DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000547 rno-miR-322* 301549 Wdfy1 acaacguCGCGAAGUACAAa |:| ||| |||| cgaguuuGUGAUUCCUGUUa 2 14 11 30 [rn4:9:79012644-79012663:-] 0.7660 121 0 -7.88 -0.2411 MIMAT0004639 rno-miR-325-3p 301549 Wdfy1 aacuauccuccacgAGUUAUuu |||||| uaaaaaaaaacaaaUCAAUAuu 3 9 331 352 [rn4:9:79010174-79010195:-] 0.5076 120 0 -3.47 -0.1964 MIMAT0000574 rno-miR-140* 301549 Wdfy1 ggcaCCAAGA-UG-GGACACCAu || | | || |||||||| uaugGGAUAUGACUCCUGUGGUg 2 18 162 184 [rn4:9:79010342-79010364:-] 0.6278 151 7 -22.24 -0.2020 MIMAT0000604 rno-miR-350 301549 Wdfy1 cacuuUCACAUACCCGAAACACUu || || | | ||||||| guuccAG-GU-UCGAGUUUGUGAu 2 20 1 22 [rn4:9:79012652-79012673:-] 0.7660 143 7 -8.63 -1.2219 MIMAT0004711 rno-miR-21* 301549 Wdfy1 cugUCGGGUAGCUGACGACAAc ||::::| ||:| ||||| ucgAGUUUGU-GAUUCCUGUUa 2 20 10 30 [rn4:9:79012644-79012664:-] 0.7660 129 0 -12.12 -0.1834 MIMAT0004718 rno-miR-29a* 301549 Wdfy1 gacuUGUGGUUUUCUUUAGUca | | |||| |||||| accuAAAAAAAAACAAAUCAau 3 19 328 349 [rn4:9:79010177-79010198:-] 0.5076 138 0 -5.48 -0.2010 MIMAT0004734 rno-miR-138* 301549 Wdfy1 gggaccacaACACU-UCAUCGGc || || ||||||| ucauguaaaUG-GACAGUAGCCa 2 14 307 328 [rn4:9:79010198-79010219:-] 0.5076 142 7 -12.80 -0.6546 MIMAT0004739 rno-miR-204* 301549 Wdfy1 uugcagggaaacgGAAGGGUcg :|||||| ggaaaacauaacaUUUCCCAua 3 10 80 101 [rn4:9:79011199-79011220:-] 0.7838 121 0 -9.05 -0.1807 MIMAT0004741 rno-miR-219-1-3p 301549 Wdfy1 gcccUGCAG-GUCUG-CGUU-GAGa ||||: |: || |||| ||| cuacACGUUACGCACAGCAACCUCc 2 19 245 269 [rn4:9:79010257-79010281:-] 0.6278 120 0 -16.54 -0.6579 MIMAT0000893 rno-miR-290 301549 Wdfy1 uuuuucacggggguaUCAAACuc |||||| ---guuccagguucgAGUUUGug 3 9 1 20 [rn4:9:79012654-79012673:-] 0.7660 120 0 -11.90 -0.1852 MIMAT0000899 rno-miR-297 301549 Wdfy1 guACGUAUGUACGUGUGUA-UGUa | |||: | | | |||| ||| guUUCAUGAAGGAAAACAUAACAu 2 22 70 93 [rn4:9:79011207-79011230:-] 0.7838 125 0 -11.40 -1.2121 MIMAT0000900 rno-miR-298 301549 Wdfy1 cccUUCUUGUCGGGAGGAGA-CGg :||:|| || ||:|||| || gauGAGGACCGCACUUCUCUAGCa 2 21 44 67 [rn4:9:79011233-79011248,79012623-79012630:-] 0.7749 124 0 -21.08 -0.2942 MIMAT0004787 rno-miR-543 301549 Wdfy1 cgCUUUUUGUGCGCCCGUUGAa |:: :|| | ||||||| guGGGCUGCAGCCUGGCAACUg 2 21 182 203 [rn4:9:79010323-79010344:-] 0.6278 148 7 -18.15 -0.2621 MIMAT0004791 rno-miR-379* 301549 Wdfy1 caaucaccugguacaAUGUAUc |||||| uuaaaaagaaaaaaaUACAUA- 2 8 354 374 [rn4:9:79010152-79010172:-] 0.5076 120 6 -3.42 -0.4965 MIMAT0003380 rno-miR-505 301549 Wdfy1 ccuuugGUCGUUCACAACug ||| |||||| gugggaCAGAUCGUGUUGua 3 15 138 157 [rn4:9:79011143-79011162:-] 0.7838 126 0 -15.13 -0.1339 MIMAT0005286 