461 MIMAT0003124 rno-miR-412 361370 Tom1 ugccGAUCACCUGGUCCAC-UUCa ||| | |||| |||| ||| cgacCUAAUUGACCUGGUGUAAGg 2 20 239 262 [rn4:19:13924942-13924965:+] 0.5696 135 0 -17.73 -0.1497 MIMAT0003197 rno-miR-376a* 361370 Tom1 gaguaucuuccUCUUAGAUGg ||||||||| aggagcccuucAGAAUCUACa 2 11 308 328 [rn4:19:13925011-13925031:+] 0.5696 150 7 -15.01 -0.5122 MIMAT0003209 rno-miR-363* 361370 Tom1 uuuaaCGUAGCACUAGGUGGGc ||| | | ||||||| cuccaGCA-AGGGCUCCACCCa 2 18 589 609 [rn4:19:13925292-13925312:+] 0.5696 147 7 -16.73 -0.2279 MIMAT0005279 rno-miR-466c 361370 Tom1 guacAUGUACGUGUGUAGUGu || | | | ||||||| gcauUAGA-GAAGACAUCACc 2 18 341 360 [rn4:19:13925044-13925063:+] 0.5696 147 7 -11.87 -0.2855 MIMAT0005319 rno-miR-484 361370 Tom1 uagcccucccCUGA-CUCGGACu || | ||||||| ucccccugcaGAGUGGAGCCUGa 2 13 379 401 [rn4:19:13925082-13925104:+] 0.5696 143 7 -16.99 -0.3791 MIMAT0005319 rno-miR-484 361370 Tom1 uagcccuccccuGACUCGGACu | ||||||| cuucucuucuccCAGAGCCUGg 2 11 88 109 [rn4:19:13924791-13924812:+] 0.5696 142 7 -14.86 -0.1469 MIMAT0005337 rno-miR-760-3p 361370 Tom1 aggggugucuGGGUCUCGGc ||||||||| cuucucuucuCCCAGAGCCu 2 11 88 107 [rn4:19:13924791-13924810:+] 0.5696 150 7 -22.91 -0.1380 MIMAT0005337 rno-miR-760-3p 361370 Tom1 agGGGUGUCU---GG-GU-CUCGGc |||| ||| || || ||||| ucCCCAGAGAAGCCCACAGGAGCCc 2 19 291 315 [rn4:19:13924994-13925018:+] 0.5696 120 0 -28.12 -0.4056 MIMAT0012827 rno-miR-1224 361370 Tom1 gagguggaggggUCAGGAGUg |||||||| uguugauugaugAGUCCUCAg 2 10 623 643 [rn4:19:13925326-13925346:+] 0.5696 145 7 -15.55 -0.1697 MIMAT0012839 rno-miR-668 361370 Tom1 ccauCACCCGGCUCGGCUC-ACUGu | || || || |||| |||| accuGGGGCCCCAGACGAGCUGACc 2 21 209 233 [rn4:19:13924912-13924936:+] 0.5696 132 0 -23.14 -0.2179 MIMAT0012846 rno-miR-201 361370 Tom1 uucUUGUUAC-GGAAUGACUCa :|| ||| |:|||||||| accGACUAUGACUUUACUGAGa 2 19 188 209 [rn4:19:13924891-13924912:+] 0.5696 165 7 -17.82 -0.7671 MIMAT0012853 rno-miR-761 361370 Tom1 acacaGUCAAAGUGGGACGACg ::|| | |||||||| ggcaaUGGUGGC-CCCUGCUGa 2 18 429 449 [rn4:19:13925132-13925152:+] 0.5696 147 7 -20.37 -0.1508 MIMAT0000560 rno-miR-326 361370 Tom1 ugaccuccuucccGGGUCUCc ||||||| ccgcuucucuucuCCCAGAGc 2 9 85 105 [rn4:19:13924788-13924808:+] 0.5696 140 7 -13.30 -0.2140 MIMAT0000560 rno-miR-326 361370 Tom1 ugaccuccuucccGGGUCUCc ||||||| cccugcucccuucCCCAGAGa 2 9 280 300 [rn4:19:13924983-13925003:+] 0.5696 140 7 -14.41 -0.2565 MIMAT0004641 rno-miR-330 361370 Tom1 cggauucuguguccGGGUCUCu ||||||| cccgcuucucuucuCCCAGAGc 2 9 84 105 [rn4:19:13924787-13924808:+] 0.5696 140 7 -16.94 -0.2081 MIMAT0004641 rno-miR-330 361370 Tom1 cggauucuguguccGGGUCUCu ||||||| ccccugcucccuucCCCAGAGa 2 9 279 300 [rn4:19:13924982-13925003:+] 0.5696 140 7 -19.74 -0.2542 MIMAT0000814 rno-miR-34c 361370 Tom1 cguuaGUCGAUUGAUGUGACGGa |||:| || ||||||| gccccCAGUU-CCUCCACUGCCu 2 19 545 566 [rn4:19:13925248-13925269:+] 0.5696 156 7 -21.02 -0.4938 MIMAT0000814 rno-miR-34c 361370 Tom1 cgUUAGUCGAU--UGAUGUGACGGa |:| || | || ||||||| ccAGUGAGGAAAGACCUCACUGCCc 2 22 480 504 [rn4:19:13925183-13925207:+] 0.5696 148 7 -21.48 -0.3928 MIMAT0000815 rno-miR-34a 361370 Tom1 uguuGGUCGAUUCUGUGACGGu ||||:| ||||||| gcccCCAGUUCCUCCACUGCCu 2 19 545 566 [rn4:19:13925248-13925269:+] 0.5696 