DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G045372 Nck1 Rattus norvegicus 300955

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Nck1 rno-let-7d* 173 195 UCUUUCCGUCGUCC--AGCAUAUC- ||||||: ||||:||| ---UAGGCAGUGCAUCUCGUGUAGA Nck1 rno-miR-101b 82 100 GAAGUCGAUAGUGUCAUGACAU |||: |||:|||| ----UGCUGGGAAAGUGCUGUU Nck1 rno-miR-107 63 101 -ACUA-UCGGG--ACAUG----------UUACGACGA- || :||| |||:| |:|||||:| GUGUUGGGCCAGUUGUGCUUGCUGGGAAAGUGCUGUUU Nck1 rno-miR-129* 76 98 -UACGAAAAACCCCAUUCCCGAA :||||| |||| ||| ||| UGUGCUUGCUGGGA-AAGUGCUG Nck1 rno-miR-130b 152 175 UACGGGAAAGUA---GUAACGUGAC |||| ||| :||||||: -AGCCCAUACAUACAUAUUGCAUA- Nck1 rno-miR-142-5p 90 113 CAUCACGA--AAGA-UGAAAUAC- |||||| |||| ||| |||| -AAGUGCUGUUUCUAACUGUAUGA Nck1 rno-miR-143 169 190 ACUCGA---UGUCACGAAGUAGAGU- || :|||||| |||||: --UGCAUAGGCAGUGC---AUCUCGU Nck1 rno-miR-15b 63 88 -AC-AUUUGGUACUACACGA-CGAU- || |:::||| |||||| |||: GUGUUGGGCCAGU-UGUGCUUGCUGG Nck1 rno-miR-17 114 144 -UGAUGGACGUGAC----AUUCGUGAAAC- |||: |||:|| |:||:|:|||| AACUGACUGUACAAUACAUGAGUAUUUUGU Nck1 rno-miR-18 167 188 AUAGACGUGAUC--UACGUGGAAU :||||: :| :||||:|| --AUUGCAUAGGCAGUGCAUCUC- Nck1 rno-miR-181b 2 24 GGGUG-GCUGUCGUUACUUACAA |::| || ||||||||| || ACUGCUCGUCAGCAAUGACUGC- Nck1 rno-miR-184 199 224 UGGGAAUAG---UCAAGAGGCAGGU :|:||||: :|| :||:|||: GUCUUUAUUCUUGGUCUUCUGUCUU Nck1 rno-miR-185 235 252 CUUGACGGAAAGAGAGGU :|||::|||||||:: -UGCUGUUUUUCUCUUUC Nck1 rno-miR-193 48 78 GACC--CUGAA------AC-AUCCGGUCAA- || |||| || |:|||||||| -CGGAAGACUGAGAAAGUGUUGGGCCAGUUG Nck1 rno-miR-194 304 336 -AGGUGUACC-UC----------AACGACAAUGU |::|:|||| || |||||||| CUUUAUAUGGAAGAAUCCUUUUAUUGCUGUUU-- Nck1 rno-miR-195 69 88 -CGGUUAUAAAGACACGA-CGAU- ||||:| |||||| |||: GGCCAGU-----UGUGCUUGCUGG Nck1 rno-miR-200a 162 183 -UGUAGCAAUG-GUCUGUCACAAU |||| ||:| :||:||||| UACAUA-UUGCAUAGGCAGUGC-- Nck1 rno-miR-20b 119 144 UGGACGUGA----UACUCGUGAAAC- |||:|| |||||:|:|||| -ACUGUACAAUACAUGAGUAUUUUGU Nck1 rno-miR-214 69 88 GACGGACAGACACGGACGACA ||| | :|||||:||||| -GGCCAG-UUGUGCUUGCUGG Nck1 rno-miR-296 46 74 -UGUC--CUAACUC-----CCCCCCGGGA :|:| || |||| | ||||| AGCGGAAGACUGAGAAAGUGUUGGGCCA- Nck1 rno-miR-297 155 186 -GUACGUAUGU---ACGUGUG---UAUGUA- ||| |||||| ||||:| :|:||| CCAUACAUACAUAUUGCAUAGGCAGUGCAUC