DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Smurf2 rno-let-7b 16 54 UUGGUGUGUUGG--AUGA---------------UGGAGU ||| ||||:|: |||| :|||| CACC-CACAGCUCUUACUGACCCCUGGCCAACAGCCUCC Smurf2 rno-miR-128a 111 132 UUUUCUCUGGCCAAGUGACACU- ||| |: | |||||||| --UAGAUUCUAGGACACUGUGAG Smurf2 rno-miR-128b 111 132 CUUUCUCUGGCCAAGUGACACU- ||| |: | |||||||| --UAGAUUCUAGGACACUGUGAG Smurf2 rno-miR-129* 125 143 UACGAAAAACCCCAUUCCC-GAA ||: |||| ||||| | CUGUGA---GGGG-AAGGGACA- Smurf2 rno-miR-133a 121 145 -UGUCGACCAACUUCCCCUG----GUU- ||| ||| :|||||| ||| GACA-CUGU---GAGGGGAAGGGACAAU Smurf2 rno-miR-133b 124 145 AUCGACCAACUUCCCCUG----GUU- ||| :|||||| ||| --ACUGU---GAGGGGAAGGGACAAU Smurf2 rno-miR-134 34 66 -GGGAGACCAGUUG------------GUCAGUGU ||| |||| |||| ||| |:| ACCC-CUGGCCAACAGCCUCCUUCAGCAG-CGCU Smurf2 rno-miR-199a 56 81 CUUGUCCAUCAGA--CUUGUGACCC |:||| || ||||:|||| CAGCAGCGCUUCAGAGAACGCUGGA Smurf2 rno-miR-204 117 138 UCCGUAUCCU---ACUGUUUCCCUU- ||||| || |: ||||| ----CUAGGACACUGUGAG-GGGAAG Smurf2 rno-miR-207 118 139 UUCCCUCCUCU--CGGUCCUCUUCG |||| |: |||:|||| ----UAGGACACUGUGAGGGGAAGG Smurf2 rno-miR-20b* 55 84 -GUCUUCACGAG------UGUGACGUCA- ||| || |||: ||:||| ||| UCAGCAGCGCUUCAGAGAACGCUGGAGUA Smurf2 rno-miR-211 118 142 -UCC-GUUUC-CUACUGUUUCCCUU ||| || | || |: :|||||| UAGGACACUGUGA-GGGGAAGGGAC Smurf2 rno-miR-24 25 46 GACAAGGACGACUU--GACUCGGU- ||:| |||| ||| |||| ---CUCUUACUGACCCCUG-GCCAA Smurf2 rno-miR-27a 108 133 CGCCUUGAAUCG--------GUGACACUU- ||||| ||||||||: -----CCUUAGAUUCUAGGACACUGUGAGG Smurf2 rno-miR-27b 110 133 CGUCUU-GAAUCGGUGACACUU- :||| || :| ||||||||: UUAGAUUCUAGGACACUGUGAGG Smurf2 rno-miR-298 85 109 -CCUUCUUGUC-GGGAGGAGACGG- ||| ||||| |||||| ||||: AGGAC-AACAGCCCCUCCCCUGCUC Smurf2 rno-miR-324-3p 54 89 -GGUCGUCGUG-----------GACCCCGUCACC- :|||||||:| |||| |:| || UUCAGCAGCGCUUCAGAGAACGCUGGAGUACAGGA Smurf2 rno-miR-328 125 144 UGC-CUUCCCGUCUCUCCCGGUC :| ||:||| |||| || CUGUGAGGGGA----AGGGACAA Smurf2 rno-miR-331 114 136 -AAGAUCCUAUCCGGGUCCCCG |||||||| : ||||| AUUCUAGGACACUGUGAGGGGA Smurf2 rno-miR-336 119 141 -UCUGAU---CUAUACCUUCCCACU :||| || ||||||| AGGACACUGUGAGG-GGAAGGGA-- Smurf2 rno-miR-338 54 82 -AGUUGUUUU--AGUGACUA-CGACCU- |||:||: ||| || |||||| UUCAGCAGCGCUUCAGAGAACGCUGGAG Smurf2 rno-miR-339 68 89 ACUCGAG-GACCUCCUGUCCCU ||| | |||||| ||||| AGAGAACGCUGGAGUACAGGA- Smurf2 rno-miR-343 115 137 -AGACCCGUGUG-C-CUCCCUCU- ||| || |||| | ||||| || UUCUAGG-ACACUGUGAGGG-GAA Smurf2 rno-miR-345 73 97 CGUGACCUGAUCCCCA---GUCGU |:||||| || || |||| ACGCUGGAGUACAGGACAACAGCC Smurf2 rno-miR-347 119 136 ACCCGCUGGGUCUCCCUGU || | ||: |||||: AGGAC-ACUGUGAGGGGA- Smurf2 rno-miR-34a 89 132 -UUGUUGG---------------UC---GAUUCUGUGACGGU ||||:|| || |||:|||||||: | CAACAGCCCCUCCCCUGCUCCUUAGAUUCUAGGACACUGUGAG Smurf2 rno-miR-370 5 44 UUGG-UCCAAGGUGGG-GUCGU-------------CCG- :|| ||| :||||| |||| ||| CGCCGAGGACUCACCCACAGCUCUUACUGACCCCUGGCC Smurf2 rno-miR-378 66 90 UGUGUCCUG-GACCUCA-GUCCUC || || || ||||||| ||||| UCAGAGAACGCUGGAGUACAGGAC Smurf2 rno-miR-412 119 134 UGCCGAUCACCUGGUCCACUUCA |||| ||||:| --------AGGACACUGUGAGGG Smurf2 rno-miR-485 38 54 CUUAAGUAGUGCCGG---UCGGAGA :|||| |||||| ---------CUGGCCAACAGCCUCC Smurf2 rno-miR-503 79 109 GUCAUGACA-----------AGGGCGACGAU ||||| | |||| ||||| GAGUACAGGACAACAGCCCCUCCC-CUGCUC Smurf2 rno-miR-93 47 68 GAUGGACGUGCUUGUCGUGAAAC :||| | |:||||:||| -AGCCUCCUUCAGCAGCGCUUC- Smurf2 rno-let-7b 33 53 uUGGUGUGUUGGAUGAUGGAGu ||| | :::|| || :|||| gACC-CCTGGCCAACAGCCTCc Smurf2 rno-miR-128a 109 130 uuuUCUCUGGCCAAGUGACACU ||| |: | |||||||| cttAGATTCTAGGACACTGTGA Smurf2 rno-miR-128b 109 130 cuuUCUCUGGCCAAGUGACACU ||| |: | |||||||| cttAGATTCTAGGACACTGTGA Smurf2 rno-miR-129* 122 142 uacGAAAAACCCCAUUCCCgaa || | |||| ||||| acaCTGTGAGGGG-AAGGGaca Smurf2 rno-miR-133a 122 144 UGUCGACCAACUUC----CCCUGGUu ||| ||| |||:| ||||| | ACA-CTG--TGAGGGGAAGGGACAAt Smurf2 rno-miR-133b 122 144 aucGACCAACUUC----CCCUGGUu ||| |||:| ||||| | acaCTG--TGAGGGGAAGGGACAAt Smurf2 rno-miR-134 35 53 GGGAGACCAGUUGGUCAGUGu ||| |||| ||| ||| | | CCC-CTGGCCAA-CAGCCTCc Smurf2 rno-miR-204 119 141 UCC-GU-AUCCUACUGUUUCCCUu ||| || |: || |: :|||||| AGGACACTGTGA-GGGGAAGGGAc Smurf2 rno-miR-207 114 138 uucccUCCUCU--CGGUCCUCUUCg |||| | |: |||:|||| attctAGGACACTGTGAGGGGAAGg Smurf2 rno-miR-20b* 56 82 GUCUUCACG-AG-----UGUGACGUCA ||| || || || ||:||| ||| CAGCAGCGCTTCAGAGAACGCTGGAGT Smurf2 rno-miR-211 119 141 UCC-GUUUCCUACUGUUUCCCUu ||| || | : |: :|||||| AGGACACTGTGAGGGGAAGGGAc Smurf2 rno-miR-24 22 44 GACAAGGACGACU--UGACUCGGU | | ||:| |||| ||| |||| CAGCTCTTACTGACCCCTG-GCCA Smurf2 rno-miR-27a 111 131 cgccuuGAAUCGGUGACACUu || :| |||||||| tagattCTAGGACACTGTGAg Smurf2 rno-miR-27b 110 131 cgUCU-UGAAUCGGUGACACUu ||| || :| |||||||| ttAGATTCTAGGACACTGTGAg Smurf2 rno-miR-324-3p 42 64 GGUCGUC-GUGGACCCCGUCACc ||| ||| | ||| |||| | CCAACAGCCTCCTTCAGCAGCGc Smurf2 rno-miR-328 124 143 UG-CCUUCCCGUCUCUCCCGGUc || | :|||| || |||| || ACTGTGAGGG--GA-AGGGACAa Smurf2 rno-miR-331 115 135 AAGAUCCUAUCCGGGUCCCCg |||||||| | : ||||| TTCTAGGACACTGTGAGGGGa Smurf2 rno-miR-336 122 142 UCUGAUCUAUACCUUCCCacu | |||: : : ||||||| ACACTGTGAGGGGAAGGGaca Smurf2 rno-miR-338 55 80 AGUUGUUUU--AGUGAC-UACGACCU |||:||: : ||| | | |||||| TCAGCAGCGCTTCAGAGAACGCTGGA Smurf2 rno-miR-339 68 89 aCUCGAG-GACCUCCUGUCCcu ||| | |||||| ||||| aGAGAACGCTGGAGTACAGGac Smurf2 rno-miR-343 116 136 AGACCCGUGUG-C-CUCCCucu ||| || |||| | ||||| TCTAGG-ACACTGTGAGGGgaa Smurf2 rno-miR-347 124 142 acccgcugggucUCCCUGU ||||||| actgtgaggggaAGGGACA Smurf2 rno-miR-34a 108 130 uuguuggucGAUUCUGUGACggu |||:||||||| ccttagattCTAGGACACTGtga Smurf2 rno-miR-370 43 63 uUGGUCCAAGGUGG-GGUCGUCcg | ||| || || :|||||| cAACAG---CCTCCTTCAGCAGcg Smurf2 rno-miR-412 113 138 ugccGAUCACCUG-G----UCCACUUCa ||| |||| | ||| |||| gattCTA--GGACACTGTGAGGGGAAGg Smurf2 rno-miR-485 28 53 cuUAAGUAGUG-CCG---GUCGGAGa | | | | | ||| ||||||| ttACTGACCCCTGGCCAACAGCCTCc Smurf2 rno-miR-503 84 108 GUC---AUGACAAG--GGCGACGAu ||| || | | || ||||| CAGGACAACAGCCCCTCCCCTGCTc Smurf2 rno-miR-93 46 68 GAUGGACGUGCUUGUCGUGAAac | :||| | : |:||||:||| CAGCCTCCTTCAGCAGCGCTTca Smurf2 rno-miR-128a 123 130 UUU---------------------UCUCUGGCCAAGUGACACU ||| | | |||||||| ACAACAGCCCCUCCCCUGCUCCUUAGAUUCUAGGACACUGUGAG Smurf2 rno-miR-128b 123 130 CUU---------------------UCUCUGGCCAAGUGACACU ||| | | |||||||| ACAACAGCCCCUCCCCUGCUCCUUAGAUUCUAGGACACUGUGAG Smurf2 rno-miR-27a 124 131 ----------------CGCCUUGAAUCG--------GUGACACUU || ||||| ||||||||: CAACAGCCCCUCCCCUGCUC--CUUAGAUUCUAGGACACUGUGAGG Smurf2 rno-miR-27b 124 131 C---------------------GUCUU-GAAUCGGUGACACUU :||| || :| ||||||||: CAACAGCCCCUCCCCUGCUCCUUAGAUUCUAGGACACUGUGAGG Smurf2 rno-miR-485 46 53 CUUAAGUA-GUG-----------------CCG---GUCGGAGA |:| ||| ||| ||| ||||||| GGACUCACCCACAGCUCUUACUGACCCCUGGCCAACAGCCUCC

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Smurf2 RAID00142748 rno-miR-23b-3p miRNA MIMAT0000793 Smurf2 mRNA 303614 Prediction 0.1828 Smurf2 RAID00188984 rno-miR-125b-2-3p miRNA MIMAT0026467 Smurf2 mRNA 303614 Prediction 0.1828 Smurf2 RAID00324602 rno-miR-3552 miRNA MIMAT0017813 Smurf2 mRNA 303614 Prediction 0.1828 Smurf2 RAID00348406 rno-miR-6320 miRNA MIMAT0025058 Smurf2 mRNA 303614 Prediction 0.1828 Smurf2 RAID00359926 rno-miR-764-3p miRNA MIMAT0017370 Smurf2 mRNA 303614 Prediction 0.1828 Smurf2 RAID00401387 rno-miR-301a-3p miRNA MIMAT0000552 Smurf2 mRNA 303614 Prediction 0.1828 Smurf2 RAID00470638 rno-miR-547-3p miRNA MIMAT0012851 Smurf2 mRNA 303614 Prediction 0.1828 Smurf2 