DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004639 rno-miR-325-3p 291796 Usp14 aacuauccuccacgaGUUAUUu |||||| ccuuucaugacuuuaCAAUAAa 2 8 485 506 [rn4:18:1292815-1292836:-] 0.6558 120 6 -5.42 -0.3154 MIMAT0000568 rno-miR-330* 291796 Usp14 agagacguccGGGACACGAAACg :::| ||:|||| gugguuuuuuUUUUUUGUUUUGa 2 14 51 73 [rn4:18:1293248-1293270:-] 0.6558 129 0 -8.79 -0.2769 MIMAT0000574 rno-miR-140* 291796 Usp14 ggcaccaagaugggACACCAu |||||| uauaaauguguguaUGUGGUg 2 8 33 53 [rn4:18:1293268-1293288:-] 0.6558 120 6 -14.28 -0.2204 MIMAT0000604 rno-miR-350 291796 Usp14 cacuuucacauacccgaAACACUu |||||| caugacuuuacaauaaaUUGUGAu 2 8 490 513 [rn4:18:1292808-1292831:-] 0.6558 120 6 -5.51 -0.2669 MIMAT0000607 rno-miR-7a* 291796 Usp14 uaCCGUC--UGACACUAAACAAca ||::| :| | |||||| guGGUGGUUUUUUUUUUUUGUUuu 3 21 48 71 [rn4:18:1293250-1293273:-] 0.6558 123 0 -8.19 -0.2742 MIMAT0000783 rno-miR-10b 291796 Usp14 uguGUUUAAGCCAAGAUGUCcc ||| |: |||||| cauCAAUCUUAAGACUACAGau 3 20 133 154 [rn4:18:1293167-1293188:-] 0.6558 123 0 -8.14 -0.1410 MIMAT0004711 rno-miR-21* 291796 Usp14 cuguCGGGUAGCUGAC-GACAAc |:||| ||||| ||||| uauuGUCCA--GACUGACUGUUg 2 19 460 480 [rn4:18:1292841-1292861:-] 0.6558 127 0 -22.47 -0.7119 MIMAT0004714 rno-miR-26b* 291796 Usp14 cucggUUCAUUACCUCUUGUCc ||| :| |||||||| cucuaAAGAGAAUGAGAACAGa 2 18 93 114 [rn4:18:1293207-1293228:-] 0.6558 157 7 -14.82 -0.9760 MIMAT0004721 rno-miR-30b-3p 291796 Usp14 cugcauuuGUAGGUGUAGGGUc ::||||||||||| agugcugcUGUCCACAUCCCAu 2 15 420 441 [rn4:18:1292880-1292901:-] 0.6558 162 7 -23.76 -0.6776 MIMAT0004731 rno-miR-125b* 291796 Usp14 uccaggguucucGGACUGAAca | |||||| uugcuggccuuuCAUGACUUua 3 11 478 499 [rn4:18:1292822-1292843:-] 0.6558 122 0 -9.59 -0.1911 MIMAT0000847 rno-miR-142-5p 291796 Usp14 ucaucacGAAAG-A-UGAAAUac ||||| | |||||| ugcuggcCUUUCAUGACUUUAca 3 15 479 501 [rn4:18:1292820-1292842:-] 0.6558 132 0 -8.36 -0.2136 MIMAT0004738 rno-miR-199a-3p 291796 Usp14 auUGGUUACACGUCUGA-UGACa | :| ||| |||||| |||| caAGUAUUGUCCAGACUGACUGu 2 21 456 478 [rn4:18:1292843-1292865:-] 0.6558 136 0 -19.08 -0.6222 MIMAT0000902 rno-miR-300-3p 291796 Usp14 cuucucucgAACGGGAACGUAu |||::||||||| accuaugugUUGUUCUUGCAUg 2 14 300 321 [rn4:18:1293000-1293021:-] 0.6558 157 7 -17.48 -0.8682 MIMAT0000902 rno-miR-300-3p 291796 Usp14 cuucucucgaacGGGAACGUAu |::|||||| auucuuuaaaauCUUUUGCAUu 2 11 198 219 [rn4:18:1293102-1293123:-] 0.6558 130 6 -10.34 -0.3158 MIMAT0003162 rno-miR-1* 291796 Usp14 ccCA-UGUAUUU-C-UUCAUACACg || |:||||| | : ||||||| guGUGAUAUAAAUGUGUGUAUGUGg 2 21 27 51 [rn4:18:1293270-1293294:-] 0.6558 157 7 -14.15 -1.0784 MIMAT0005281 rno-miR-871 291796 Usp14 acacuggccgugguuAGACUUAu |:||||| guuuuuuuuuuuuguUUUGAAUa 2 9 54 76 [rn4:18:1293245-1293267:-] 0.6558 124 0 -8.20 -0.1311 MIMAT0005308 rno-miR-380 291796 Usp14 gcguacaaGAUACCAGUUGGua |||| |||||| ucccuugcCUAU--UCAACCca 3 15 254 273 [rn4:18:1293048-1293067:-] 0.6558 127 0 -8.86 -0.1695 MIMAT0005324 rno-miR-598-5p 291796 Usp14 gaGCGUGGUAGCCGUAGUGGCg :|||: :|: :||||||| cuUGCAUGGUUAAUAUCACCGu 2 21 314 335 [rn4:18:1292986-1293007:-] 0.6558 156 7 -25.37 -0.9654 MIMAT0005329 rno-miR-674-5p 291796 Usp14 auguGGU-GAGGGUAGAGUCACg :|| | : :| ||||||| gcucUCAUCGUGUAACUCAGUGc 2 19 402 424 [rn4:18:1292897-1292919:-] 0.6558 145 7 -22.50 -0.8477 MIMAT0005338 rno-miR-770 291796 Usp14 gcaccgggucUGUGCACCACga ::|:|||||| auaaauguguGUAUGUGGUGgu 3 13 34 55 [rn4:18:1293266-1293287:-] 0.6558 128 0 -16.61 -0.3700 MIMAT0012824 rno-miR-513 291796 Usp14 uacuuucuguggaagAACACUu |||||| ugacuuuacaauaaaUUGUGAu 2 8 492 513 [rn4:18:1292808-1292829:-] 