Nck1 rno-miR-30a-3p 43 62 -CGACGUUUGUAGGCUGACUUUC || ||::| ||||||:| CGCAGCGGAA----GACUGAGAA Nck1 rno-miR-324-3p 70 96 -GGUCGU--C-GUGGACCCCGUCACC ||||: | : ||||| |||| GCCAGUUGUGCUUGCUGGGAAAGUGC Nck1 rno-miR-324-5p 69 97 UGUGGU---UACGGGAUCCCCU---ACGC :||| :|||:: |||| ||| -GGCCAGUUGUGCUUGCUGGGAAAGUGCU Nck1 rno-miR-328 46 76 -UGCCUUCCCGUCUCU-------CCCGGUC- :|||||| | |||| ||||||| AGCGGAAGA-CUGAGAAAGUGUUGGGCCAGU Nck1 rno-miR-33 168 186 GUUACGUUGAUGUUACGUG- |||| :||:||||: --UUGCAUAGGCAGUGCAUC Nck1 rno-miR-330 63 86 AGAGAC-GUCCGGG--ACACGAAACG- || ::|||| |||||| ||| ---GUGUUGGGCCAGUUGUGCU-UGCU Nck1 rno-miR-342 84 116 CUGCCC----ACGCUAAAG----ACACACUCU- :||| ||| :|||| ||| ||||| -CUGGGAAAGUGCUGUUUCUAACUGUAUGAGAA Nck1 rno-miR-346 173 196 UCUCCGUC-CGU-GAGUCCGUCUGU |||||| ||| |||: |:||| -UAGGCAGUGCAUCUCGUGUAGAA- Nck1 rno-miR-34b 8 26 GUUAGUCGAUUAAUGUGACGGAU :||||| ||| |||||: -CGUCAGC-AAUG--ACUGCUA- Nck1 rno-miR-350 58 81 CACUUUCACAUACCCGA--AACACUU |||||||| ||||| ||||| -AGAAAGUGU-UGGGCCAGUUGUGC- Nck1 rno-miR-497 66 88 AUGUUUGGUGUCACACG-ACGAC- : :||| ||||| ||||| -UUGGGCCAGU-UGUGCUUGCUGG Nck1 rno-miR-505 48 71 -CC-UUUGG-UCGUUCACAACUG || |:||: || ||||||||: CGGAAGACUGAGAAAGUGUUGGG Nck1 rno-miR-541 292 326 -ACACUGGUUGUAG----------UCUUAGGGAA- || :||| ||| |||||||:|| UUGGU-UCAAAAUCUUUAUAUGGAAGAAUCCUUUU Nck1 rno-miR-92 67 97 GUCCGG-------------CCCUGUUCACGUUAU :|||| |||| |||||| UGGGCCAGUUGUGCUUGCUGGGA-AAGUGCU--- Nck1 rno-miR-96 45 76 -UCGUUUUUA--------CACGAUCACGGUUU |||::||: |||:|:| ||||: CAGCGGAAGACUGAGAAAGUGUUGG-GCCAGU Nck1 rno-let-7d* 170 193 ucUUUCCGU--CGUCCAGCAUAUC | ||||| ||| ||||:||| gcATAGGCAGTGCATCTCGTGTAG Nck1 rno-miR-101b 80 99 GAAGUCGAUAGUGUCAUGACAu ||| |||: | |||:|||| CTT--GCTGGGAAAGTGCTGTt Nck1 rno-miR-107 78 99 ACUAUCGGGACAUGUUACGACGA || | | |: | | |:|||||:| TGCTTG-CTGGGAAAGTGCTGTT Nck1 rno-miR-129* 77 97 uACGAAAAACCCCAUUCCCGAa ||||| | ||| ||| ||| gTGCTTGCT-GGGAAAGTGCTg Nck1 rno-miR-130b 151 175 uaCGGGAAAGUA---GUAACGUgac |||| | ||| :|||||| caGCCCATACATACATATTGCAtag Nck1 rno-miR-141 163 184 gGUAGAAAUGGUCUGUCACaau ||| || :||:||||| aCATATTGCATAGGCAGTGcat Nck1 rno-miR-142-5p 89 111 caUCACG--AAAGA-UGAAAUAC ||||| ||||| ||| |||| aaAGTGCTGTTTCTAACTGTATG Nck1 rno-miR-143 