154 7 -20.90 -0.4870 MIMAT0000815 rno-miR-34a 361370 Tom1 ugUUGGUCGAUUCU---GUGACGGu |:: || |||| ||||||| ccAGUGAGGAAAGACCUCACUGCCc 2 21 480 504 [rn4:19:13925183-13925207:+] 0.5696 151 7 -19.81 -0.3928 MIMAT0000828 rno-miR-124 361370 Tom1 ccguaaguggcgCACGGAAu ||||||| guacagggagagGUGCCUUu 2 9 644 663 [rn4:19:13925347-13925366:+] 0.5696 140 7 -12.82 -0.4581 MIMAT0000848 rno-miR-142-3p 361370 Tom1 agguauuucauccuuUGUGAUGu ||||||| agcccuucagaaucuACACUACc 2 9 311 333 [rn4:19:13925014-13925036:+] 0.5696 140 7 -11.17 -0.7017 MIMAT0000885 rno-miR-214 361370 Tom1 gacggACAGACACGGACGACa || : | ||||||| ggcaaUGGUGGCCCCUGCUGa 2 17 429 449 [rn4:19:13925132-13925152:+] 0.5696 144 7 -16.87 -0.1523 MIMAT0004742 rno-miR-296 361370 Tom1 ccuCUCGGAGGUGGGUUGGGAg ||| | | :||||||| acuGAGGAACAAGUCAACCCUc 2 20 125 146 [rn4:19:13924828-13924849:+] 0.5696 151 7 -21.96 -0.1190 MIMAT0001543 rno-miR-449a 361370 Tom1 uggUCGAUUGUUAUGUGACGGu || || | ||||||| gugAGGAAAGACCUCACUGCCc 2 20 483 504 [rn4:19:13925186-13925207:+] 0.5696 147 7 -13.40 -0.3897 MIMAT0001543 rno-miR-449a 361370 Tom1 ugGUCGAUUGUUAUGUGACGGu |||:| | | ||||||| ccCAGUU--C-CUCCACUGCCu 2 21 548 566 [rn4:19:13925251-13925269:+] 0.5696 143 7 -19.16 -0.4973

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G094332 Tom1 Rattus norvegicus 361370

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Tom1 RAID00056656 rno-miR-484 miRNA MIMAT0005319 Tom1 mRNA 361370 Prediction 0.1828 Tom1 RAID01247849 rno-miR-874-5p miRNA MIMAT0017290 Tom1 mRNA 361370 Prediction 0.1828 Tom1 RAID01349895 rno-miR-326-3p miRNA MIMAT0000560 Tom1 mRNA 361370 Prediction 0.2202 Tom1 RAID01462610 rno-miR-760-3p miRNA MIMAT0005337 Tom1 mRNA 361370 Prediction 0.1828 Tom1 RAID01508552 rno-miR-142-3p miRNA MIMAT0000848 Tom1 mRNA 361370 Prediction 0.1828 Tom1 RAID01643497 rno-miR-330-5p miRNA MIMAT0004641 Tom1 mRNA 361370 Prediction 0.2202 Tom1 RAID01659130 rno-miR-449c-5p miRNA MIMAT0017803 Tom1 mRNA 361370 Prediction 0.1828 Tom1 RAID01686008 rno-miR-34b-5p miRNA MIMAT0000813 Tom1 mRNA 361370 Prediction 0.1828 Tom1 RAID01697097 rno-miR-450b-3p miRNA MIMAT0035747 Tom1 mRNA 361370 Prediction 0.1828 Tom1 RAID01747577 rno-miR-214-3p miRNA MIMAT0000885 Tom1 mRNA 361370 Prediction 0.1828 Tom1 RAID01829722 rno-miR-34a-5p miRNA MIMAT0000815 Tom1 mRNA 361370 Prediction 0.2202 Tom1 RAID01946695 rno-miR-296-5p miRNA MIMAT0000898 Tom1 mRNA 361370 Prediction 0.1828 Tom1 RAID02062425 rno-miR-34c-5p miRNA MIMAT0000814 Tom1 mRNA 361370 Prediction 0.2202 Tom1 RAID02175216 rno-miR-6334 miRNA MIMAT0025075 Tom1 mRNA 361370 Prediction 0.1828 Tom1 RAID02647851 rno-miR-124-3p miRNA MIMAT0000828 Tom1 mRNA 361370 Prediction 0.2202 Tom1 RAID02728317 rno-miR-361-3p miRNA MIMAT0017199 Tom1 mRNA 361370 Prediction 0.1828 Tom1 RAID02840074 rno-miR-211-3p miRNA MIMAT0017157 Tom1 mRNA 361370 Prediction 0.1828 Tom1 RAID03271387 rno-miR-421-3p miRNA MIMAT0017175 Tom1 mRNA 361370 Prediction 0.1828 Tom1 RAID03512515 rno-miR-296-3p miRNA MIMAT0004742 Tom1 mRNA 361370 Prediction 0.1828 Tom1 RAID03579699 rno-miR-449a-5p miRNA MIMAT0001543 Tom1 mRNA 361370 Prediction 0.2202 Tom1 RAID03683565 rno-miR-344a-5p miRNA MIMAT0004654 Tom1 mRNA 361370 Prediction 0.1828