0.6558 120 6 -8.67 -0.2646 MIMAT0012826 rno-miR-220 291796 Usp14 uccAGAGACUGUGACACCACc | | || :| ||||||| aaaUGUGUG-UA-UGUGGUGg 2 19 36 54 [rn4:18:1293267-1293285:-] 0.6558 142 7 -17.50 -1.2354 MIMAT0012843 rno-miR-876 291796 Usp14 accacUAAGUGUC-UCUUUAGGu |||| ::| ||||||| uacaaAUUCUUGGCUGAAAUCCa 2 18 226 248 [rn4:18:1293073-1293095:-] 0.6558 152 7 -14.25 -1.2549 MIMAT0012848 rno-miR-294 291796 Usp14 ucuaucccGGAGGUAAAACUc ::|:::|||||| guuuuuuuUUUUUGUUUUGAa 2 14 54 74 [rn4:18:1293247-1293267:-] 0.6558 133 6 -6.52 -0.6833 MIMAT0012852 rno-miR-667 291796 Usp14 gaacccgacccACCG-UCCACAgu || | |||||| uuagcuauuuaUGCCUAGGUGUga 3 13 9 32 [rn4:18:1293289-1293312:-] 0.6558 123 0 -11.85 -0.2525 MIMAT0001619 rno-miR-322 291796 Usp14 agguuUUGUACUUAACGACGAc ||| | |: ||||||| cguguAAC-UCAG-UGCUGCUg 2 18 410 429 [rn4:18:1292892-1292911:-] 0.6558 145 7 -16.26 -0.3786 MIMAT0000552 rno-miR-301a 291796 Usp14 cgaAACUGUUAUGAUAACGUGAc || | ||| || |||||:| uucUUUAAAAU-CUUUUGCAUUa 2 21 199 220 [rn4:18:1293101-1293122:-] 0.6558 146 0 -11.15 -0.2218 MIMAT0000566 rno-miR-329 291796 Usp14 uuuuuccaaucgaccCACACAa |||||| aggugugauauaaauGUGUGUa 2 8 25 46 [rn4:18:1293275-1293296:-] 0.6558 120 6 -10.41 -0.3278 MIMAT0004650 rno-miR-340-5p 291796 Usp14 uuagucAGAGUAACGAAAUAUu |:|||| ||||| | cuggccUUUCAUGACUUUACAa 2 17 481 502 [rn4:18:1292819-1292840:-] 0.6558 128 0 -7.90 -0.1031 MIMAT0000784 rno-miR-15b 291796 Usp14 acAUUUGGUACUACACGACGAu ||| :|| |||||||| ugUAACUCA----GUGCUGCUg 2 21 412 429 [rn4:18:1292892-1292909:-] 0.6558 147 7 -19.32 -0.4052 MIMAT0000785 rno-miR-16 291796 Usp14 gcgguUAUAAAUGCACGACGAu :|| | |||||||| aucguGUAACUCAGUGCUGCUg 2 18 408 429 [rn4:18:1292892-1292913:-] 0.6558 149 7 -17.51 -0.4021 MIMAT0000788 rno-miR-19b 291796 Usp14 agucaAAACGUACCUAAACGUGu ||| | ||||||: cauucUUUAAAAUCUUUUGCAUu 2 19 197 219 [rn4:18:1293102-1293124:-] 0.6558 126 0 -5.22 -0.2636 MIMAT0000788 rno-miR-19b 291796 Usp14 agucaaaacguaccuaAACGUGu |||||| uuagcaaugauguuuaUUGCACa 2 8 278 300 [rn4:18:1293021-1293043:-] 0.6558 120 6 -12.53 -0.1371 MIMAT0000789 rno-miR-19a 291796 Usp14 agucaAAACGUAUCUAAACGUGu ||| | ||||||: cauucUUUAAAAUCUUUUGCAUu 2 19 197 219 [rn4:18:1293102-1293124:-] 0.6558 126 0 -5.88 -0.2636 MIMAT0000789 rno-miR-19a 291796 Usp14 agucaaaacguaucuaAACGUGu |||||| uuagcaaugauguuuaUUGCACa 2 8 278 300 [rn4:18:1293021-1293043:-] 0.6558 120 6 -11.96 -0.1371 MIMAT0000792 rno-miR-23a 291796 Usp14 ccuuuagggaccgUUACACua |||||| uaggugugauauaAAUGUGug 3 9 24 44 [rn4:18:1293277-1293297:-] 0.6558 120 0 -8.79 -0.1855 MIMAT0000793 rno-miR-23b 291796 Usp14 ccauuagggaccgUUACACua |||||| uaggugugauauaAAUGUGug 3 9 24 44 [rn4:18:1293277-1293297:-] 0.6558 120 0 -10.54 -0.1855 MIMAT0000795 rno-miR-25 291796 Usp14 agucUGGCUCUGUUCACGUUAc |:| | :::||||||| ucccAUC-AACUGGGUGCAAUc 2 19 436 456 [rn4:18:1292865-1292885:-] 0.6558 144 7 -13.00 -0.4105 MIMAT0000801 rno-miR-29b 291796 Usp14 uugugacuaaaguuuaCCACGAu |||||| cagauaauuacguuugGGUGCUa 2 8 150 172 [rn4:18:1293149-1293171:-] 0.6558 120 6 -13.29 -0.1335 MIMAT0000802 rno-miR-29a 291796 Usp14 auuggcuaaagucuaCCACGAu |||||| agauaauuacguuugGGUGCUa 2 8 151 172 [rn4:18:1293149-1293170:-] 0.6558 120 6 -13.83 -0.1335 MIMAT0000803 rno-miR-29c 291796 Usp14 auuggcuaaaguuuaCCACGAu |||||| agauaauuacguuugGGUGCUa 2 8 151 172 [rn4:18:1293149-1293170:-] 0.6558 120 6 -13.29 -0.1335 MIMAT0000810 rno-miR-31 291796 Usp14 gucgauacggucguaGAACGGa |||||| aaauccauuuuauccCUUGCCu 2 8 242 263 [rn4:18:1293058-1293079:-] 0.6558 120 6 -12.82 -0.1475 MIMAT0000811 rno-miR-32 291796 Usp14 acGUUGAAUCAUUACACGUUAu | |: | |:: ||||||| ucCCAUCAACUGG-GUGCAAUc 2 21 436 456 [rn4:18:1292865-1292885:-] 0.6558 142 7 -13.19 -0.3867 MIMAT0000816 rno-miR-92a 291796 Usp14 guccggcccuGUUCACGUUAu :::||||||| ucccaucaacUGGGUGCAAUc 2 12 436 456 [rn4:18:1292865-1292885:-] 0.6558 143 7 -13.10 -0.4136 MIMAT0000828 rno-miR-124 291796 Usp14 ccguaaguggcgcACGGAAu |||||| gcugcccguccuuUGCCUUa 2 8 342 361 [rn4:18:1292960-1292979:-] 0.6558 120 6 -15.20 -0.1100 MIMAT0000836 rno-miR-130a 291796 Usp14 uacGGGAAAAUU---GUAACGUGAc ::|||| || : |||||:| acaUUCUUUAAAAUCUUUUGCAUUa 2 20 196 220 [rn4:18:1293101-1293125:-] 0.6558 134 0 -9.65 -0.2259 MIMAT0000837 rno-miR-130b 291796 Usp14 uacGGGAAA--GUAG-UAACGUGAc ::|||| ||| |||||:| acaUUCUUUAAAAUCUUUUGCAUUa 2 20 196 220 [rn4:18:1293101-1293125:-] 0.6558 133 0 -13.66 -0.2279 MIMAT0000838 rno-miR-132 291796 Usp14 gcuGGUACCGACAUCUGACAAu ||| | || ||||||| uguCCA-GACU---GACUGUUg 2 20 463 480 [rn4:18:1292841-1292858:-] 0.6558 141 7 -14.63 -0.6393 MIMAT0000843 rno-miR-137 291796 Usp14 gaugcgcauaagAAUUCGUUAUu || ||||||: uucaacccaagaUUUAGCAAUGa 2 12 265 287 [rn4:18:1293034-1293056:-] 0.6558 131 0 -8.15 -0.1635 MIMAT0000863 rno-miR-186 291796 Usp14 ucgGGUUUUCCUCUUAAGAAAc |:| || || ||||||| uagCUACAA-GA-CAUUCUUUa 2 20 186 205 [rn4:18:1293116-1293135:-] 0.6558 147 7 -9.49 -1.1663 MIMAT0000869 rno-miR-194 291796 Usp14 agguguACCUCAACGACAAUGu || | | :|||||| aucuuuUGCAUUAAUUGUUACa 2 17 208 229 [rn4:18:1293092-1293113:-] 0.6558 132 6 -10.83 -0.4977 MIMAT0000870 rno-miR-195 291796 Usp14 cgguUAUAAAGACACGACGAu :|| || |||||||| ucguGUAACUCAGUGCUGCUg 2 18 409 429 [rn4:18:1292892-1292912:-] 0.6558 157 7 -17.49 -0.4021 MIMAT0000871 rno-miR-196a 291796 Usp14 ggGUUGUUGUA---CUUUGAUGGAu :||: ||:| |: :|||||| gaUAAUUACGUUUGGGUGCUACCUa 2 21 152 176 [rn4:18:1293145-1293169:-] 0.6558 135 6 -16.85 -0.1067 MIMAT0000879 rno-miR-206 291796 Usp14 ggugugUGAAGGAAUGUAAGGu :|| | ||||||: aagguaGCUACAAGACAUUCUu 2 17 182 203 [rn4:18:1293118-1293139:-] 0.6558 128 0 -11.10 -0.1151 MIMAT0000883 rno-miR-212 291796 Usp14 acCGGCACUGACCUCUGACAAu |:| |||| ||||||| uuGUCCAGACU---GACUGUUg 2 21 462 480 [rn4:18:1292841-1292859:-] 0.6558 148 7 -16.27 -0.6319 MIMAT0004742 rno-miR-296 291796 Usp14 ccucuCGGAGGUGGGUUGGGag |||| |::|||||| cccuuGCCU--AUUCAACCCaa 3 18 255 274 [rn4:18:1293047-1293066:-] 0.6558 134 0 -18.60 -0.2353 MIMAT0001082 rno-miR-196b 291796 Usp14 ggguUGUUGUCCUUUGAUGGAu ||: : ||: :|||||| aauuACGUUUGGGUGCUACCUa 2 19 155 176 [rn4:18:1293145-1293166:-] 0.6558 138 6 -18.66 -0.1078 MIMAT0001626 rno-miR-431 291796 Usp14 acGUACUGCCG--GACGUUCUGu ::| | ||: || |||||| aaUGUAAAGGUAGCUACAAGACa 2 20 176 198 [rn4:18:1293123-1293145:-] 0.6558 122 6 -15.05 -0.1881 MIMAT0003123 rno-miR-377 291796 Usp14 gguuuucaACGGAAACACACUa ||||| |||||| gcuauuuaUGCCUAGGUGUGAu 2 15 12 33 [rn4:18:1293288-1293309:-] 0.6558 130 6 -20.62 -0.1143 MIMAT0003123 rno-miR-377 291796 Usp14 gguuuucaacggaaACACACua |||||| aggugugauauaaaUGUGUGua 3 9 25 46 [rn4:18:1293275-1293296:-] 0.6558 120 0 -9.44 -0.2376 MIMAT0003125 rno-miR-1 291796 Usp14 uaugugUGAAGAAAUGUAAGGu :|| | ||||||: aagguaGCUACAAGACAUUCUu 2 17 182 203 [rn4:18:1293118-1293139:-] 0.6558 128 0 -8.21 -0.1151 MIMAT0003176 rno-miR-539 291796 Usp14 ugugugguucCUAUUAAAGAgg || |||||| uuuuuguuuuGAAUAUUUCUau 3 13 62 83 [rn4:18:1293238-1293259:-] 0.6558 124 0 -3.78 -0.2210 MIMAT0003192 rno-miR-379 291796 Usp14 ggAUGCAAGGUAUCA-GAUGGu ||||||: :|| ||||| auUACGUUU--GGGUGCUACCu 2 20 156 175 [rn4:18:1293146-1293165:-] 0.6558 120 0 -18.30 -0.8462 MIMAT0003210 rno-miR-363 291796 Usp14 augucuaccuauggCACGUUAa ||||||| aucccaucaacuggGUGCAAUc 2 9 435 456 [rn4:18:1292865-1292886:-] 0.6558 140 7 -10.66 -0.4074 MIMAT0003383 rno-miR-497 291796 Usp14 auguUUGGUGUCACACGACGAc |||: || |||||||| guguAACU-CA--GUGCUGCUg 2 19 411 429 [rn4:18:1292892-1292910:-] 0.6558 149 7 -19.50 -0.3990 MIMAT0005303 rno-miR-196c 291796 Usp14 ggGUUGUUGUG---CUUUGAUGGAu :||: ||:: |: :|||||| gaUAAUUACGUUUGGGUGCUACCUa 2 21 152 176 [rn4:18:1293145-1293169:-] 0.6558 131 6 -17.17 -0.1078 MIMAT0005304 rno-miR-301b 291796 Usp14 cgaAACUGUUAUGGUAACGUGAc || | ||| |: |||||:| uucUUUAAAAU-CUUUUGCAUUa 2 21 199 220 [rn4:18:1293101-1293122:-] 0.6558 142 0 -9.98 -0.2218 MIMAT0005320 rno-miR-495 291796 Usp14 uucuUCACGU---GGUACA-AACAAa | |||| |:|||| ||||| guuuAUUGCACACCUAUGUGUUGUUc 2 19 289 314 [rn4:18:1293007-1293032:-] 0.6558 125 0 -13.57 -0.9909 MIMAT0005320 rno-miR-495 291796 Usp14 uucuucacgugguacAAACAAa |||||| uggugguuuuuuuuuUUUGUUu 2 8 49 70 [rn4:18:1293251-1293272:-] 0.6558 120 6 -5.14 -0.3056 MIMAT0005335 rno-miR-758 291796 Usp14 ccaaucACCUGGU--CCAGUGUUu || |::| ||:|||| aucuuuUGCAUUAAUUGUUACAAa 2 17 208 231 [rn4:18:1293090-1293113:-] 0.6558 127 0 -9.03 -0.1335 MIMAT0005340 rno-miR-92b 291796 Usp14 ccuccggcccuGCUCACGUUAu :|:||||||| aucccaucaacUGGGUGCAAUc 2 12 435 456 [rn4:18:1292865-1292886:-] 0.6558 147 7 -14.08 -0.4136 MIMAT0005341 rno-miR-488 291796 Usp14 cugguucuuuGUCGGAAAGUu ::|||||||| ugacuguugcUGGCCUUUCAu 2 12 472 492 [rn4:18:1292829-1292849:-] 0.6558 147 7 -15.98 -0.5830

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Usp14; rCG_41276 rno-let-7b 144 177 -UUGGUGU--GUUGG---------AUGAUGGAGU :||:||| :||:: |:|||||| AGACUACAGAUAAUUACGUUUGGGUGCUACCUA- Usp14; rCG_41276 rno-let-7i 148 177 -UGUC-----GUGU---UUGAUGAUGGAGU |||| :||: :: |:|||||| UACAGAUAAUUACGUUUGGGUGCUACCUA- Usp14; rCG_41276 rno-miR-1* 25 52 CCCA---UGUAUUU-CUU-CAUACACG ||| |:||||| | ||||||| AGGUGUGAUAUAAAUGUGUGUAUGUGG Usp14; rCG_41276 rno-miR-103 405 430 -AGUAUCGGGACAU---GUUACGACGA- ||| :| |||| ||:||||||| CUCA---UCGUGUAACUCAGUGCUGCUG Usp14; rCG_41276 rno-miR-107 397 430 -ACUAUCGGG------ACAU---GUUACGACGA- || ||:| |||| ||:||||||| GUGUU-GCUCUCAUCGUGUAACUCAGUGCUGCUG Usp14; rCG_41276 rno-miR-124a 319 363 -ACCGUA---AGUGGCG---CA---------------CGGAAUU |||: ||||||: || |||||| AUGGUUAAUAUCACCGUUCAGUAGCUGCCCGUCCUUUGCCUUAU Usp14; rCG_41276 rno-miR-132 472 498 GCUGGUACCGACAU-------CUGACAAU |||::| |||| |||| UGACUGUUGCUGGCCUUUCAUGACUU--- Usp14; rCG_41276 rno-miR-15b 384 406 ACAUUUGGUACUACACGACGAU ||::| |||| |||:|||| GGUGGAAAAUGAAGUGUUGCUC Usp14; rCG_41276 rno-miR-16 401 431 GCGGU-----UAUAAAUG--CACGACGAU- ||: :|:| ||||||||: UGCUCUCAUCGUGUAACUCAGUGCUGCUGU Usp14; rCG_41276 rno-miR-184 331 354 UGGGAAUAGUCAA-GA--GGCAGGU || ||||| || |||||| -ACCGU-UCAGUAGCUGCCCGUCCU Usp14; rCG_41276 rno-miR-187 183 201 GCCGACGUUGUGUUCUGUGCU ||: || :||||||||: AGGUAGC--UACAAGACAUU- Usp14; rCG_41276 rno-miR-189 325 348 UGACUAUAGU--CGAGUCAUCCGUG- |||||| |:||||||| ::| ---AAUAUCACCGUUCAGUAGCUGCC Usp14; rCG_41276 rno-miR-195 405 431 CGGU--UAUAA--AGACACGACGAU- :|| :|:| || ||||||||: CUCAUCGUGUAACUCAGUGCUGCUGU Usp14; rCG_41276 rno-miR-196a 153 178 GGUUGUUGUA---CUUUGAUGGAU- :||: ||:| | :||||||| AUAAUUACGUUUGGGUGCUACCUAA Usp14; rCG_41276 rno-miR-196b 151 178 GGUUGUUGU------CCUUUGAUGGAU- :|:||: || :||||||| -AGAUAAUUACGUUUGGGUGCUACCUAA Usp14; rCG_41276 rno-miR-205 378 399 -GUCUGAGGCCACCU--UACUUCCU :||: |||||| |||||| CUAGGA---GGUGGAAAAUGAAGU- Usp14; rCG_41276 rno-miR-212 463 482 CCGGCACUGACCUCUGACAAU- |:| |||| |||||||: UGUCCAGACU---GACUGUUGC Usp14; rCG_41276 rno-miR-223 446 477 