167 188 acuCG-AU--GUCACGAAGUAGAGu || || ||||| |||||| attGCATAGGCAGTG---CATCTCg Nck1 rno-miR-150 53 73 gUGACCAUGUUCCCAACCCucu |||| | ||| |||||| gACTGAGA-AAGTGTTGGGcca Nck1 rno-miR-15b 64 86 AC-AUUUGGUACUACACG-ACGAu || |:::||| | ||||| |||| TGTTGGGCCA-GTTGTGCTTGCTg Nck1 rno-miR-16 69 100 gCGGUU-AUA--AAUG-------CACGACGAu ||||: |:| ||:| ||||||:| gGCCAGTTGTGCTTGCTGGGAAAGTGCTGTTt Nck1 rno-miR-17 115 142 UGAUGGACGUGACAU----UCGUGAAAC |||: |||:|| || ||:|:|||| ACTGACTGTACAATACATGAGTATTTTG Nck1 rno-miR-18 166 188 AUAGACGUGAUC---UACGUGGAau ||| |||| ||| :||||:|| TAT-TGCA-TAGGCAGTGCATCTcg Nck1 rno-miR-181b 2 24 gGGUG-GCUGUCGUUACUUACaa |::| || ||||||||| || aCTGCTCGTCAGCAATGACTGct Nck1 rno-miR-185 234 253 cuuGACGGAA--AGAGAGGu |||::|| |||:||| ttgCTGTTTTTCTCTTTCCt Nck1 rno-miR-193 55 76 GACCCUGAAAC-AUCCGGUCAA ||| || || |:|||||||| CTGAGAAAGTGTTGGGCCAGTT Nck1 rno-miR-194 305 337 AGGUGUACC-UC----------AACGACAAUGu |::|:|||| || |||||||| | TTTATATGGAAGAATCCTTTTATTGCTGTTTCt Nck1 rno-miR-195 70 86 CGGUUAUAAAGACACG-ACGAu ||||:| ||||| |||| GCCAGT-----TGTGCTTGCTg Nck1 rno-miR-200a 163 184 UGUAGCAAUG-GUCUGUCACaau |||| ||:| :||:||||| ACAT-ATTGCATAGGCAGTGcat Nck1 rno-miR-204 401 419 uCCGUAUCCUACUGUUUCCcuu ||||| ||||:||||| tGGCAT---ATGATAAAGGaca Nck1 rno-miR-20b 118 142 ugGACGUG--A--UACUCGUGAAAC |||:|| | |||||:|:|||| gaCTGTACAATACATGAGTATTTTG Nck1 rno-miR-211 401 419 uCCGUUUCCUACUGUUUCCcuu |||| ||||:||||| tGGCA---TATGATAAAGGaca Nck1 rno-miR-214 68 87 gaCGGACAGACACGGACGACa ||| || |||||:||||| ggGCCAGT-TGTGCTTGCTGg Nck1 rno-miR-296 47 74 uGUC--CUAACUC-----CCCCCCGGga |:| || |||| | ||||| gCGGAAGACTGAGAAAGTGTTGGGCCag Nck1 rno-miR-297 144 166 gUACGUAUGUAC--GUGUGUAUGUA ||| | || | ||:|||||||| tATG-ACTCA-GCCCATACATACAT Nck1 rno-miR-30a-3p 44 61 CGACGUUUGUAGGCUGACUUUc || ||::| | ||||||:| GCAGCGGA-A---GACTGAGAa Nck1 rno-miR-324-3p 155 182 GGU-CGU-CGUGGACC----CCGUCACc ||| || ||: | | ||||||| CCATACATACATATTGCATAGGCAGTGc Nck1 rno-miR-324-3p 71 95 GGUCGUCGUG---GACCCCGUCACc ||||: |::| ||||| |||| CCAGTTGTGCTTGCTGGGAAAGTGc Nck1 rno-miR-324-5p 68 96 uguGGUU-ACGGGAUC--CCCU---ACGc |||: ||: || | |||| ||| gggCCAGTTGTGCTTGCTGGGAAAGTGCt Nck1 rno-miR-328 47 74 uGCCUUC-----CCGUCUC-UCCCGGUC |||||| | || | ||||||| gCGGAAGACTGAGAAAGTGTTGGGCCAG