rno-miR-878 301549 Wdfy1 agaUGGGUCAU--ACCACAGUACg :|:||| | | ||||||| guaGCUCAGCAGCCGCUGUCAUGu 2 20 289 312 [rn4:9:79010214-79010237:-] 0.5076 150 7 -16.66 -0.2640 MIMAT0005319 rno-miR-484 301549 Wdfy1 uaGCCCUCCCCUGAC-UCGGACu | | :| ||:||| |||||| ucCUGUGGUGGGCUGCAGCCUGg 2 21 175 197 [rn4:9:79010329-79010351:-] 0.6278 132 6 -27.42 -0.3460 MIMAT0005327 rno-miR-672 301549 Wdfy1 agUGUGU-GU-CAUGUGGUUGGAGu ||||: :| | ||| ||||||| cuACACGUUACGCACAGCAACCUCc 2 22 245 269 [rn4:9:79010257-79010281:-] 0.6278 163 7 -23.78 -0.4618 MIMAT0012823 rno-miR-490 301549 Wdfy1 gucguaccucagGAGGUCCAAc :|||||||| -----------gUUCCAGGUUc 2 11 1 11 [rn4:9:79012663-79012673:-] 0.7660 146 7 -13.90 -1.0989 MIMAT0012824 rno-miR-513 301549 Wdfy1 uacuuUCUGUGGAAGAACACUu ||:: | :|||||| guuccAGGUUCGAGUUUGUGAu 2 18 1 22 [rn4:9:79012652-79012673:-] 0.7660 129 6 -10.46 -0.1202 MIMAT0012826 rno-miR-220 301549 Wdfy1 uccagAGACUG-UGACACCACc | |||| |||||||| ugggaUAUGACUCCUGUGGUGg 2 17 164 185 [rn4:9:79010341-79010362:-] 0.6278 155 7 -27.45 -0.1164 MIMAT0012851 rno-miR-547 301549 Wdfy1 gaGUGAAUUU--CU-UCAU-GGUu ||: |||| || |||| ||| guCAUGUAAAUGGACAGUAGCCAc 2 19 306 329 [rn4:9:79010197-79010220:-] 0.5076 120 0 -10.21 -0.7941 MIMAT0000851 rno-miR-145 301549 Wdfy1 ucccuaaGGACCCUUUUGACCUg ||||| ||||||| gcugcagCCUGG--CAACUGGAu 2 17 186 206 [rn4:9:79010320-79010340:-] 0.6278 149 7 -20.93 -0.2442 MIMAT0000865 rno-miR-190 301549 Wdfy1 ugGAUUAUAUAGUUUGUAUAGu |||| | | ||||| ||| acCUAAAAAA--AAACAAAUCa 2 21 328 347 [rn4:9:79010179-79010198:-] 0.5076 129 0 -13.16 -0.1403 MIMAT0000866 rno-miR-191 301549 Wdfy1 guCGA-CGAAAACCCUAAGG-CAAc |:| | |||| |||||| ||| agGUUCGAGUUUGUGAUUCCUGUUa 2 22 6 30 [rn4:9:79012644-79012668:-] 0.7660 132 0 -15.93 -1.3304 MIMAT0000869 rno-miR-194 301549 Wdfy1 agguguACCUCAACGACAAUGu || : || ||||||: cgaguuUGUGAUUCCUGUUAUg 2 17 11 32 [rn4:9:79012642-79012663:-] 0.7660 136 0 -8.21 -0.1341 MIMAT0000876 rno-miR-203 301549 Wdfy1 gaucaccaggauUUGUAAAGug |||||||| gaaggaaaacauAACAUUUCcc 3 11 77 98 [rn4:9:79011202-79011223:-] 0.7838 130 0 -10.99 -0.2358 MIMAT0000878 rno-miR-205 301549 Wdfy1 gucugaggcCACCUUACUUCCu || ||||||| ucuagcaacGUUUCAUGAAGGa 2 14 61 82 [rn4:9:79011218-79011239:-] 0.7838 141 7 -14.08 -1.2549 MIMAT0000881 rno-miR-210 301549 Wdfy1 agucGGCGACAGUG---UGCGUGUc |:||| ||| ||||||| acguCUGCU-ACACGUUACGCACAg 2 19 238 261 [rn4:9:79010265-79010288:-] 0.6278 147 7 -26.49 -0.5713 MIMAT0000890 rno-miR-221 301549 Wdfy1 cuUUGG-GUCGUCUGUUACAUCGa |||| ||| : ||||||| ugAACCGAAGCCCUUCAUGUAGCu 2 22 271 294 [rn4:9:79010232-79010255:-] 0.5677 152 7 -19.86 -0.2898 MIMAT0000891 rno-miR-222 301549 Wdfy1 