RAID00523718 rno-miR-148b-3p miRNA MIMAT0000579 Smurf2 mRNA 303614 Prediction 0.1828 Smurf2 RAID00543726 rno-miR-330-3p miRNA MIMAT0000568 Smurf2 mRNA 303614 Prediction 0.1828 Smurf2 RAID00561924 rno-miR-224-5p miRNA MIMAT0003119 Smurf2 mRNA 303614 Prediction 0.1828 Smurf2 RAID00601537 rno-miR-152-3p miRNA MIMAT0000854 Smurf2 mRNA 303614 Prediction 0.1828 Smurf2 RAID00627856 rno-miR-30d-3p miRNA MIMAT0004722 Smurf2 mRNA 303614 Prediction 0.1828 Smurf2 RAID00646253 rno-miR-128-3p miRNA MIMAT0000834 Smurf2 mRNA 303614 Prediction 0.1828 Smurf2 RAID00650801 rno-miR-223-3p miRNA MIMAT0000892 Smurf2 mRNA 303614 Prediction 0.1828 Smurf2 RAID00664278 rno-miR-130b-3p miRNA MIMAT0000837 Smurf2 mRNA 303614 Prediction 0.1828 Smurf2 RAID00675679 rno-let-7f-2-3p miRNA MIMAT0017090 Smurf2 mRNA 303614 Prediction 0.1828 Smurf2 RAID00834726 rno-miR-3595 miRNA MIMAT0017903 Smurf2 mRNA 303614 Prediction 0.1828 Smurf2 RAID00883984 rno-miR-6329 miRNA MIMAT0025068 Smurf2 mRNA 303614 Prediction 0.1828 Smurf2 RAID01121486 rno-miR-325-3p miRNA MIMAT0004639 Smurf2 mRNA 303614 Prediction 0.1828 Smurf2 RAID01224602 rno-miR-23a-3p miRNA MIMAT0000792 Smurf2 mRNA 303614 Prediction 0.1828 Smurf2 RAID01255278 rno-miR-29a-3p miRNA MIMAT0000802 Smurf2 mRNA 303614 Prediction 0.1828 Smurf2 RAID01263224 rno-miR-135b-5p miRNA MIMAT0000611 Smurf2 mRNA 303614 Prediction 0.1828 Smurf2 RAID01365929 rno-miR-29b-3p miRNA MIMAT0000801 Smurf2 mRNA 303614 Prediction 0.1828 Smurf2 RAID01378588 rno-miR-542-3p miRNA MIMAT0003179 Smurf2 mRNA 303614 Prediction 0.1828 Smurf2 RAID01438408 rno-miR-877 miRNA MIMAT0005285 Smurf2 mRNA 303614 Prediction 0.1828 Smurf2 RAID01448169 rno-miR-294 miRNA MIMAT0012848 Smurf2 mRNA 303614 Prediction 0.1828 Smurf2 RAID01482995 rno-miR-1-5p miRNA MIMAT0003162 Smurf2 mRNA 303614 Prediction 0.1828 Smurf2 RAID01511050 rno-miR-19a-3p miRNA MIMAT0000789 Smurf2 mRNA 303614 Prediction 0.1828 Smurf2 RAID01580991 rno-miR-19b-3p miRNA MIMAT0000788 Smurf2 mRNA 303614 Prediction 0.1828 Smurf2 RAID01601968 rno-miR-137-3p miRNA MIMAT0000843 Smurf2 mRNA 303614 Prediction 0.2202 Smurf2 RAID01687843 rno-miR-130a-3p miRNA MIMAT0000836 Smurf2 mRNA 303614 Prediction 0.1828 Smurf2 RAID01728101 rno-miR-200b-3p miRNA MIMAT0000875 Smurf2 mRNA 303614 Prediction 0.1828 Smurf2 RAID01752366 rno-miR-883-3p miRNA MIMAT0005290 Smurf2 mRNA 303614 Prediction 0.1828 Smurf2 RAID01778094 rno-miR-124-3p miRNA MIMAT0000828 Smurf2 mRNA 303614 Prediction 0.2202 Smurf2 