CCCCAUA---------AACU-GUUUGACUGU ||||: ||| ||:|||||| UGGGUGCAAUCAAGUAUUGUCCAGACUGACU Usp14; rCG_41276 rno-miR-25 417 457 -AGUC----UGGCUC-UGU------------UCACGUUAC |||| :|:| ||| :||||||| CUCAGUGCUGCUGUCCACAUCCCAUCAACUGGGUGCAAUC Usp14; rCG_41276 rno-miR-27a 110 131 CGCCUUGAAUCGGUGA-CACUU | |||| ||||||| ||| ACAGAACCAAGCCACUUGUGU- Usp14; rCG_41276 rno-miR-27b 110 131 CGUCUUGAAUCGGUGA-CACUU |||||| ||||||| ||| ACAGAACCAAGCCACUUGUGU- Usp14; rCG_41276 rno-miR-298 337 360 CCUUC-UUGUCGGG-AGGAGACGG- || |:| |||| ||||:|||| --CAGUAGCUGCCCGUCCUUUGCCU Usp14; rCG_41276 rno-miR-300 308 323 CUUCUCUCGAACGGGAACGUAU- |||::|||||||: --------GUUGUUCUUGCAUGG Usp14; rCG_41276 rno-miR-30a-3p 422 451 -CGACGUU---UGUAGGC----UGACUUUC ||||| |||||| ||||:: UGCUGCUGUCCACAUCCCAUCAACUGGGU- Usp14; rCG_41276 rno-miR-31 339 361 -GUCGAUACGGUCGUAGAACGGA- :||| |||| |: :|||||| GUAGC--UGCCCGUCCUUUGCCUU Usp14; rCG_41276 rno-miR-32 441 457 CGUUGAAUCAUUACACGUUAU ||||| ||||||| UCAACUGG-----GUGCAAUC Usp14; rCG_41276 rno-miR-322 475 495 -ACAACG-UCGCGAAGUACAAA |||||| :|| :|||||| CUGUUGCUGGCCUUUCAUGA-- Usp14; rCG_41276 rno-miR-326 443 472 -UGACCUCC-----UUCC---CGGGUCUCC |||||: | ||| |:||||| AACUGGGUGCAAUCAAGUAUUGUCCAGAC- Usp14; rCG_41276 rno-miR-33 410 429 GUUACGUUGAUGUUACG-UG- :||:|||| ||:||| :| -CGUGUAACU-CAGUGCUGCU Usp14; rCG_41276 rno-miR-330 334 359 AGAGACGUC--CGGGACACGAAACG- :|| |:|| |||| || |||||| GUUCAGUAGCUGCCC-GUCCUUUGCC Usp14; rCG_41276 rno-miR-335 295 319 -UGUAAAAAGCAAUAACGAGAACU :|| |:|||:||||| UGCACACCUAUGUGUUGUUCUUGC Usp14; rCG_41276 rno-miR-338 454 486 -AGUU-GUUUUAG---UGACU----ACGACCU |||| :| :|| ||||| |||||| AUCAAGUAUUGUCCAGACUGACUGUUGCUGGC Usp14; rCG_41276 rno-miR-342 25 46 CUGCCCACGCUAAAG--ACACACUCU ||||:||| | |||||| ---AGGUGUGAUAUAAAUGUGUGU-- Usp14; rCG_41276 rno-miR-34b 8 27 GUUAGUCGAUUAAUGUGACGGAU- |:||||| ||| |||||| --UUUAGCUAUUUA---UGCCUAG Usp14; rCG_41276 rno-miR-369-3p 446 467 UUCUA-GUUGGUACAUAAUAA :|:| |||:|| |||||:| UGGGUGCAAUCAAGUAUUGUC Usp14; rCG_41276 rno-miR-377 19 35 GGUUUUCAACGGAAACACACUA- ||||| ||||||| -------AUGCCUAGGUGUGAUA Usp14; rCG_41276 rno-miR-382* 305 326 UUCACAACAGGCACUUACUAA- |||||||:| || |||:|| -UGUGUUGUUCUUGCAUGGUUA Usp14; rCG_41276 rno-miR-424 464 485 -AGGUUUUGUACUUAACGACGAC- ||| |:|| ||| ||:||||| GUCC-AGAC-UGAC-UGUUGCUGG Usp14; rCG_41276 rno-miR-431 167 200 -ACG------UACUG--CCG--GACGUUCUGU- ||| ||| ||: || ||||||| GUGCUACCUAAUGUAAAGGUAGCUACAAGACAU Usp14; rCG_41276 rno-miR-433 473 496 UGUGGCUCC--UCGGGUAGUACUA ||:| | :|||: |||||| -GACUGUUGCUGGCCUUUCAUGAC Usp14; rCG_41276 rno-miR-497 400 431 -AUGUUUGGUGUCA--------CACGACGAC- |:| :||: || ||||||||| UUGCUC-UCAUCGUGUAACUCAGUGCUGCUGU Usp14; rCG_41276 rno-miR-503 457 485 GUCAUGACAAG-------GGCGACGAU- ||||:||| |:|:||||: AAGUAUUGUCCAGACUGACUGUUGCUGG Usp14; rCG_41276 rno-miR-540 465 489 -GGUCCUAGCUGGA---GACUGGA- |||| :|||: |||:||| UCCAGAC-UGACUGUUGCUGGCCUU Usp14; rCG_41276 rno-miR-541 235 261 ACACUGGUU----GUAGUCUUAGGGAA- ||:|::| |||: ||||||| -UUGGCUGAAAUCCAUUUU-AUCCCUUG Usp14; rCG_41276 rno-miR-542-3p 417 437 AAGUCAAUAGUUAGACA-GUGU- ||||| | |||| |||| CUCAGUG--CUG-CUGUCCACAU Usp14; rCG_41276 rno-miR-92 418 457 -GUC-CGGCCC----UGU------------UCACGUUAU ||| ||:| ||| :||||||| UCAGUGCUGCUGUCCACAUCCCAUCAACUGGGUGCAAUC Usp14; rCG_41276 rno-miR-98 151 177 -UUGUU-AUGUUGA---AUGAUGGAGU :|:|| |||: |:|||||| AGAUAAUUACGUUUGGGUGCUACCUA- Usp14; rCG_41276 rno-let-7b 155 177 UUGGUGU-GUUGGAUGAUGGAgu ||::||: : : |:|||||| AATTACGTTTGGGTGCTACCTaa Usp14; rCG_41276 rno-let-7i 149 177 UGUCGUGUU--UG-------AUGAUGGAgu |||| |:|| || |:|||||| ACAG-ATAATTACGTTTGGGTGCTACCTaa