DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000547 rno-miR-322* 81801 Stc1 acaacgucgcgaAGUACAAa ||||||| cgaauaugaaugUCAUGUUu 2 9 475 494 [rn4:15:49576570-49576589:+] 0.6808 140 7 -9.60 -0.5596 MIMAT0000574 rno-miR-140* 81801 Stc1 ggcacCAAGAUGGGACACCau | |||| |||||| cuuaaGGUCUA-ACUGUGGaa 3 17 712 731 [rn4:15:49576807-49576826:+] 0.7728 130 0 -17.66 -0.4026 MIMAT0000577 rno-miR-337 81801 Stc1 uuuCCGUAGUAUAUCCUCGACUu || || ||| | |||||| uguGGAAU-AUA-AAUAGCUGAa 2 21 725 745 [rn4:15:49576820-49576840:+] 0.7728 124 6 -13.59 -0.4138 MIMAT0004645 rno-miR-148b-5p 81801 Stc1 ggACUCACAUAUUGUCUUGAAg | | | | | |||||||| uuUAACUCAACAUCAGAACUUa 2 21 941 962 [rn4:15:49577036-49577057:+] 0.6528 152 7 -10.50 -0.9556 MIMAT0004646 rno-miR-338* 81801 Stc1 gugaguCGUGGUCCUAUAACAa | | ::||||||||| aaugauGGAAUGGGAUAUUGUu 2 17 1229 1250 [rn4:15:49577324-49577345:+] 0.6528 156 7 -14.10 -0.1002 MIMAT0004646 rno-miR-338* 81801 Stc1 gugagucgugguccuAUAACAa |||||| uaaauagcugaaaacUAUUGUa 2 8 734 755 [rn4:15:49576829-49576850:+] 0.7728 120 6 -7.31 -0.1821 MIMAT0000603 rno-miR-20a* 81801 Stc1 acaUUCACG-AGCAUUACGUca || | : |: |||||| aacAACUUUAUUUAAAUGCAug 3 19 392 413 [rn4:15:49576487-49576508:+] 0.6600 121 0 -5.58 -0.1305 MIMAT0000614 rno-miR-151* 81801 Stc1 ggAGUU-CCUCGGAGUCAGAUc |:|| ||| ||||||| gcUUAACAGAG---CAGUCUAu 2 20 781 799 [rn4:15:49576876-49576894:+] 0.7728 142 7 -14.29 -0.9810 MIMAT0004708 rno-miR-9* 81801 Stc1 ugAAAGCCAAUAG-AUCGAAAUa |||:| || | |||||||| agUUUUG--UACCUUAGCUUUAu 2 21 824 844 [rn4:15:49576919-49576939:+] 0.7728 156 7 -12.89 -1.2659 MIMAT0004708 rno-miR-9* 81801 Stc1 ugaaagccaauagaUCGAAAUa ||||||| cuguaacugcucagAGCUUUAa 2 9 655 676 [rn4:15:49576750-49576771:+] 0.7728 140 7 -6.97 -1.1448 MIMAT0003152 rno-miR-22* 81801 Stc1 auuucGAAC---GGUGACUUCUUGa |||| |:| |||| ||| aucuuCUUGCAUCUAAUGAAAAACa 2 18 609 633 [rn4:15:49576704-49576728:+] 0.7728 124 0 -10.58 -0.1089 MIMAT0005445 rno-miR-29b-1* 81801 Stc1 uuuagAUUUGGUGGUAUACUUu |::|| | ||||||| ggccaUGGACGA--AUAUGAAu 2 18 466 485 [rn4:15:49576561-49576580:+] 0.7262 146 7 -8.99 -0.6637 MIMAT0004719 rno-miR-30c-1* 81801 Stc1 ccUCA-UUUGUUGGGAGAGGGUc :|| |:|:| | ||||||| caGGUGAGAUAUCAAUCUCCCAg 2 21 1013 1035 [rn4:15:49577108-49577130:+] 0.6528 155 7 -24.17 -0.3702 MIMAT0004720 rno-miR-30e* 81801 Stc1 cgACAUU-UGUAGGCUGACUUUc || || |:| : :|||||| ugUGGAAUAUAAAUAGCUGAAAa 2 21 725 747 [rn4:15:49576820-49576842:+] 0.7728 135 6 -9.88 -0.3385 MIMAT0004721 rno-miR-30b-3p 81801 Stc1 cugcauuugUAGGUGUAGGGUc ||| |:|||||| gcuuccaugAUCAAUAUCCCAa 2 14 148 169 [rn4:15:49576243-49576264:+] 0.6368 141 6 -14.34 -0.2052 MIMAT0004722 rno-miR-30d* 81801 Stc1 cgUCGUUUGUAGACUGACUUUc :| | |:| | :|||||| guGGAAUAUAAAUAGCUGAAAa 2 21 726 747 [rn4:15:49576821-49576842:+] 0.7728 136 6 -8.48 -0.3385 MIMAT0000809 rno-miR-30a* 81801 Stc1 cgACGUU-UGUAGGCUGACUUUc || || |:| : :|||||| ugUGGAAUAUAAAUAGCUGAAAa 2 21 725 747 [rn4:15:49576820-49576842:+] 0.7728 135 6 -9.17 -0.3385 MIMAT0005442 rno-miR-30c-2* 81801 Stc1 ucUCA-UUUGUCGGAAGAGGGUc :|| |:|:| | ||||||| caGGUGAGAUAUCAAUCUCCCAg 2 21 1013 1035 [rn4:15:49577108-49577130:+] 0.6528 155 7 -22.20 -0.3731 MIMAT0004724 rno-miR-99a* 81801 Stc1 gucuggguaucuuugCUCGAAc |||||| uacuguaacugcucaGAGCUUu 2 8 653 674 [rn4:15:49576748-49576769:+] 0.7728 120 6 -11.44 -0.1180 MIMAT0004725 rno-miR-99b* 81801 Stc1 gccugggugucugugCUCGAAc |||||| uacuguaacugcucaGAGCUUu 2 8 653 674 [rn4:15:49576748-49576769:+] 0.7728 120 6 -10.49 -0.1157 MIMAT0004726 rno-miR-101a* 81801 Stc1 cgUAGUCGUGACACUAUUGAcu | |||: || | |||||| agAGCAGU-CUAUAAUAACUuu 3 21 788 808 [rn4:15:49576883-49576903:+] 0.7728 138 0 -9.15 -0.1192 MIMAT0004726 rno-miR-101a* 81801 Stc1 cguagucgugacacUAUUGACu |||:||| acuguggaauauaaAUAGCUGa 2 9 723 744 [rn4:15:49576818-49576839:+] 0.7728 124 0 -15.15 -0.1318 MIMAT0000847 rno-miR-142-5p 81801 Stc1 ucaUCACGAAAGA-UGAAAUAc ||| : | | ||||||| agcAGUCUAUAAUAACUUUAUu 2 19 790 811 [rn4:15:49576885-49576906:+] 0.7728 145 7 -6.76 -1.2254 MIMAT0000847 rno-miR-142-5p 81801 Stc1 ucaucacgaaaGAUGAAAUAc | ||||||| ccaauacaaaaCAACUUUAUu 2 11 383 403 [rn4:15:49576478-49576498:+] 0.6600 142 7 -5.61 -1.1425 MIMAT0000847 rno-miR-142-5p 81801 Stc1 ucAUCACGAAAGAUGAAAUAc | || | || :|||||| uuUUGUACCUU-AGCUUUAUu 2 20 826 845 [rn4:15:49576921-49576940:+] 0.7728 133 6 -5.61 -0.1948 MIMAT0000847 rno-miR-142-5p 81801 Stc1 ucaucacgaaagauGAAAUAc |||||| caaaaagcuaacauCUUUAUg 2 8 632 652 [rn4:15:49576727-49576747:+] 0.7728 120 6 -10.64 -0.1456 MIMAT0005446 rno-miR-219-2-3p 81801 Stc1 ugUCUACA-GGUCGGUGUUAAga | | || :| : |||||| uuAAAAGUAUCUUUAACAAUUgu 3 21 673 695 [rn4:15:49576768-49576790:+] 0.7728 123 0 -6.36 -0.2118 MIMAT0000893 rno-miR-290 81801 Stc1 uuuUUCACGGGG---GUAUCAAACUc :||||: |: | |:|||||| uuuGAGUGUACUGUGCCUGGUUUGAu 2 21 64 89 [rn4:15:49576159-49576184:+] 0.6368 139 6 -14.83 -0.1003 MIMAT0000902 rno-miR-300-3p 81801 Stc1 cuUCUCUCGAACGGGAACGUAu || ||| | ::||||||| ugAGCCAGCAUCUUCUUGCAUc 2 21 600 621 [rn4:15:49576695-49576716:+] 0.7728 160 7 -14.98 -1.1599 MIMAT0000902 rno-miR-300-3p 81801 Stc1 cuucucucgaacgggAACGUAu |||||| ucuauaauaacuuuaUUGCAUa 2 8 795 816 [rn4:15:49576890-49576911:+] 0.7728 120 6 -9.08 -0.4614 MIMAT0003113 rno-miR-489 81801 Stc1 cgaCGGUAUAUACACUACAGUAa | |: ||||| ||||||| augGACGAAUAUG-AAUGUCAUg 2 21 470 491 [rn4:15:49576565-49576586:+] 0.7262 158 7 -14.22 -0.9434 MIMAT0003116 rno-miR-501 81801 Stc1 aaaguggGUCCCU-GUUUC-CUAa |||| | ||||| ||| ggaauuaCAGGAAUCAAAGAGAUc 2 16 1103 1126 [rn4:15:49577198-49577221:+] 0.6528 122 0 -14.23 -0.5588 MIMAT0003175 rno-miR-543* 81801 Stc1 ucuucacguggcGCUUACAaa :|||||| cauggacgaauaUGAAUGUca 3 10 469 489 [rn4:15:49576564-49576584:+] 0.7262 121 0 -8.57 -0.1191 MIMAT0004791 rno-miR-379* 81801 Stc1 caaucaccugguacaAUGUAUc |||||| aaaacuauuguacugUACAUAa 2 8 744 765 [rn4:15:49576839-49576860:+] 0.7728 120 6 -6.50 -0.2447 MIMAT0003195 rno-miR-376b-5p 81801 Stc1 auuGGUAUCUUCCUUAUAGGug |||| :| ||||||| cuuCCAU--GAUCAAUAUCCca 3 20 149 168 [rn4:15:49576244-49576263:+] 0.6368 132 0 -14.67 -0.1840 MIMAT0003382 rno-miR-664 81801 Stc1 auccgaccccucauUUACUUau |||||| aucuucuugcaucuAAUGAAaa 3 9 609 630 [rn4:15:49576704-49576725:+] 0.7728 120 0 -2.72 -0.1925 MIMAT0005280 rno-miR-743b 81801 Stc1 agAUAAGUCAUAC-CACAGAAag ||||:| ||| |||||| uuUAUUUA-AAUGCAUGUCUUaa 3 21 398 419 [rn4:15:49576493-49576514:+] 0.7262 137 0 -10.05 -0.2395 MIMAT0005280 rno-miR-743b 81801 Stc1 agauAAGUCAUACCACAGAAag || | || |||||| aucuUUAACAAU--UGUCUUaa 3 19 681 700 [rn4:15:49576776-49576795:+] 0.7728 123 0 -4.63 -0.3380 MIMAT0005286 rno-miR-878 81801 Stc1 agaugGGUCAUAC-CACAGUACg | | |||| ||||||| auggaCGAAUAUGAAUGUCAUGu 2 18 470 492 [rn4:15:49576565-49576587:+] 0.7262 152 7 -13.26 -1.0954 MIMAT0005315 rno-miR-434 81801 Stc1 ucCUCAGCUCACUACCA-AGUUu ||||| | ||||| |||| auGAGUC---UUAUGGUCUCAAu 2 21 511 530 [rn4:15:49576606-49576625:+] 0.6353 124 0 -13.88 -0.4800 MIMAT0005317 rno-miR-463 81801 Stc1 gaUGGGUU-UAACCGCAGAUAgu :|::|| | | |||||| cuGCUUAACAGAGCAGUCUAUaa 3 21 779 801 [rn4:15:49576874-49576896:+] 0.7728 127 0 -15.12 -0.1560 MIMAT0005337 rno-miR-760-3p 81801 Stc1 aggggUGUCUGGGUCUCGGc || | |:||||||: cuguaACUG-CUCAGAGCUu 2 16 655 673 [rn4:15:49576750-49576768:+] 0.7728 133 0 -15.35 -0.1629 MIMAT0012831 rno-miR-544 81801 Stc1 cucGAACGAUUUUU-ACGU-CUUa ||| :|||| |||| ||| cccCUUAAAGAAAACUGCAUGAAa 2 20 120 143 [rn4:15:49576215-49576238:+] 0.6368 122 0 -7.35 -1.0935 MIMAT0012833 rno-miR-582 81801 Stc1 ucauugaccAACUUGUUGACAu || |||||:||| aaaaguaucUUUAACAAUUGUc 2 14 675 696 [rn4:15:49576770-49576791:+] 0.7728 141 0 -11.51 -0.1137 MIMAT0012835 rno-miR-615 81801 Stc1 cuaGGCUCGUGGCC--CCUGGGGg | |: :|:| | ||||||| caaCAGGUUAUCUGAAGGACCCCa 2 20 991 1014 [rn4:15:49577086-49577109:+] 0.6528 146 7 -23.58 -1.0752 MIMAT0012838 rno-miR-653 81801 Stc1 gucaUCUCUUACAAAGUUGUg | || || ||:|||| uuuaAAAGUAU-CUUUAACAa 2 18 672 691 [rn4:15:49576767-49576786:+] 0.7728 131 0 -4.63 -0.1061 MIMAT0012842 rno-miR-875 81801 Stc1 guggacuauUUUGACUCCAUAu |:: ||||||| -------gcAGGGAGAGGUAUu 2 14 1 15 [rn4:15:49576096-49576110:+] 0.6368 141 7 -10.25 -0.4155 MIMAT0012845 rno-miR-935 81801 Stc1 cgccaucgccuucGCCAUUGACc | ||||||| acaucuuuauguaCUGUAACUGc 2 11 642 664 [rn4:15:49576737-49576759:+] 0.7728 142 7 -9.25 -1.0323 MIMAT0012845 rno-miR-935 81801 Stc1 cgccaucgccuucgcCAUUGACc ||||||| acacaaaacauucauGUAACUGc 2 9 302 324 [rn4:15:49576397-49576419:+] 0.5937 140 7 -7.79 -0.5723 MIMAT0012848 rno-miR-294 81801 Stc1 ucuaucccggaggUAAAACUc ||||||| guucuccaaccagAUUUUGAg 2 9 583 603 [rn4:15:49576678-49576698:+] 0.7728 140 7 -14.18 -0.2363 MIMAT0012851 rno-miR-547 81801 Stc1 gaguGAAUUUCUUCAUGGuu :|| ||| |||||| uuuuUUUUAAGUAGUACCua 3 17 90 109 [rn4:15:49576185-49576204:+] 0.6368 140 0 -11.25 -0.1642 MIMAT0012856 rno-miR-759 81801 Stc1 caguuUUAACAAACGUGAGACg ||| | |||||||| ccaucAAUGCCUGGCACUCUGg 2 18 1205 1226 [rn4:15:49577300-49577321:+] 0.6528 153 7 -16.47 -0.2324 MIMAT0012860 rno-miR-496 81801 Stc1 cucuaaccgGUACA----UUAUGAGu ||||| |||:||| auuuaaaugCAUGUCUUAAAUGCUCa 2 14 401 426 [rn4:15:49576496-49576521:+] 0.7262 128 0 -13.90 -0.1304 MIMAT0000560 rno-miR-326 81801 Stc1 ugaccuccuucccGGGUCUCc ||||||| cagcccagcucaaCCCAGAGg 2 9 1033 1053 [rn4:15:49577128-49577148:+] 0.6528 140 7 -18.62 -0.4523 MIMAT0000560 rno-miR-326 81801 Stc1 ugaccuccuucccGGGUCUCc :|||||| acuguacauaaauUCCAGAGg 2 9 755 775 [rn4:15:49576850-49576870:+] 0.7728 124 6 -18.69 -0.1325 MIMAT0004641 rno-miR-330 81801 Stc1 cggauucUGUGUCCGGGUCUCu :| || ||||||| cagcccaGCUCA-ACCCAGAGg 2 16 1033 1053 [rn4:15:49577128-49577148:+] 0.6528 141 7 -20.86 -0.4523 MIMAT0004641 rno-miR-330 81801 Stc1 cggauucUGUG-UCCGGGUCUCu |||: | :|||||| guacuguACAUAAAUUCCAGAGg 2 16 753 775 [rn4:15:49576848-49576870:+] 0.7728 130 6 -19.97 -0.1312 MIMAT0000575 rno-miR-335 81801 Stc1 uguaaaaaGCAAUAACGA-GAACu |||| |||| |||| gauauccgCGUUCAUGCUCCUUGu 2 16 884 907 [rn4:15:49576979-49577002:+] 0.7728 123 0 -14.85 -0.5613 MIMAT0004650 rno-miR-340-5p 81801 Stc1 uuaGUCAG--AGUAACGAAAUAuu ||||| | || |||||| gagCAGUCUAUAAUAACUUUAUug 3 20 789 812 [rn4:15:49576884-49576907:+] 0.7728 138 0 -14.14 -0.2244 MIMAT0004650 rno-miR-340-5p 81801 Stc1 uuagucagaguaacGAAAUAuu |||||| ccaauacaaaacaaCUUUAUuu 3 9 383 404 [rn4:15:49576478-49576499:+] 0.6600 120 0 -4.22 -0.1067 MIMAT0000600 rno-miR-129 81801 Stc1 cguucgggucuggcGUUUUUc |||||| caucuaaugaaaaaCAAAAAg 2 8 618 638 [rn4:15:49576713-49576733:+] 0.7728 120 6 -8.37 -0.1988 MIMAT0000615 rno-miR-101b 81801 Stc1 aaGUCGAUAGUGUCAUGACAu || || | | ||||||| acCAACUUUGAGUGUACUGUg 2 20 58 78 [rn4:15:49576153-49576173:+] 0.6368 155 7 -12.74 -0.6966 MIMAT0000615 rno-miR-101b 81801 Stc1 aaGUCGAUAGUGUCAUGACAu || || |:|: ||||||| aaCAUCU-UUAU-GUACUGUa 2 20 641 659 [rn4:15:49576736-49576754:+] 0.7728 151 7 -15.25 -1.2963 MIMAT0000615 rno-miR-101b 81801 Stc1 aagucgaUAGUGUCAUGACAu | :|: ||||||| gcugaaaACUAUUGUACUGUa 2 15 740 760 [rn4:15:49576835-49576855:+] 0.7728 146 7 -14.90 -1.3083 MIMAT0000791 rno-miR-22 81801 Stc1 ugucaagaaguuGACCGUCGAa ||||||||| gccaaaguagucCUGGCAGCUg 2 11 1392 1413 [rn4:15:49577487-49577508:+] 0.6528 150 7 -18.21 -0.2000 MIMAT0000796 rno-miR-26a 81801 Stc1 ucGGAUAGGACCU--A-AUGAACUu |:|| |||: | ||||||| aaCUUAAGAUGGGCCUAUACUUGAu 2 21 957 981 [rn4:15:49577052-49577076:+] 0.6528 146 7 -15.07 -0.6137 MIMAT0000797 rno-miR-26b 81801 Stc1 uggauaggacuuaAUGAACUu ||||||| uaagaugggccuaUACUUGAu 2 9 961 981 [rn4:15:49577056-49577076:+] 0.6528 140 7 -11.05 -0.6137 MIMAT0000798 rno-miR-27b 81801 Stc1 cgUCUU-GAAU--CGG--UGACACUu |||| |||| |:| ||||||: agAGAAUCUUAAGGUCUAACUGUGGa 2 20 705 730 [rn4:15:49576800-49576825:+] 0.7728 140 0 -17.45 -0.3915 MIMAT0000799 rno-miR-27a 81801 Stc1 cgcCUU-GAAU--CGG--UGACACUu ||| |||| |:| ||||||: agaGAAUCUUAAGGUCUAACUGUGGa 2 19 705 730 [rn4:15:49576800-49576825:+] 0.7728 135 0 -15.68 -0.3915 MIMAT0000804 rno-miR-30c 81801 Stc1 cgacUCUCACA--UCCUACAAAUGu || || | :||:||||||| uaauAGCGUUUUAGGGGUGUUUACa 2 20 32 56 [rn4:15:49576127-49576151:+] 0.6368 158 7 -17.35 -0.3037 MIMAT0000805 rno-miR-30e 81801 Stc1 gaaggucAGUUCCUACAAAUGu |:|:||:||||||| uagcguuUUAGGGGUGUUUACa 2 16 35 56 [rn4:15:49576130-49576151:+] 0.6368 163 7 -21.40 -0.3089 MIMAT0000806 rno-miR-30b-5p 81801 Stc1 ucgacucACAU-CCUACAAAUGu | || ||:||||||| auagcguUUUAGGGGUGUUUACa 2 16 34 56 [rn4:15:49576129-49576151:+] 0.6368 154 7 -19.56 -0.3037 MIMAT0000807 rno-miR-30d 81801 Stc1 gaaggucAGCCCCUACAAAUGu |: |||:||||||| uagcguuUUAGGGGUGUUUACa 2 16 35 56 [rn4:15:49576130-49576151:+] 0.6368 159 7 -20.98 -0.3063 MIMAT0000808 rno-miR-30a 81801 Stc1 gaaggucAGCUCCUACAAAUGu |: :||:||||||| uagcguuUUAGGGGUGUUUACa 2 16 35 56 [rn4:15:49576130-49576151:+] 0.6368 155 7 -18.69 -0.3089 MIMAT0000810 rno-miR-31 81801 Stc1 gucGAUACGGUCGU---AGAACGga :|: ||||||| |||||| auuUUGAGCCAGCAUCUUCUUGCau 3 20 596 620 [rn4:15:49576691-49576715:+] 0.7728 142 0 -21.33 -0.1019 MIMAT0000812 rno-miR-33 81801 Stc1 acGUUACGUUGAUGUUACGUg ||| : |:| |||||| aaCAACUUUAUUUAAAUGCAu 2 20 392 412 [rn4:15:49576487-49576507:+] 0.6600 123 6 -11.97 -0.1098 MIMAT0000812 rno-miR-33 81801 Stc1 acGUUACGUUGAUGUUAC-GUg |||| : ||:||||| || ccCAAUAU-UCUGCAAUGACAg 2 20 165 185 [rn4:15:49576260-49576280:+] 0.6368 121 0 -13.67 -0.5382 MIMAT0000823 rno-miR-101a 81801 Stc1 aaGUCAAUAGUGUCAUGACAu || | | | ||||||| acCAACUUUGAGUGUACUGUg 2 20 58 78 [rn4:15:49576153-49576173:+] 0.6368 147 7 -10.42 -0.7040 MIMAT0000823 rno-miR-101a 81801 Stc1 aagucaaUAGUGUCAUGACAu | :|: ||||||| gcugaaaACUAUUGUACUGUa 2 15 740 760 [rn4:15:49576835-49576855:+] 0.7728 146 7 -11.06 -1.3083 MIMAT0000823 rno-miR-101a 81801 Stc1 aagucaauAGUGUCAUGACAu |:|: ||||||| uaacaucuUUAU-GUACUGUa 2 14 640 659 [rn4:15:49576735-49576754:+] 0.7728 143 7 -13.14 -1.2970 MIMAT0000828 rno-miR-124 81801 Stc1 ccGUAAGUGGCGCA-CGGAAu ||| | || :|| ||||| uuCAUGCUCCUUGUGGCCUUu 2 19 894 914 [rn4:15:49576989-49577009:+] 0.7728 126 0 -16.49 -0.9556 MIMAT0000834 rno-miR-128 81801 Stc1 uuucucuggccaagUGACACu |||||| aaucuuaaggucuaACUGUGg 2 8 709 729 [rn4:15:49576804-49576824:+] 0.7728 120 6 -14.00 -0.2080 MIMAT0000843 rno-miR-137 81801 Stc1 gaugcgCAUAAGAAUUCGUUAUu | |||||| ||||||| augacaGCAUUCUU-AGCAAUAg 2 18 179 200 [rn4:15:49576274-49576295:+] 0.6368 163 7 -16.05 -0.6750 MIMAT0000845 rno-miR-139-5p 81801 Stc1 gaCCUCUGUGCACGUGACAUcu | | || ||:|||||| cuGAAAACUAUUGUACUGUAca 3 21 741 762 [rn4:15:49576836-49576857:+] 0.7728 136 0 -13.20 -0.3048 MIMAT0000845 rno-miR-139-5p 81801 Stc1 gaccucugUGCACG-UGACAUCu | || : |||||:| gaaucuuaAGGUCUAACUGUGGa 2 15 708 730 [rn4:15:49576803-49576825:+] 0.7728 125 0 -13.26 -0.1790 MIMAT0000850 rno-miR-144 81801 Stc1 ucaUGUAGUAG-AUAUGACAu ||||| |: |:|||||| cuaACAUCUUUAUGUACUGUa 2 18 639 659 [rn4:15:49576734-49576754:+] 0.7728 148 6 -17.81 -0.2884 MIMAT0000850 rno-miR-144 81801 Stc1 ucaUGUAGUAGAUAUGACAu | | :|| |:|||||| ugaAAACUAU-UGUACUGUa 2 18 742 760 [rn4:15:49576837-49576855:+] 0.7728 135 6 -12.10 -0.3215 MIMAT0000852 rno-miR-146a 81801 Stc1 uuggguaccUUAAGUCAAGAGu || ::|||||| aauugcucaAACCUGGUUCUCc 2 14 568 589 [rn4:15:49576663-49576684:+] 0.7728 129 6 -10.16 -0.1190 MIMAT0000857 rno-miR-181c 81801 Stc1 ugaGUGGCUGUCCA-ACUUACAa ||: |||: | ||||||| ggcCAUGGACGAAUAUGAAUGUc 2 20 466 488 [rn4:15:49576561-49576583:+] 0.7262 154 7 -15.89 -0.9579 MIMAT0000858 rno-miR-181a 81801 Stc1 ugaGUGGCUGUCGCAACUUACAa ||: |||: ||||||| ggcCAUGGACGAAUAUGAAUGUc 2 21 466 488 [rn4:15:49576561-49576583:+] 0.7262 152 7 -16.28 -0.9579 MIMAT0000859 rno-miR-181b 81801 Stc1 ugGGUGGCUGUCGUUACUUACAa |||: |||: |||||||| ggCCAUGGACGAAUAUGAAUGUc 2 22 466 488 [rn4:15:49576561-49576583:+] 0.7262 165 7 -22.44 -0.9579 MIMAT0000863 rno-miR-186 81801 Stc1 ucggguuuuccucUUAAGAAAc |||||||| cccccucucucucAAUUCUUUu 2 10 254 275 [rn4:15:49576349-49576370:+] 0.5582 