RAID01795218 rno-miR-96-3p miRNA MIMAT0017110 Smurf2 mRNA 303614 Prediction 0.1828 Smurf2 RAID01959919 rno-miR-21-3p miRNA MIMAT0004711 Smurf2 mRNA 303614 Prediction 0.1828 Smurf2 RAID02042658 rno-miR-3557-3p miRNA MIMAT0017820 Smurf2 mRNA 303614 Prediction 0.1828 Smurf2 RAID02044620 rno-miR-9a-3p miRNA MIMAT0004708 Smurf2 mRNA 303614 Prediction 0.2202 Smurf2 RAID02264710 rno-miR-6325 miRNA MIMAT0025064 Smurf2 mRNA 303614 Prediction 0.1828 Smurf2 RAID02328114 rno-miR-485-5p miRNA MIMAT0003203 Smurf2 mRNA 303614 Prediction 0.1828 Smurf2 RAID02360079 rno-miR-148a-3p miRNA MIMAT0035725 Smurf2 mRNA 303614 Prediction 0.1828 Smurf2 RAID02368138 rno-miR-200c-3p miRNA MIMAT0000873 Smurf2 mRNA 303614 Prediction 0.1828 Smurf2 RAID02460270 rno-miR-216a-3p miRNA MIMAT0017160 Smurf2 mRNA 303614 Prediction 0.1828 Smurf2 RAID02635603 rno-miR-9a-5p miRNA MIMAT0000781 Smurf2 mRNA 303614 Prediction 0.2202 Smurf2 RAID02826751 rno-miR-299b-3p miRNA MIMAT0017834 Smurf2 mRNA 303614 Prediction 0.1828 Smurf2 RAID02909652 rno-miR-301b-3p miRNA MIMAT0005304 Smurf2 mRNA 303614 Prediction 0.1828 Smurf2 RAID02991232 rno-miR-153-5p miRNA MIMAT0017135 Smurf2 mRNA 303614 Prediction 0.1828 Smurf2 RAID03005302 rno-miR-3592 miRNA MIMAT0017895 Smurf2 mRNA 303614 Prediction 0.1828 Smurf2 RAID03177105 rno-miR-543-3p miRNA MIMAT0003175 Smurf2 mRNA 303614 Prediction 0.1828 Smurf2 RAID03252194 rno-miR-377-3p miRNA MIMAT0003123 Smurf2 mRNA 303614 Prediction 0.1828 Smurf2 RAID03380624 rno-miR-568 miRNA MIMAT0012832 Smurf2 mRNA 303614 Prediction 0.1828 Smurf2 RAID03401323 rno-miR-135a-5p miRNA MIMAT0000841 Smurf2 mRNA 303614 Prediction 0.1828 Smurf2 RAID03496606 rno-miR-411-3p miRNA MIMAT0017304 Smurf2 mRNA 303614 Prediction 0.1828 Smurf2 RAID03505017 rno-miR-32-3p miRNA MIMAT0017103 Smurf2 mRNA 303614 Prediction 0.1828 Smurf2 RAID03540715 rno-miR-3586-5p miRNA MIMAT0017880 Smurf2 mRNA 303614 Prediction 0.1828 Smurf2 RAID03566726 rno-miR-6332 miRNA MIMAT0025073 Smurf2 mRNA 303614 Prediction 0.1828 Smurf2 RAID03624234 rno-miR-93-3p miRNA MIMAT0017109 Smurf2 mRNA 303614 Prediction 0.1828 Smurf2 RAID03803216 rno-miR-29c-3p miRNA MIMAT0000803 Smurf2 mRNA 303614 Prediction 0.1828 Smurf2 RAID03853516 rno-miR-429 miRNA MIMAT0001538 Smurf2 mRNA 303614 Prediction 0.1828 Smurf2 RAID04037011 rno-miR-466b-3p miRNA MIMAT0017285 Smurf2 mRNA 303614 Prediction 0.1828 Smurf2 RAID04060420 rno-miR-92a-2-5p miRNA MIMAT0017108 Smurf2 mRNA 303614 Prediction 0.1828