Usp14; rCG_41276 rno-miR-1* 26 51 CC-CA-UGUAUUU-C-UUCAUACACg || || |:||||| | : ||||||| GGTGTGATATAAATGTGTGTATGTGg Usp14; rCG_41276 rno-miR-103 406 428 AGUAUCGGGACAU---GUUACGACGA |||| | |||| ||:||||||| TCAT---CGTGTAACTCAGTGCTGCT Usp14; rCG_41276 rno-miR-107 401 428 ACUAUCG--GGACAU---GUUACGACGA || | | | |||| ||:||||||| TGCTCTCATCGTGTAACTCAGTGCTGCT Usp14; rCG_41276 rno-miR-124a 330 362 accGUAAGU----GGC--GC-----ACGGAAUu |:|||| |:| || ||||||| cacCGTTCAGTAGCTGCCCGTCCTTTGCCTTAt Usp14; rCG_41276 rno-miR-15b 412 429 ACAUUUGGUACUACACGACGAu ||||| :|| |||||||| TGTAACTCA----GTGCTGCTg Usp14; rCG_41276 rno-miR-15b 386 405 ACAUUUGGUACUACACGACGAu || ||| |||| |||:|||| TGGAAA--ATGAAGTGTTGCTc Usp14; rCG_41276 rno-miR-16 410 429 GCGGUUAUAAAUGCACGACGAu ||: :|| | |||||||| CGT--GTAACTCAGTGCTGCTg Usp14; rCG_41276 rno-miR-187 183 201 gCCGACGUUGUGUUCUGUgcu ||: || :|||||||| aGGTAGC--TACAAGACAttc Usp14; rCG_41276 rno-miR-189 322 348 ugACUAUAGU--CGAGUCAUC--CGug | |||||| |:||||||| || gtTAATATCACCGTTCAGTAGCTGCcc Usp14; rCG_41276 rno-miR-195 409 429 cgguuAUAAAGACACGACGAu || || |||||||| tcgtgTAACTCAGTGCTGCTg Usp14; rCG_41276 rno-miR-196b 156 176 gguUGUUGUCCUUUGAUGGAU ||: : ||: :||||||| attACGTTTGGGTGCTACCTA Usp14; rCG_41276 rno-miR-205 376 399 gucugaggCCACC--UUACUUCcu ||||| ||||||| tcctaggaGGTGGAAAATGAAGtg Usp14; rCG_41276 rno-miR-212 463 480 cCGGCACUGACCUCUGACAAu |:| |||| ||||||| tGTCCAGACT---GACTGTTg Usp14; rCG_41276 rno-miR-223 456 476 cccCAUAAACUGUUUGACUGu ||||| ||:|||||| caaGTATTGTCCAGACTGACt Usp14; rCG_41276 rno-miR-27a 110 131 cGCCUUGAAUCGGUG-ACACuu | |||| |||||| |||| aCAGAACCAAGCCACTTGTGta Usp14; rCG_41276 rno-miR-27b 110 131 cGUCUUGAAUCGGUG-ACACuu |||||| |||||| |||| aCAGAACCAAGCCACTTGTGta Usp14; rCG_41276 rno-miR-298 335 358 ccuUC-UUGUCGGG-AGGAGACGG || |:| |||| ||||:|||| ttcAGTAGCTGCCCGTCCTTTGCC Usp14; rCG_41276 rno-miR-300 301 321 cuucuCUCGAACGGGAACGUAu | | |||::||||||| cctatGTG-TTGTTCTTGCATg Usp14; rCG_41276 rno-miR-30a-3p 448 477 CGACGUUUGU-------AGG-CUGACUuuc | ||||| || ||| |||||| GGTGCAATCAAGTATTGTCCAGACTGActg Usp14; rCG_41276 rno-miR-31 337 359 GUCGAU--ACGGUCGUAG--AACGGA ||| || |||| |:|| |||||| CAG-TAGCTGCC--CGTCCTTTGCCT Usp14; rCG_41276 rno-miR-322 476 496 ACAACG-UCGCGAAGUACaaa |||||| :|| :|||||| TGTTGCTGGCCTTTCATGact Usp14; rCG_41276 rno-miR-326 444 472 UGACCUCC-----UUC---CCGGGUCUcc |||||: | ||| |:||||| ACTGGGTGCAATCAAGTATTGTCCAGAct Usp14; rCG_41276 rno-miR-33 409 426 guuACGUUGAUGUUACGug ||:|||| ||:||| tcgTGTAACT-CAGTGCtg Usp14; rCG_41276 rno-miR-335 298 318 UGUAAAAAGCAAUAACGAGAACu ||| | | | |:|||:||||| ACACCTAT-G-TGTTGTTCTTGc Usp14; rCG_41276 rno-miR-338 463 485 aguuGUUUUAGUGACUACGACCu ||:| | |||| |||||| tgtcCAGACTGACTGTTGCTGGc Usp14; rCG_41276 rno-miR-342 22 47 cugcCCACGCUAAA--GACACACucu ||||:||| | |||||| cctaGGTGTGATATAAATGTGTGtat Usp14; rCG_41276 rno-miR-34b 5 25 GUU-AGUCGAUUAAUGUGACGGAU ||| |:||||| ||| |||||| CAATTTAGCTATTTA---TGCCTA Usp14; rCG_41276 rno-miR-377 12 33 gguuuucaACGGAAACACACUA ||||| ||||||| gctatttaTGCCTAGGTGTGAT Usp14; rCG_41276 rno-miR-382* 304 324 UUCACAACAGGCACUUACUAA | |||||||:| || |||:|| ATGTGTTGTTCTTGCATGGTT Usp14; rCG_41276 rno-miR-424 410 429 agguuUUGUACUUAACGACGAC ||| | |: |||||||| cgtgtAAC-TCAG-TGCTGCTG Usp14; rCG_41276 rno-miR-424 465 483 AGGUUUUGUACUUAACGACGAC ||| |:|| || | ||:||||| TCC-AGAC-TG-ACTGTTGCTG Usp14; rCG_41276 rno-miR-431 174 198 acgUAC--UGCCG--GACGUUCUGU ||| | ||: || ||||||| ctaATGTAAAGGTAGCTACAAGACA Usp14; rCG_41276 rno-miR-433 472 495 ugUGGCUCC--UCGGGUAGUACUa ||:| | :|||: |||||| tgACTGTTGCTGGCCTTTCATGAc Usp14; rCG_41276 