145 7 -9.87 -0.5770 MIMAT0000873 rno-miR-200c 81801 Stc1 gguAGUA-AUGGGC-CGUCA-UAAu |||| || |:| |||| ||| cauUCAUGUAACUGCCCAGUCAUUg 2 20 310 334 [rn4:15:49576405-49576429:+] 0.5937 121 0 -11.31 -0.5888 MIMAT0000880 rno-miR-208 81801 Stc1 uguucgaaaaACGAGCAGAAUa ||| :|||||| uuuauuuaaaUGCAUGUCUUAa 2 13 398 419 [rn4:15:49576493-49576514:+] 0.7262 136 6 -11.00 -0.2951 MIMAT0000880 rno-miR-208 81801 Stc1 ugUUCG-A-AAAACG--AGCAGAAUa |||: | ||| | |:|||||| aaAAGUAUCUUUAACAAUUGUCUUAa 2 21 675 700 [rn4:15:49576770-49576795:+] 0.7728 133 6 -10.66 -0.4108 MIMAT0000903 rno-miR-320 81801 Stc1 agcgGGAGAGUUGGGUCGAAAa ::|: :| |::|||||| uuagUUUUGUACCUUAGCUUUa 2 19 822 843 [rn4:15:49576917-49576938:+] 0.7728 138 6 -12.82 -0.3644 MIMAT0000903 rno-miR-320 81801 Stc1 agcgggagaguugggUCGAAAa |||||| acuguaacugcucagAGCUUUa 2 8 654 675 [rn4:15:49576749-49576770:+] 0.7728 120 6 -12.35 -0.2711 MIMAT0003114 rno-miR-383 81801 Stc1 ucGGUGUCAGUGGAAG-ACUAGa :||:: |:: ||| ||||| ugUCAUGUUUGAAUUCUUGAUCu 2 21 485 507 [rn4:15:49576580-49576602:+] 0.6808 120 0 -15.92 -1.0564 MIMAT0003179 rno-miR-542-3p 81801 Stc1 aaagucaaUAGUU-AGACAGUGu | ||: |||||||| uauccugaAACAGCUCUGUCACa 2 15 1072 1094 [rn4:15:49577167-49577189:+] 0.6528 149 7 -17.52 -0.8071 MIMAT0003201 rno-miR-382 81801 Stc1 gcuUAGGUGGUG-CUUGUUGAAg | ||| :|| |||||||| guuAGCCAAUACAAAACAACUUu 2 20 378 400 [rn4:15:49576473-49576495:+] 0.6600 158 7 -15.72 -1.1819 MIMAT0003203 rno-miR-485 81801 Stc1 cuuaaguagugccgGUCGGAGa ||||||| gggagagguauucaCAGCCUCa 2 9 4 25 [rn4:15:49576099-49576120:+] 0.6368 140 7 -15.09 -1.0960 MIMAT0003381 rno-miR-499 81801 Stc1 uuugUAGUGA-CGUUCAGAAUu ||| || ::||||||| cuugAUCUCUAAUGAGUCUUAu 2 18 500 521 [rn4:15:49576595-49576616:+] 0.6353 152 7 -11.10 -0.4290 MIMAT0003381 rno-miR-499 81801 Stc1 uuUGUAGUGACGUUCAGAAUu |: | | |||| |||||| uuAUUUAAAUGCAUGUCUUAa 2 20 399 419 [rn4:15:49576494-49576514:+] 0.7262 135 6 -13.17 -0.2976 MIMAT0003381 rno-miR-499 81801 Stc1 uuuguagugacguuCAGAAUu |||||| uaucuuuaacaauuGUCUUAa 2 8 680 700 [rn4:15:49576775-49576795:+] 0.7728 120 6 -8.94 -0.4139 MIMAT0005299 rno-miR-181d 81801 Stc1 ugGGUGGCUGUUGUUACUUACAa |||: |||:| |||||||| ggCCAUGGACGAAUAUGAAUGUc 2 22 466 488 [rn4:15:49576561-49576583:+] 0.7262 173 7 -23.36 -0.9548 MIMAT0005300 rno-miR-182 81801 Stc1 gccACACUCAAGAUGG--UAACG-GUUu || | |:|||| ||||| ||| uucUGACAUAUUUACCAAAUUGCUCAAa 2 23 551 578 [rn4:15:49576646-49576673:+] 0.7041 125 0 -13.91 -1.0115 MIMAT0005309 rno-miR-384-5p 81801 Stc1 uguaacGGAUCCUUAACAAAUGu ::||||:: ||||||| uagcguUUUAGGGG-UGUUUACa 2 18 35 56 [rn4:15:49576130-49576151:+] 0.6368 155 7 -20.35 -0.2819 MIMAT0005314 rno-miR-425 81801 Stc1 aguugcccucacuagcACAGUAa |||||| cauggacgaauaugaaUGUCAUg 2 8 469 491 [rn4:15:49576564-49576586:+] 0.7262 120 6 -10.51 -0.1023 MIMAT0005316 rno-miR-455 81801 Stc1 gcuacaucaGGUUUCCG-UGUAu |||:|||| |||| cagcucaacCCAGAGGCUACAUu 2 14 1038 1060 [rn4:15:49577133-49577155:+] 0.6528 125 0 -17.64 -0.3542 MIMAT0005339 rno-miR-873 81801 Stc1 uccuCUGAGUGUUCA-AGGACg ||||:| | || ||||| auuuGACUUAGAUGUAUCCUGa 2 18 1058 1079 [rn4:15:49577153-49577174:+] 0.6528 129 0 -16.02 -0.6976 MIMAT0005595 rno-miR-146b 81801 Stc1 ugucggauaccUUAAGUCAAGAGu || ::|||||| caaauugcucaAACCUGGUUCUCc 2 14 566 589 [rn4:15:49576661-49576684:+] 0.7728 129 6 -9.97 -0.1190

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G101200 Stc1 Rattus norvegicus 81801

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Stc1; Stc rno-let-7d 1336 1364 -UGAUACGUUGGA------UGAUGGAGA- :||:| ||:||| ||| ||||| GGCUGUCCAGCCUUAAUAGACU-CCUCUU Stc1; Stc rno-miR-103 1364 1391 AGUAU----CGGGACAUGUUACGACGA ||| |:|||||| ||||| ACAUCUUUUGUCCUGUAACACGCUGCC Stc1; Stc rno-miR-107 1372 1391 ACUAUCGGGACAUGUUACGACGA |:|||||| ||||| ----UGUCCUGUAACACGCUGCC Stc1; Stc rno-miR-10a 1090 1115 -GUGUUUA---AGCCUAGAUGUCCCAU ||||: | ||| :|||||| UCACAGCCAACUGGGAAUUACAGGA-- Stc1; Stc rno-miR-122a 881 905 UGUUUGU-GGUAACAGUGUGAGGU ||:|:| ||: |||::|||| CCAGAUAUCCGCGUUCAUGCUCCU Stc1; Stc rno-miR-125a 992 1021 GUGUCCA----AUUUCCCAGAGUCC-CU- |||||| |:|||| |||| || AACAGGUUAUCUGAAGGACCCCAGGUGAG Stc1; Stc rno-miR-128a 704 731 UUUUCUCUGG-----CCAAG-UGACACU- ||||| ||| ||||||: --CAGAGAAUCUUAAGGUCUAACUGUGGA Stc1; Stc rno-miR-128b 704 731 CUUUCUCUGG-----CCAAG-UGACACU- ||||| ||| ||||||: --CAGAGAAUCUUAAGGUCUAACUGUGGA Stc1; Stc rno-miR-129* 1310 1341 UACGAAAAACCCCAUU----------CCCGAA |||| |||||| ||||| -GGCUUAAGGGGGUAUAAAUAACCCUGGGCUG Stc1; Stc rno-miR-133a 1406 1433 -UGUCGACCAACUUCC-----CCUGGUU :||||||| |||:| GGCAGCUGGACCAUCUCUGUAGGAUCU- Stc1; Stc rno-miR-134 352 376 -GGGAG-----ACCAGUUGGUCAGUGU ||||: |||||| ||||| UCCCUUUAGAAUGGUCACCCAGUA--- Stc1; Stc rno-miR-137 178 201 GAUGCG--CAUAAGAAUUCGUUAU- |:| | |||||| ||||||| -AAUGACAGCAUUCUU-AGCAAUAG Stc1; Stc rno-miR-140* 887 911 ACAGGCACCAAGAU---GGGACACCAU |||| |||| ||:||||| -AUCCGC-GUUCAUGCUCCUUGUGGC- Stc1; Stc rno-miR-144 641 661 GAUCAUGUAGUAG-AUAUGACAU- ||||| |:||||||| ----AACAUCUUUAUGUACUGUAA Stc1; Stc rno-miR-145 1286 1314 UUCCCUA-----AGGACCCUUUUGACCUG- ||| ||||||||| :|||:| -UGGGUCUUUAGUCCUGGGAAC-UUGGGCU Stc1; Stc rno-miR-146 1170 1193 UUGGGUACCUUAA--GUCAAGAGU ||| ||||| |||||||: -CCCCUUGGAAGUGGCAGUUCUUG Stc1; Stc rno-miR-150 1222 1245 GUGACCAUGUU---CCCAACCCUCU |||||| || ||||| -UCUGGUAAAUGAUGGAAUGGGAU- Stc1; Stc rno-miR-151* 1332 1363 AUGAUCUGACA------------CUCGAGGAGCU ||:|:|||| || |||||| -CCUGGGCUGUCCAGCCUUAAUAGA-CUCCUCU- Stc1; Stc rno-miR-15b 447 468 ACAUUUGGUACU---ACACGACGAU ||: ::|||| ||||||| CGUG--UUAUGAAUCUGUGCUGG-- Stc1; Stc rno-miR-18 809 839 AUAGACGUG-AUCU--------ACGUGGAAU- :||||: |||| ||:|||||| --AUUGCAUAUAGAUUUAGUUUUGUACCUUAG Stc1; Stc rno-miR-181b 467 489 GGGUGGCUGUCGUUACUUACAA |||: |||: |||||||| GCCAUGGACGAAUAUGAAUGUC Stc1; Stc rno-miR-181c 462 489 -UGAGUGG---CUGUCCA-ACUUACAA :|| :|| |||: ||||||| UGCUGGCCAUGGACGAAUAUGAAUGUC Stc1; Stc rno-miR-195 457 468 CGGUUAUAAAGACACGACGAU ||||||||| --------AUCUGUGCUGG-- Stc1; Stc rno-miR-199a 1286 1313 CUUGUCCA----UCAGA---CUUGUGACCC- :||| |||| |||| :|||| ---UGGGUCUUUAGUCCUGGGAAC-UUGGGC Stc1; Stc rno-miR-204 1216 1245 UCCGUAU--CC---UACUGUUU--CCCUU |||| || ||||:::| |||| UGGCACUCUGGUAAAUGAUGGAAUGGGAU Stc1; Stc rno-miR-205 1216 1239 GUC-UGAGGCCACCUUACUUCCU- :| ||||:||| ||||| ||| UGGCACUCUGGUA-AAUGAUGGAA Stc1; Stc rno-miR-21 946 972 -AGUUGUAGUCA-GA---CUAUUCGAU |||||||||| || |||::|| CUCAACAUCAGAACUUAAGAUGGGCC- Stc1; Stc rno-miR-211 1224 1245 UCCGUUUCCUACUGUUUCCCUU ||:||| ||||: |||| UGGUAAAUGAUGGAAU-GGGAU Stc1; Stc rno-miR-217 324 352 UAGGUCAGU--CA--AGGA--CUACGUCAU ||||||| || ||: ||||:|| -CCCAGUCAUUGUAAUCUGAAGAUGUAGG- Stc1; Stc rno-miR-22 1396 1414 UGUCAAGAAGUUGACCGUCGAA ||| || ||||||||| -AAGUAG-UC--CUGGCAGCUG Stc1; Stc rno-miR-222 1044 1088 CUCUGGGUCAUCGG-----------UCUACA--------- UCGA |||||| :||: |||||| |||| --AACCCAGAGGCUACAUUUGACUUAGAUGUAUCCUGAAACAGCUC Stc1; Stc rno-miR-291-5p 962 983 UCUCU-CCCGGAGGUGAAACUAC ||| |||||| :||| |||| -AAGAUGGGCCUAUACU-UGAUA Stc1; Stc rno-miR-292-3p 1192 1224 UGUGAGUUUUGGAC--------CG--CCGUGAA :|||| :||| || |||||| -GGCUCAUUGCCUUCCAUCAAUGCCUGGCACUC Stc1; Stc rno-miR-300 227 247 -CUUCUCUCGAAC--GGGAACGUAU |:|||||| || |||| UGGAGAGAGAAUGUACCCUC----- Stc1; Stc rno-miR-30a-5p 34 58 GAAGGUCAGC-----UCCUACAAAUGU- :|| || :||:|||||||| ---AUAG-CGUUUUAGGGGUGUUUACAC Stc1; Stc rno-miR-30b 35 58 -UCGACUCACAUCCUACAAAUGU- ||| :||:|||||||| UAGCGUUUUA-GGGGUGUUUACAC Stc1; Stc rno-miR-30c 44 58 CGACUCUCACAUCCUACAAAUGU- :||:|||||||| ----------AGGGGUGUUUACAC Stc1; Stc rno-miR-30d 25 58 GAAGGU----------CAGC--CCCUACAAAUGU- ||| ||: |||:|||||||| --ACCAAACUAAUAGCGUUUUAGGGGUGUUUACAC Stc1; Stc rno-miR-30e 41 58 AGGUCAGUUCCUACAAAUGU- |:|:||:|||||||| ----UUUAGGGGUGUUUACAC Stc1; Stc rno-miR-31 592 620 -GUCGAUA---CGGUCGUAGA---ACGGA ||| |||||||||| ||| CCAGAUUUUGAGCCAGCAUCUUCUUGCA- Stc1; Stc rno-miR-320 1034 1052 AAGCGGGA-GAGUUGGGUCGAAAA |||| |||||||||| --AGCCCAGCUCAACCCAGA---- Stc1; Stc rno-miR-324-3p 1396 1416 GGUCGUCGUGGACCCCGUC-ACC- ||:||: ||| ||||| ||| -AAGUAGU-CCU--GGCAGCUGGA Stc1; Stc rno-miR-324-5p 23 53 UGUGGUUA--------CGGGAUCCCCUACGC |||||| |: |||||| ||: UCACCAAACUAAUAGCGUUUUAGGGG-UGUU Stc1; Stc rno-miR-325 1144 1170 UGUGAAUGACUCG----UGGAUGAUCC |||||| || | :||||||| UCACUUAGUGUGACAAGGCCUACUAU- Stc1; Stc rno-miR-331 1298 1324 AAGAUCCU---AUCCGGG--UCCCCG- ||:||| |:|||:: :||||: -CCUGGGAACUUGGGCUUAAGGGGGUA Stc1; Stc rno-miR-342 1133 1158 CUGCCCAC-GCUAAAGA--CACACUCU :||| :||| || |||||| -CUGGGCUUUGAUCACUUAGUGUGAC- Stc1; Stc rno-miR-343 1298 1323 AGACCCGU-GUGCC----UCCCUCU ||||| : || ||||:| CCUGGGAACUUGGGCUUAAGGGGGU Stc1; Stc rno-miR-349 1308 1342 UCUCC-AAUUCUGUCGU-----------CCCGAC- :|| |||||: :|:| |||||| -UGGGCUUAAGGGGGUAUAAAUAACCCUGGGCUGU Stc1; Stc rno-miR-34a 1081 1100 UUGUUGGUCGAUUCUGUGACGGU- ||||| | ||| |||| -----ACAGCUCUGUCACAGCCAA Stc1; Stc rno-miR-34c 1182 1205 -CGUUAGUCGAUUGAUGUGACGGA- |||:|: :|::|| ||:||||| GGCAGUUC-UUGGCU-CAUUGCCUU Stc1; Stc rno-miR-351 1308 1339 GUCCGAGUUUCCCGA--------GGAGUCCCU :||||:||:||| | || | ||| UGGGCUUAAGGGGGUAUAAAUAACC-CUGGGC Stc1; Stc rno-miR-352 1336 1364 AUGAUACGUUGGA------UGAUGAGA- :||:| ||:||| ||| |||| GGCUGUCCAGCCUUAAUAGACUCCUCUU Stc1; Stc rno-miR-361 1210 1231 CAUGGGGACCUCUAAGACUAUU- |: ||||| ||||:||| -AAUGCCUGGCAC-UCUGGUAAA Stc1; Stc rno-miR-365 36 54 UAUUCCUAAAAAUCCCCGUAAU | |||||||||::|| ----AGCGUUUUAGGGGUGUUU Stc1; Stc rno-miR-370 1011 1056 UUGGUCCAA-------------GGUGGGGUCG-------- UCCG |||||| ||| |||||| |||| -CCCAGGUGAGAUAUCAAUCUCCCAGCCCAGCUCAACCCAGAGGCU Stc1; Stc rno-miR-376a* 220 245 -GAGUAU-CUUC-CUCUUAGAUGG- ||| |:|| |||||| |||| CCUCUUCUGGAGAGAGAAUGUACCC Stc1; Stc rno-miR-412 995 1022 UGCCGAUCA----CCUGG--UCCACUUCA ||:|| ||||| ||||||: -AGGUUAUCUGAAGGACCCCAGGUGAGA- Stc1; Stc rno-miR-422b 1344 1381 -CGGAAGA--CUGAGGUU-----------CAGGUCA- ||||| |||||| |||| || AGCCUUAAUAGACUCCUCUUACAUCUUUUGUCCUGUA Stc1; Stc rno-miR-424 444 468 -AGGUUUUGUACUUA-ACGACGAC- |:|: :|||||| || ||||| AUUCGUGUUAUGAAUCUG-UGCUGG Stc1; Stc rno-miR-489 462 492 -CGA-CGGUA------UAUACACUACAGUAA ||| ||||| ||||| ||||||| UGCUGGCCAUGGACGAAUAUGA-AUGUCAUG Stc1; Stc rno-miR-499 1416 1437 UUUGUAGUGACGUUC-AGAAUU- |||| |||:|:| |||||| --CCAUCUCUGUAGGAUCUUAAA Stc1; Stc rno-miR-99b 1 52 GCGUUCCA-------------G---------------C-CAAGAUGCCCAC |||:|| | | |||:|| ||||| -GCAGGGAGAGGUAUUCACAGCCUCACCAAACUAAUAGCGUUUUAGGGGUGU Stc1; Stc rno-let-7d 1337 1362 uGAUACGUUGGA------UGAUGGAGA ||:| ||:||| ||| ||||| gCTGTCCAGCCTTAATAGACT-CCTCT Stc1; Stc rno-miR-101b 633 659 gaagUCGAUAGU----GU-CAUGACAU ||||| || :| |||||||| aaaaAGCTAACATCTTTATGTACTGTA Stc1; Stc rno-miR-101b 735 760 gaagUCGA----UAGUGUCAUGACAU |||| | :|: |||||||| aaatAGCTGAAAACTATTGTACTGTA Stc1; Stc rno-miR-103 1368 1390 aguAUCGGGACAUGUUACGACGa | |:|||||| | ||||| cttTTGTCCTGTAACACGCTGCc Stc1; Stc rno-miR-107 1368 1390 acuAUCGGGACAUGUUACGACGa | |:|||||| | ||||| cttTTGTCCTGTAACACGCTGCc Stc1; Stc rno-miR-10a 1091 1116 GUGU---UUAAGCCUAGAUGUCCcau |||| || | ||| :|||||| CACAGCCAACTGGGAATTACAGGaat Stc1; Stc rno-miR-128a 702 729 UUUUCUCU--GG---CCA-AGUGACACu || ||||| |: ||| | |||||| AACAGAGAATCTTAAGGTCTAACTGTGg Stc1; Stc rno-miR-128b 702 729 cUUUCUCU--GG---CCA-AGUGACACu | ||||| |: ||| | |||||| aACAGAGAATCTTAAGGTCTAACTGTGg Stc1; Stc rno-miR-129* 1300 1322 uacgaaaAACCC-CAUUCCCgaa ||||| |||||| tgggaacTTGGGCTTAAGGGggt Stc1; Stc rno-miR-133a 1398 1419 ugucgaccaacuuccCCUGGUu |||||| gtagtcctggcagctGGACCAt Stc1; Stc rno-miR-134 353 370 GGGAGACCAGUUGGUCAGUGu ||||:| | || ::||||| CCCTTTAG--AA-TGGTCACc Stc1; Stc rno-miR-137 177 199 GAUGC-G-CAUAAGAAUUCGUUAU | |:| | | |||| | ||||||| CAATGACAGCATTC-TTAGCAATA Stc1; Stc rno-miR-140* 886 911 ACAGGCACCAAG-AU--GGGACACCau | |||| |||| |: ||:||||| TATCCG-CGTTCATGCTCCTTGTGGcc Stc1; Stc rno-miR-144 639 659 GAUCAUGUAGUAG-AUAUGACAU ||| ||||| |: |:||||||| CTA--ACATCTTTATGTACTGTA Stc1; Stc rno-miR-145 1285 1312 uuCCC-----UAAGGACCCUUUUG-ACCUG ||| | ||||||| ||| |||:| ttGGGTCTTTAGTCCTGGG--AACTTGGGC Stc1; Stc rno-miR-146 1169 1192 uuGGGUACCUUAA--GUCAAGAgu ||| ||||| | ||||||| tcCCCTTGGAAGTGGCAGTTCTtg Stc1; Stc rno-miR-150 1221 1245 GUGACCAUGUUC--CC-AACCCUcu | |||||| | | || ||||| CTCTGGTAAATGATGGAATGGGAta Stc1; Stc rno-miR-151* 1331 1363 auGAUCUGACA---C-------UC-GAGGAGcu ||:|:|||| | || |||||| ccCTGGGCTGTCCAGCCTTAATAGACTCCTCtt Stc1; Stc rno-miR-15b 440 469 ACAUUUGG-----UACU---ACACGACgau || || :| |||| ||||||| TGGAATTCGTGTTATGAATCTGTGCTGgcc Stc1; Stc rno-miR-18 808 837 AUAGACGUG-AUCU--------ACGUGGAAU ||| ||||: |||| ||:|||||| TAT-TGCATATAGATTTAGTTTTGTACCTTA Stc1; Stc rno-miR-181a 466 488 ugaGUGGCUGUCGCAACUUACAa ||: |||: ||||||| ggcCATGGACGAATATGAATGTc Stc1; Stc rno-miR-181b 467 488 gGGUGGCUGUCGUUACUUACAa |||: |||: |||||||| gCCATGGACGAATATGAATGTc Stc1; Stc rno-miR-181c 466 488 ugaGUGGCUGUCCA-ACUUACAa ||: |||: | ||||||| ggcCATGGACGAATATGAATGTc Stc1; Stc rno-miR-195 449 469 cgguUAUAAAGACACGACgau ||: ||||||||| tgttATGAATCTGTGCTGgcc Stc1; Stc rno-miR-199a 1312 1337 cuugUCCAUCAGA---CUUGUGACCC ||| :|| | ||| ||||| cttaAGGGGGTATAAATAACCCTGGG Stc1; Stc rno-miR-204 1224 1244 uCCGUAUCCUACUGUUUCCCUu ||:| | ||||: || |||| tGGTAAATGATGG-AATGGGAt Stc1; Stc rno-miR-205 1217 1237 gucUGAGGCCACCUUACUUCCU ||||:||| ||||| ||| ggcACTCTGGT-AAATGATGGA Stc1; Stc rno-miR-21 947 972 AGUUGUAGUC-AGA---CUAUUCGau |||||||||| || |||::|| TCAACATCAGAACTTAAGATGGGCct Stc1; Stc rno-miR-214 65 86 gACGGACA-GACACGGACGAca || ||| ||||||||| | tTGAGTGTACTGTGCCTGGTtt Stc1; Stc rno-miR-217 323 352 uaGGUCAGU--CA--AGG--ACUACGUCau ||||||| || ||: ||||:|| gcCCAGTCATTGTAATCTGAAGATGTAGgt Stc1; Stc rno-miR-22 1395 1413 UGUCAAGAAGUUGACCGUCGAa | || | || ||||||||| AAAG-TAGTC--CTGGCAGCTg Stc1; Stc rno-miR-222 1050 1076 CUCUGG-GUCAUCGG--UCUACAUCGa |||:|: || | | | ||||||| | GAGGCTACATTTGACTTAGATGTATCc Stc1; Stc rno-miR-291-5p 1120 1145 UCUCU--CCCGGAGG--UGAAACUAc ||||| ||||: :||||||| AGAGATCATCCCTCTGGGCTTTGATc Stc1; Stc rno-miR-291-5p 961 982 ucUCU-CCCGGAGGUGAAACUAc ||| |||||| :|| ||||| taAGATGGGCCTATAC-TTGATa Stc1; Stc rno-miR-292-3p 1205 1223 uGUGAGUUUUGGACCGCCGUGAa || |||| :|| :|||||| cCA-TCAATGCC---TGGCACTc Stc1; Stc rno-miR-300 598 621 cuuCUC--UCGAACGGGAACGUAu ||| ||| | ::||||||| tttGAGCCAGCATCTTCTTGCATc Stc1; Stc rno-miR-300 228 253 CUUCUCUCGAAC----GGGAACGUAu |:|||||| || |:||| ||| GGAGAGAGAATGTACCCTCTTCCATc Stc1; Stc rno-miR-30a-5p 39 56 gAAGGUCAGCUCCUACAAAUGU ||::|| ||:|||||||| gTTTTAG----GGGTGTTTACA Stc1; Stc rno-miR-30b 36 56 UCGACUCACAUCCUACAAAUGU ||| | | :||:|||||||| AGC-GTTTTAGGGGTGTTTACA Stc1; Stc rno-miR-30c 30 56 cGACUCUCACA----UCCUACAAAUGU || | || || :||:|||||||| aCTAATAGCGTTTTAGGGGTGTTTACA Stc1; Stc rno-miR-30d 31 56 GAAGGUCAGC-----CCCUACAAAUGU || :|| || |||:|||||||| CTAATAG-CGTTTTAGGGGTGTTTACA Stc1; Stc rno-miR-30e 37 56 aggucAGUUCCUACAAAUGU |:|:||:|||||||| gcgttTTAGGGGTGTTTACA Stc1; Stc rno-miR-31 593 620 GUCGAUA---CGGUCGU---AGAACGga ||| | | ||||||| |||||| CAGATTTTGAGCCAGCATCTTCTTGCat Stc1; Stc rno-miR-320 1023 1045 aAGCGGGAGAGUUGGGUCGAaaa || :||| ||:||||||| aTCAATCTCCCAGCCCAGCTcaa Stc1; Stc rno-miR-324-3p 1393 1414 GG--UCGUCGUGGACCCCGUC-ACC || ||:||: ||| ||||| ||| CCAAAGTAGT-CCT--GGCAGCTGG Stc1; Stc rno-miR-324-5p 28 52 UGUGGUUA-CG-GGAUCCCCUACgc | ||:||| || ::| |||:|| AAACTAATAGCGTTTTAGGGGTGtt Stc1; Stc rno-miR-325 1144 1170 uGUGAAUGACUC-GU---GGAUGAUcc |||||| || | || ||||||| tCACTTAGTGTGACAAGGCCTACTAtc Stc1; Stc rno-miR-326 1033 1053 ugaccuccuucccGGGUCUCC |||||||| cagcccagctcaaCCCAGAGG Stc1; Stc rno-miR-331 1297 1321 AAGAUCCU---AUCCG-GGUCCCCg | ||:||| |:||| : ||||| TCCTGGGAACTTGGGCTTAAGGGGg Stc1; Stc rno-miR-333 44 62 UUUUCAUUGAUCGUGUGGUg |:::||: :|| ||||||| AGGGGTGTTTA-CACACCAa Stc1; Stc rno-miR-342 1132 1158 cugCCC-ACGCUAAAGA--CACACUcu ||| | :||| || |||||| tctGGGCTTTGATCACTTAGTGTGAca Stc1; Stc rno-miR-343 1306 1322 agACCCGUGUGCCUCCCUCu ||||| :| ||||:| ctTGGGCTTA---AGGGGGt Stc1; Stc rno-miR-349 1316 1340 UCUCCAAU-UCUGU--CGUCCCGAC ||:|| || | |:| | |||||| AGGGGGTATAAATAACCCTGGGCTG Stc1; Stc rno-miR-34a 1076 1098 uugUUGGUCGAUUCUGUGACGGU || ||||| | ||| |||| ctgAAACAGCTCTGTCACAGCCA Stc1; Stc rno-miR-34c 1183 1203 CGUUAGUCGAUUGAUGUGACGGA |||:|: :|::|| ||:||||| GCAGTT-CTTGGCT-CATTGCCT Stc1; Stc rno-miR-361 1209 1229 caUGGGGACCUCUAAGACUAUU |: ||||| | ||||:||| caATGCCTGG-CACTCTGGTAA Stc1; Stc rno-miR-365 34 53 UAUUCCUAAAAAUCCCCGUAAu |||: | |||||||||::|| ATAGCG--TTTTAGGGGTGTTt Stc1; Stc rno-miR-370 1035 1054 uuGGUCCAAGGUGGGGUCGUCCG |||| | || ||||| |||| gcCCAGCT--CAACCCAG-AGGC Stc1; Stc rno-miR-376a* 223 243 GAGUAUCUUCCUCUUAGAUGG ||: |:||: |||||| |||| CTTCTGGAGAGAGAATGTACC Stc1; Stc rno-miR-382 376 400 CUUA---GGUGGUG-CUUGUUGAAg ||:| ||| :|| |||||||| GAGTTAGCCAATACAAAACAACTTt Stc1; Stc rno-miR-383 322 345 uCGGUGUCAGUGG-A--AGACUaga ||| ||||||:: | ||||| tGCC-CAGTCATTGTAATCTGAaga Stc1; Stc rno-miR-412 993 1022 UG-CCGAU---C-ACCU--GGUCCACUuca || ||:|| | ||| |||||||| ACAGGTTATCTGAAGGACCCCAGGTGAgat Stc1; Stc rno-miR-422b 1325 1346 cggaagacugagguuCAGGUCa |||||| aaataaccctgggctGTCCAGc Stc1; Stc rno-miR-424 445 469 AGGUUUUGUACUUA---ACGACgac |:|: : :|||||| ||||| TTCGTGTTATGAATCTGTGCTGgcc Stc1; Stc rno-miR-489 463 491 CGA-CGGUA------UAUACACUACAGUAa ||| ||||| ||||| ||||||| GCTGGCCATGGACGAATATG-AATGTCATg Stc1; Stc rno-miR-499 1414 1435 uUUGUAGUGACGUUC-AGAAUU | |||| |||:|:| |||||| gACCATCTCTGTAGGATCTTAA Stc1; Stc rno-miR-542-3p 1073 1094 aagucaaUAGUU-AGACAGUGU | ||: ||||||||| atcctgaAACAGCTCTGTCACA Stc1; Stc rno-miR-542-5p 1152 1176 gCACUGUAC----UACUAGGGGcuc |||||| | | |||||| tGTGACAAGGCCTACTATCCCCttg Stc1; Stc rno-miR-99b 29 50 gcguuccagcCAAGAUGCCCAC |||:|| ||||| aactaatagcGTTTTAGGGGTG Stc1; Stc rno-miR-101b 652 659 GAAG----------------UCGAUAGUGU-----CAUGACAU ||||| ||: |||||||| GCAUCUAAUGAAAAACAAAAAGCUAACAUCUUUAUGUACUGUAA Stc1; Stc rno-miR-101b 753 760 GAA-----------------GUCGAUAG-UGU---CAUGACAU :||||: || |||||||| GUCUAACUGUGGAAUAUAAAUAGCUGAAAACUAUUGUACUGUAC Stc1; Stc rno-miR-181a 481 488 -----------------UGAGUGGCUGUC-GCA---ACUUACAA :|| :|| |::| || ||||||| UCGUGUUAUGAAUCUGUGCUGGCC-AUGGACGAAUAUGAAUGUC Stc1; Stc rno-miR-181b 481 488 G---------------------GGUGGCUGUCGUUACUUACAA |||: |||: |||||||| UCGUGUUAUGAAUCUGUGCUGGCCAUGGACGAAUAUGAAUGUC Stc1; Stc rno-miR-181c 481 488 -----------------UGAGUGG---CUGUCCA-ACUUACAA :|| :|| |||: ||||||| UCGUGUUAUGAAUCUGUGCUGGCCAUGGACGAAUAUGAAUGUC Stc1; Stc rno-miR-22 1406 1413 UG------------------------UCAAGAAGUUGACCGUCGAA ||| || ||||||||| UUGUCCUGUAACACGCUGCCUGCCAAAGUAG-UC--CUGGCAGCUG Stc1; Stc rno-miR-291-5p 1138 1145 -----------------UCUCUCCC--GGAGG--UGAAACUAC ||||| ||||: :||||||| GGAAUUACAGGAAUCAAAGAGAUCAUCCCUCUGGGCUUUGAUC Stc1; Stc rno-miR-300 614 621 CUU-------------------CUC--UCGAACGGGAACGUAU ||| ||| ::||||||| CCUGGUUCUCCAACCAGAUUUUGAGCCAGCAUCUUCUUGCAUC Stc1; Stc rno-miR-30a-5p 49 56 -----------------GAAGGUCAGC-----UCCUACAAAUGU || :|| || :||:|||||||| UUCACAGCCUCACCAAACUAAUAG-CGUUUUAGGGGUGUUUACAC Stc1; Stc rno-miR-30b 49 56 ----------------------UCGACUCACAUCCUACAAAUGU ||| :||:|||||||| UUCACAGCCUCACCAAACUAAUAGCGUUUUA-GGGGUGUUUACAC Stc1; Stc rno-miR-30c 49 56 CGACUC----------------UCACA----UCCUACAAAUGU || || :||:|||||||| UUCACAGCCUCACCAAACUAAUAGCGUUUUAGGGGUGUUUACAC Stc1; Stc rno-miR-30d 49 56 -----------------GAAGGUCAGC-----CCCUACAAAUGU || :|| || |||:|||||||| UUCACAGCCUCACCAAACUAAUAG-CGUUUUAGGGGUGUUUACAC Stc1; Stc rno-miR-30e 49 56 AGGUC-----------------------AGUUCCUACAAAUGU |:|:||:|||||||| UUCACAGCCUCACCAAACUAAUAGCGUUUUAGGGGUGUUUACAC Stc1; Stc rno-miR-326 1046 1053 UGACCUCCUUCCC----------------------GGGUCUCC |||||||| CCCAGGUGAGAUAUCAAUCUCCCAGCCCAGCUCAACCCAGAGGC Stc1; Stc rno-miR-333 55 62 ------------------------UUUUCAUUGAUCGUGUGGUG |:::||: :|| ||||||| GCCUCACCAAACUAAUAGCGUUUUAGGGGUGUUUA-CACACCAA Stc1; Stc rno-miR-382 393 400 ------------------CUUAGGUGGUGC----UUGUUGAAG ||:|: :||| ||||||||: UAGAAUGGUCACCCAGUAGAGUUAGCCAAUACAAAACAACUUUA Stc1; Stc rno-miR-489 484 491 --------------CGAC-GGUA------UAUACACUACAGUAA |||| |||| ||||| ||||||| UGUUAUGAAUCUGUGCUGGCCAUGGACGAAUAUGA-AUGUCAUG Stc1; Stc rno-miR-542-3p 1087 1094 AAGUCAAUA---------------------GUU-AGACAGUGU ||: ||||||||| GGCUACAUUUGACUUAGAUGUAUCCUGAAACAGCUCUGUCACAG

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Stc1 RAID00025187 rno-miR-335 miRNA MIMAT0000575 Stc1 mRNA 81801 Prediction 0.1828 Stc1 RAID00160323 rno-miR-30c-1-3p miRNA MIMAT0004719 Stc1 mRNA 81801 Prediction 0.1828 Stc1 RAID00232139 rno-miR-30c-2-3p miRNA MIMAT0005442 Stc1 mRNA 81801 Prediction 0.1828 Stc1 RAID00247040 rno-miR-6333 miRNA MIMAT0025074 Stc1 mRNA 81801 Prediction 0.1828 Stc1 RAID00247379 rno-miR-181b-5p miRNA MIMAT0000859 Stc1 mRNA 81801 Prediction 0.1828 Stc1 RAID00282792 rno-miR-30d-5p miRNA MIMAT0000807 Stc1 mRNA 81801 Prediction 0.2202 Stc1 RAID00320875 rno-miR-6331 miRNA MIMAT0025070 Stc1 mRNA 81801 Prediction 0.1828 Stc1 RAID00477594 rno-miR-181c-5p miRNA MIMAT0000857 Stc1 mRNA 81801 Prediction 0.1828 Stc1 RAID00538576 rno-miR-30e-5p miRNA MIMAT0000805 Stc1 mRNA 81801 Prediction 0.2202 Stc1 RAID00628728 rno-miR-3543 miRNA MIMAT0017797 Stc1 mRNA 81801 Prediction 0.1828 