Nck1 rno-miR-33 166 184 gUUACGUUGAUGUUACGUg | |||| :||:|||| tATTGCATAGGCAGTGCAt Nck1 rno-miR-330 60 85 agagAC-GUCCGG--GACACGAAacg || ::|||| :||||||| aaagTGTTGGGCCAGTTGTGCTTgct Nck1 rno-miR-342 83 114 CUGCC----CACGCUAAA----GACACACUCU | :|| |||| :||| |||| ||||| GCTGGGAAAGTGCTGTTTCTAACTGTATGAGA Nck1 rno-miR-346 162 182 ucuccgucCGUGAGUCCGUCugu ||| :|||||| tacatattGCA--TAGGCAGtgc Nck1 rno-miR-34b 7 26 guuAGUCGAUUAAUGUGACGgau ||||| ||| ||||| tcgTCAGC-AAT--GACTGCtac Nck1 rno-miR-350 57 81 CACUUUCACAUACCCG--AAACACuu | |||||||| ||||| ||||| GAGAAAGTGT-TGGGCCAGTTGTGct Nck1 rno-miR-497 63 86 auguuugguGUC-ACACG-ACGAC ||| ||||| ||||| gtgttgggcCAGTTGTGCTTGCTG Nck1 rno-miR-505 49 70 CCUU-UGG-UCGUUCACAACug |||| ||: || |||||||| GGAAGACTGAGAAAGTGTTGgg Nck1 rno-miR-541 293 324 ACACUGGUUGUAG----------UCUUAGGGAA || | :||| ||| |||||||:|| TG-GTTCAAAATCTTTATATGGAAGAATCCTTT Nck1 rno-miR-92 80 99 gucCGGCCCUGUUCACGUUAu ||:|||| |||||| :| cttGCTGGGA-AAGTGCTGTt Nck1 rno-miR-96 54 75 UCGUUUUUACACGAUCACGGUuu | ::|:|| |||:| | |||| ACTGAGAAAGTGTT-GGGCCAgt Nck1 rno-miR-193 69 76 ---------------------GACCCUGAAAC-AUCCGGUCAA ||| || || |:|||||||| AACUCGUCACGCAGCGGAAGACUGAGAAAGUGUUGGGCCAGUUG Nck1 rno-miR-297 159 166 GUACGUAUGUAC----------------------GUGUGUAUGUA ||||||| ||:|||||||| ACA--AUACAUGAGUAUUUUGUUAUGACUCAGCCCAUACAUACAUA Nck1 rno-miR-324-3p 175 182 ----------GGUCGU--------------CGUGGACCCCGUCACC :|||| |||: ||||||| UUGUUAUGACUCAGCCCAUACAUACAUAUUGCAUA---GGCAGUGC

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Nck1 RAID00128093 rno-miR-297 miRNA MIMAT0000899 Nck1 mRNA 300955 Prediction 0.1828 Nck1 RAID00543986 rno-miR-137-3p miRNA MIMAT0000843 Nck1 mRNA 300955 Prediction 0.2202 Nck1 RAID01791315 rno-miR-31b miRNA MIMAT0017816 Nck1 mRNA 300955 Prediction 0.1828 Nck1 RAID02377976 rno-miR-3120 miRNA MIMAT0017900 Nck1 mRNA 300955 Prediction 0.1828 Nck1 RAID02969476 rno-miR-340-5p miRNA MIMAT0004650 Nck1 mRNA 300955 Prediction 0.1828 Nck1 RAID03034266 rno-miR-434-3p miRNA MIMAT0005315 Nck1 mRNA 300955 Prediction 0.1828 Nck1 RAID03240424 rno-miR-365-5p miRNA MIMAT0017184 Nck1 mRNA 300955 Prediction 0.1828 Nck1 RAID04000616 rno-miR-21-3p miRNA MIMAT0004711 Nck1 mRNA 300955 Prediction 0.1828