rno-miR-497 411 429 auguUUGGUGUCACACGACGAC |||: || ||||||||| gtgtAACT-CA--GTGCTGCTG Usp14; rCG_41276 rno-miR-503 467 483 GUCAUGACAAGGGCGACGAu ||| |||| |:|:|||| CAG-ACTG--ACTGTTGCTg Usp14; rCG_41276 rno-miR-540 466 487 GGUCCUAGCUG---GAGACUGGA ||| || :||| : |||:||| CCA-GACTGACTGTTGCTGGCCT Usp14; rCG_41276 rno-miR-541 234 259 acACUGGUUGUA-GU--CUUAGGGAA ||:|::| || || ||||||| ctTGGCTGAAATCCATTTTATCCCTT Usp14; rCG_41276 rno-miR-542-3p 408 435 aAGU-CAAU-AGUUA----GACA-GUGU ||: || | |||:| |||| |||| aTCGTGTAACTCAGTGCTGCTGTCCACA Usp14; rCG_41276 rno-miR-98 152 177 uUGUU-AUGUUGA---AUGAUGGAgu |:|| |||: :| |:|||||| gATAATTACGTTTGGGTGCTACCTaa Usp14; rCG_41276 rno-miR-1* 44 51 -----------------CC-CA-UGUAUUU-CUU-CAUACACG || || |:||||| | ||||||| UUAGCUAUUUAUGCCUAGGUGUGAUAUAAAUGUGUGUAUGUGG Usp14; rCG_41276 rno-miR-124a 355 362 ACCGUA---AGUGGCGC------------------ACGGAAUU |||: ||||||: ||||||| UGGUUAAUAUCACCGUUCAGUAGCUGCCCGUCCUUUGCCUUAU Usp14; rCG_41276 rno-miR-132 473 480 GCUGGU--ACCGACAU-------------------CUGACAAU |:|| ||| || |||||||: CCAUCAACUGGGUGCAAUCAAGUAUUGUCCAGACUGACUGUUGC Usp14; rCG_41276 rno-miR-15b 422 429 -------------------------ACAUUUGGUACUACACGACGAU ||||| || ||||||||: GGAAAAUGAAGUGUUGCUCUCAUCGUGUAACUCA----GUGCUGCUGU Usp14; rCG_41276 rno-miR-16 422 429 -----------------------GCGGUUAUAAAUGCACGACGAU ||: :|| ||||||||: GGAAAAUGAAGUGUUGCUCUCAUCGU--GUAACUCAGUGCUGCUGU Usp14; rCG_41276 rno-miR-195 422 429 CGGU----------------------UAUAAAGACACGACGAU :|| || ||||||||: GGAAAAUGAAGUGUUGCUCUCAUCGUGUAACUCAGUGCUGCUGU Usp14; rCG_41276 rno-miR-212 473 480 C-------------------------CGGCACUGACCUCUGACAAU |:| |||| |||||||: CCAUCAACUGGGUGCAAUCAAGUAUUGUCCAGACU---GACUGUUGC Usp14; rCG_41276 rno-miR-25 449 456 ----AGUC-UGGCUCUG----------------UUCACGUUAC |||| :|:| ::||||||| UAACUCAGUGCUGCUGUCCACAUCCCAUCAACUGGGUGCAAUC Usp14; rCG_41276 rno-miR-300 314 321 CUUCUCUCG---------------------AACGGGAACGUAU |||::|||||||: UAGCAAUGAUGUUUAUUGCACACCUAUGUGUUGUUCUUGCAUGG Usp14; rCG_41276 rno-miR-32 449 456 C---------------------------GUUGAAUCAUUACACGUUAU ||||| ||||||| UAACUCAGUGCUGCUGUCCACAUCCCAUCAACUGG-----GUGCAAUC Usp14; rCG_41276 rno-miR-424 422 429 -----------------AG-GUUUUGUACUUA-----ACGACGAC || || |:|| |||||||| GGAAAAUGAAGUGUUGCUCUCAU--CGUGUAACUCAGUGCUGCUGU Usp14; rCG_41276 rno-miR-497 422 429 --------------AUGUUUGGUGUCA--------CACGACGAC |:| :||: || ||||||||| GGAAAAUGAAGUGUUGCUC-UCAUCGUGUAACUCAGUGCUGCUGU Usp14; rCG_41276 rno-miR-92 449 456 -----GUC-CGGCCCUG----------------UUCACGUUAU ||| ||:| ::||||||| UAACUCAGUGCUGCUGUCCACAUCCCAUCAACUGGGUGCAAUC

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Usp14 RAID00010840 rno-miR-1-5p miRNA MIMAT0003162 Usp14 mRNA 291796 Prediction 0.1828 Usp14 RAID00168210 rno-miR-363-3p miRNA MIMAT0003210 Usp14 mRNA 291796 Prediction 0.1828 Usp14 RAID00206769 rno-miR-132-3p miRNA MIMAT0000838 Usp14 mRNA 291796 Prediction 0.2202 Usp14 RAID00275412 rno-miR-15a-5p miRNA MIMAT0035728 Usp14 mRNA 291796 Prediction 0.1828 Usp14 RAID00327880 rno-miR-92b-3p miRNA MIMAT0005340 Usp14 mRNA 291796 Prediction 0.1828 Usp14 RAID00348871 rno-miR-296-3p miRNA MIMAT0004742 Usp14 mRNA 291796 Prediction 0.1828 Usp14 RAID00426883 rno-miR-31a-5p miRNA MIMAT0000810 Usp14 mRNA 291796 Prediction 0.1828 Usp14 RAID00533640 rno-miR-539-5p miRNA MIMAT0003176 Usp14 mRNA 291796 Prediction 0.1828 Usp14 RAID00624885 rno-miR-196c-5p miRNA MIMAT0005303 Usp14 mRNA 291796 Prediction 0.1828 Usp14 RAID00678266 rno-miR-130a-3p miRNA MIMAT0000836 Usp14 mRNA 291796 Prediction 0.1828 Usp14 RAID00769094 rno-miR-495 