Stc1 RAID00680098 rno-miR-542-3p miRNA MIMAT0003179 Stc1 mRNA 81801 Prediction 0.2202 Stc1 RAID00682706 rno-miR-499-5p miRNA MIMAT0003381 Stc1 mRNA 81801 Prediction 0.1828 Stc1 RAID00823439 rno-miR-139-5p miRNA MIMAT0000845 Stc1 mRNA 81801 Prediction 0.1828 Stc1 RAID00862458 rno-let-7a-2-3p miRNA MIMAT0017086 Stc1 mRNA 81801 Prediction 0.2202 Stc1 RAID00870423 rno-miR-509-3p miRNA MIMAT0024850 Stc1 mRNA 81801 Prediction 0.1828 Stc1 RAID00964934 rno-miR-208b-5p miRNA MIMAT0017844 Stc1 mRNA 81801 Prediction 0.1828 Stc1 RAID01036012 rno-miR-330-5p miRNA MIMAT0004641 Stc1 mRNA 81801 Prediction 0.1828 Stc1 RAID01040385 rno-miR-33-5p miRNA MIMAT0000812 Stc1 mRNA 81801 Prediction 0.1828 Stc1 RAID01079522 rno-miR-124-3p miRNA MIMAT0000828 Stc1 mRNA 81801 Prediction 0.1828 Stc1 RAID01152861 rno-miR-190b-3p miRNA MIMAT0017298 Stc1 mRNA 81801 Prediction 0.1828 Stc1 RAID01173555 rno-miR-141-5p miRNA MIMAT0017128 Stc1 mRNA 81801 Prediction 0.1828 Stc1 RAID01313638 rno-miR-544-5p miRNA MIMAT0017359 Stc1 mRNA 81801 Prediction 0.1828 Stc1 RAID01386259 rno-miR-935 miRNA MIMAT0012845 Stc1 mRNA 81801 Prediction 0.1828 Stc1 RAID01394295 rno-miR-208a-3p miRNA MIMAT0000880 Stc1 mRNA 81801 Prediction 0.1828 Stc1 RAID01395404 rno-miR-186-5p miRNA MIMAT0000863 Stc1 mRNA 81801 Prediction 0.1828 Stc1 RAID01571652 rno-miR-101b-3p miRNA MIMAT0000615 Stc1 mRNA 81801 Prediction 0.2381 Stc1 RAID01594585 rno-miR-30a-5p miRNA MIMAT0000808 Stc1 mRNA 81801 Prediction 0.2202 Stc1 RAID01650679 rno-miR-137-3p miRNA MIMAT0000843 Stc1 mRNA 81801 Prediction 0.2202 Stc1 RAID01807555 rno-miR-26a-5p miRNA MIMAT0000796 Stc1 mRNA 81801 Prediction 0.1828 Stc1 RAID01842576 rno-miR-320-3p miRNA MIMAT0000903 Stc1 mRNA 81801 Prediction 0.1828 Stc1 RAID01849476 rno-miR-30b-5p miRNA MIMAT0000806 Stc1 mRNA 81801 Prediction 0.2202 Stc1 RAID01875505 rno-miR-208a-5p miRNA MIMAT0017155 Stc1 mRNA 81801 Prediction 0.1828 Stc1 RAID01968344 rno-miR-326-3p miRNA MIMAT0000560 Stc1 mRNA 81801 Prediction 0.1828 Stc1 RAID01999547 rno-miR-873-5p miRNA MIMAT0005339 Stc1 mRNA 81801 Prediction 0.1828 Stc1 RAID02030820 rno-miR-129-5p miRNA MIMAT0000600 Stc1 mRNA 81801 Prediction 0.1828 Stc1 RAID02032580 rno-miR-615 miRNA MIMAT0012835 Stc1 mRNA 81801 Prediction 0.1828 Stc1 RAID02047715 rno-miR-181a-5p miRNA MIMAT0000858 Stc1 mRNA 81801 Prediction 0.1828 Stc1 RAID02054108 rno-miR-27b-3p miRNA MIMAT0000798 Stc1 mRNA 81801 Prediction 0.1828 Stc1 RAID02078725 rno-miR-31a-5p miRNA MIMAT0000810 Stc1 mRNA 81801 Prediction 0.1828 Stc1 RAID02084275 rno-miR-142-5p miRNA MIMAT0000847 Stc1 mRNA 81801 Prediction 0.1828 Stc1 RAID02113901 rno-miR-30c-5p miRNA MIMAT0000804 Stc1 mRNA 81801 Prediction 0.2202 Stc1 RAID02157717 rno-miR-382-5p miRNA MIMAT0003201 Stc1 mRNA 81801 Prediction 0.2202 Stc1 RAID02168102 rno-miR-300-3p miRNA MIMAT0000902 Stc1 mRNA 81801 Prediction 0.1828 Stc1 RAID02287786 rno-miR-10b-3p miRNA MIMAT0017092 Stc1 mRNA 81801 Prediction 0.1828 Stc1 RAID02336412 rno-miR-497-3p miRNA MIMAT0017230 Stc1 mRNA 81801 Prediction 0.1828 Stc1 RAID02339073 rno-miR-425-5p miRNA MIMAT0005314 Stc1 mRNA 81801 Prediction 0.1828 Stc1 RAID02563257 rno-miR-6315 miRNA MIMAT0025050 Stc1 mRNA 81801 Prediction 0.1828 Stc1 RAID02592901 rno-miR-146b-5p miRNA MIMAT0005595 Stc1 mRNA 81801 Prediction 0.1828 Stc1 RAID02857191 rno-miR-455-5p miRNA MIMAT0005316 Stc1 mRNA 81801 Prediction 0.1828 Stc1 RAID02887619 rno-let-7g-3p miRNA MIMAT0035720 Stc1 mRNA 81801 Prediction 0.1828 Stc1 RAID02968649 rno-miR-29b-1-5p miRNA MIMAT0005445 Stc1 mRNA 81801 Prediction 0.1828 Stc1 RAID02974259 rno-miR-101a-3p miRNA MIMAT0000823 Stc1 mRNA 81801 Prediction 0.2381 Stc1 RAID03019593 rno-miR-485-5p miRNA MIMAT0003203 Stc1 mRNA 81801 Prediction 0.2202 Stc1 RAID03093978 rno-miR-22-3p miRNA MIMAT0000791 Stc1 mRNA 81801 Prediction 0.1828 Stc1 RAID03141926 rno-miR-551b-5p miRNA MIMAT0017335 Stc1 mRNA 81801 Prediction 0.1828 Stc1 RAID03375210 rno-miR-144-3p miRNA MIMAT0000850 Stc1 mRNA 81801 Prediction 0.2202 Stc1 RAID03404767 rno-miR-384-5p miRNA MIMAT0005309 Stc1 mRNA 81801 Prediction 0.2202 Stc1 RAID03430296 rno-miR-340-5p miRNA MIMAT0004650 Stc1 mRNA 81801 Prediction 0.2202 Stc1 RAID03432038 rno-miR-146a-5p miRNA MIMAT0000852 Stc1 mRNA 81801 Prediction 0.1828 Stc1 RAID03534219 rno-miR-200c-3p miRNA MIMAT0000873 Stc1 mRNA 81801 Prediction 0.1828 Stc1 RAID03551782 rno-miR-128-3p miRNA MIMAT0000834 Stc1 mRNA 81801 Prediction 0.1828 Stc1 RAID03571013 rno-miR-181d-5p miRNA MIMAT0005299 Stc1 mRNA 81801 Prediction 0.1828 Stc1 RAID03607135 rno-miR-1193-5p miRNA MIMAT0017858 Stc1 mRNA 81801 Prediction 0.1828 Stc1 RAID03669046 rno-miR-9a-3p miRNA MIMAT0004708 Stc1 mRNA 81801 Prediction 0.2202 Stc1 RAID03748930 rno-miR-182 miRNA MIMAT0005300 Stc1 mRNA 81801 Prediction 0.1828 Stc1 RAID03795515 rno-miR-383-5p miRNA MIMAT0003114 Stc1 mRNA 81801 Prediction 0.1828 Stc1 RAID03854136 rno-miR-27a-3p miRNA MIMAT0000799 Stc1 mRNA 81801 Prediction 0.1828 Stc1 RAID03923179 rno-miR-5132-3p miRNA MIMAT0035751 Stc1 mRNA 81801 Prediction 0.1828 Stc1 RAID03959854 rno-miR-186-3p miRNA MIMAT0017143 Stc1 mRNA 81801 Prediction 0.1828 Stc1 RAID04045882 rno-miR-26b-5p miRNA MIMAT0000797 Stc1 mRNA 81801 Prediction 0.1828