uggGUCAUCGG--UCUACAUCGa | | |||| ||||||| gaaCCGAAGCCCUUCAUGUAGCu 2 19 272 294 [rn4:9:79010232-79010254:-] 0.5677 145 7 -19.99 -0.2973 MIMAT0000896 rno-miR-292-5p 301549 Wdfy1 guuuucUCGGGGGUCAAACUCa || ::| |||||| | -guuccAGGUUCGAGUUUGUGa 2 17 1 21 [rn4:9:79012653-79012673:-] 0.7660 124 0 -12.80 -0.1173 MIMAT0001628 rno-miR-433 301549 Wdfy1 uguGGCUCCUCGGGUAGUACUa :| || | | : |||||| uucUCUAGCAACGUUUCAUGAa 2 20 58 79 [rn4:9:79011221-79011242:-] 0.7838 123 6 -8.18 -0.2156 MIMAT0005302 rno-miR-190b 301549 Wdfy1 uuGGAUUAUAGUUUGUAUAGu ||||| | ||||| ||| caCCUAAAAAAAAACAAAUCa 2 20 327 347 [rn4:9:79010179-79010199:-] 0.5076 139 0 -14.94 -0.1390 MIMAT0005302 rno-miR-190b 301549 Wdfy1 uuGGAUUAUAGUUUGUAUAGu | |:| : ||||||| | uuCAUGAAGGAAAACAUAACa 2 20 72 92 [rn4:9:79011208-79011228:-] 0.7838 123 0 -7.38 -0.1357 MIMAT0005320 rno-miR-495 301549 Wdfy1 uucuucacguGGUACAAACAaa :|: |||||| -guuccagguUCGAGUUUGUga 3 13 1 21 [rn4:9:79012653-79012673:-] 0.7660 124 0 -8.32 -0.2757 MIMAT0005339 rno-miR-873 301549 Wdfy1 uccucugaguguucAAGGACg |||||| guucgaguuugugaUUCCUGu 2 8 8 28 [rn4:9:79012646-79012666:-] 0.7660 120 6 -14.14 -0.1921

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Wdfy1 RAID00034699 rno-miR-3577 miRNA MIMAT0017863 Wdfy1 mRNA 301549 Prediction 0.1828 Wdfy1 RAID00255337 rno-miR-221-3p miRNA MIMAT0000890 Wdfy1 mRNA 301549 Prediction 0.1828 Wdfy1 RAID00491935 rno-miR-203a-3p miRNA MIMAT0000876 Wdfy1 mRNA 301549 Prediction 0.1828 Wdfy1 RAID00896202 rno-miR-194-5p miRNA MIMAT0000869 Wdfy1 mRNA 301549 Prediction 0.1828 Wdfy1 RAID01160000 rno-miR-433-3p miRNA MIMAT0001628 Wdfy1 mRNA 301549 Prediction 0.1828 Wdfy1 RAID01206377 rno-miR-191a-5p miRNA MIMAT0000866 Wdfy1 mRNA 301549 Prediction 0.1828 Wdfy1 RAID01340904 rno-miR-702-3p miRNA MIMAT0017885 Wdfy1 mRNA 301549 Prediction 0.1828 Wdfy1 RAID01918952 rno-miR-292-5p miRNA MIMAT0000896 Wdfy1 mRNA 301549 Prediction 0.1828 Wdfy1 RAID02591316 rno-miR-222-3p miRNA MIMAT0000891 Wdfy1 mRNA 301549 Prediction 0.1828 Wdfy1 RAID02610279 rno-miR-205 miRNA MIMAT0000878 Wdfy1 mRNA 301549 Prediction 0.1828 Wdfy1 RAID02949428 rno-miR-873-5p miRNA MIMAT0005339 Wdfy1 mRNA 301549 Prediction 0.1828 Wdfy1 RAID03080673 rno-miR-495 miRNA MIMAT0005320 Wdfy1 mRNA 301549 Prediction 0.1828 Wdfy1 RAID03151404 rno-miR-210-3p miRNA MIMAT0000881 Wdfy1 mRNA 301549 Prediction 0.1828 Wdfy1 RAID03491159 rno-miR-190b-5p miRNA MIMAT0005302 Wdfy1 mRNA 301549 Prediction 0.1828 Wdfy1 RAID03667527 rno-miR-190a-5p miRNA MIMAT0000865 Wdfy1 mRNA 301549 Prediction 0.1828 Wdfy1 RAID03767690 rno-miR-145-5p miRNA MIMAT0000851 Wdfy1 mRNA 301549 Prediction 0.1828