miRNA MIMAT0005320 Usp14 mRNA 291796 Prediction 0.1828 Usp14 RAID00869584 rno-miR-758-3p miRNA MIMAT0005335 Usp14 mRNA 291796 Prediction 0.1828 Usp14 RAID00877246 rno-miR-322-5p miRNA MIMAT0001619 Usp14 mRNA 291796 Prediction 0.2202 Usp14 RAID01021594 rno-miR-23b-3p miRNA MIMAT0000793 Usp14 mRNA 291796 Prediction 0.1828 Usp14 RAID01445786 rno-miR-212-3p miRNA MIMAT0000883 Usp14 mRNA 291796 Prediction 0.2202 Usp14 RAID01482871 rno-miR-19a-3p miRNA MIMAT0000789 Usp14 mRNA 291796 Prediction 0.1828 Usp14 RAID01497269 rno-miR-16-5p miRNA MIMAT0000785 Usp14 mRNA 291796 Prediction 0.2202 Usp14 RAID01715836 rno-miR-301a-3p miRNA MIMAT0000552 Usp14 mRNA 291796 Prediction 0.1828 Usp14 RAID01722804 rno-miR-29b-3p miRNA MIMAT0000801 Usp14 mRNA 291796 Prediction 0.1828 Usp14 RAID01723785 rno-miR-124-3p miRNA MIMAT0000828 Usp14 mRNA 291796 Prediction 0.2202 Usp14 RAID01790738 rno-miR-196a-5p miRNA MIMAT0000871 Usp14 mRNA 291796 Prediction 0.1828 Usp14 RAID01841593 rno-miR-15b-5p miRNA MIMAT0000784 Usp14 mRNA 291796 Prediction 0.2202 Usp14 RAID01883016 rno-miR-32-5p miRNA MIMAT0000811 Usp14 mRNA 291796 Prediction 0.1828 Usp14 RAID02067791 rno-miR-29c-3p miRNA MIMAT0000803 Usp14 mRNA 291796 Prediction 0.1828 Usp14 RAID02142495 rno-miR-196b-5p miRNA MIMAT0001082 Usp14 mRNA 291796 Prediction 0.1828 Usp14 RAID02266887 rno-miR-497-5p miRNA MIMAT0003383 Usp14 mRNA 291796 Prediction 0.2202 Usp14 RAID02640292 rno-miR-137-3p miRNA MIMAT0000843 Usp14 mRNA 291796 Prediction 0.1828 Usp14 RAID02685166 rno-miR-379-5p miRNA MIMAT0003192 Usp14 mRNA 291796 Prediction 0.1828 Usp14 RAID02688571 rno-miR-6216 miRNA MIMAT0024856 Usp14 mRNA 291796 Prediction 0.1828 Usp14 RAID02698615 rno-miR-194-5p miRNA MIMAT0000869 Usp14 mRNA 291796 Prediction 0.1828 Usp14 RAID02720425 rno-miR-32-3p miRNA MIMAT0017103 Usp14 mRNA 291796 Prediction 0.1828 Usp14 RAID02759912 rno-miR-488-3p miRNA MIMAT0005341 Usp14 mRNA 291796 Prediction 0.1828 Usp14 RAID02783137 rno-miR-23a-3p miRNA MIMAT0000792 Usp14 mRNA 291796 Prediction 0.1828 Usp14 RAID02831058 rno-miR-301b-3p miRNA MIMAT0005304 Usp14 mRNA 291796 Prediction 0.1828 Usp14 RAID02843819 rno-miR-674-5p miRNA MIMAT0005329 Usp14 mRNA 291796 Prediction 0.1828 Usp14 RAID02854691 rno-miR-6315 miRNA MIMAT0025050 Usp14 mRNA 291796 Prediction 0.1828 Usp14 RAID03027767 rno-miR-130b-3p miRNA MIMAT0000837 Usp14 mRNA 291796 Prediction 0.1828 Usp14 RAID03215005 rno-miR-431 miRNA MIMAT0001626 Usp14 mRNA 291796 Prediction 0.1828 Usp14 RAID03390314 rno-miR-186-5p miRNA MIMAT0000863 Usp14 mRNA 291796 Prediction 0.2202 Usp14 RAID03586312 rno-miR-29a-3p miRNA MIMAT0000802 Usp14 mRNA 291796 Prediction 0.1828 Usp14 RAID03682937 rno-miR-329-3p miRNA MIMAT0000566 Usp14 mRNA 291796 Prediction 0.1828 Usp14 RAID03695916 rno-miR-19b-3p miRNA MIMAT0000788 Usp14 mRNA 291796 Prediction 0.1828 Usp14 RAID03740758 rno-miR-3548 miRNA MIMAT0017806 Usp14 mRNA 291796 Prediction 0.1828 Usp14 RAID03750691 rno-miR-206-3p miRNA MIMAT0000879 Usp14 mRNA 291796 Prediction 0.1828 Usp14 RAID03763740 rno-miR-377-3p miRNA MIMAT0003123 Usp14 mRNA 291796 Prediction 0.1828 Usp14 RAID03793703 rno-miR-92a-3p miRNA MIMAT0000816 Usp14 mRNA 291796 Prediction 0.1828 Usp14 RAID03807044 rno-miR-25-3p miRNA MIMAT0000795 Usp14 mRNA 291796 Prediction 0.1828 Usp14 RAID03866885 rno-miR-340-5p miRNA MIMAT0004650 Usp14 mRNA 291796 Prediction 0.1828 Usp14 RAID03960972 rno-miR-195-5p miRNA MIMAT0000870 Usp14 mRNA 291796 Prediction 0.2202 Usp14 RAID04056292 rno-miR-1-3p miRNA MIMAT0003125 Usp14 mRNA 291796 Prediction 0.1828