DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Kcmf1 rno-miR-10a 185 217 GUGUUUAAG-----CCUA-G--AUGUCCCAU- :||::| || | |:||||||: AGCAGGUAAAUGUAGGUAGCAGUGCAGGGUGA Kcmf1 rno-miR-122a 240 266 -UGUUUG-UGGUAACAGUGUGAGGU- :|||| :|: |:|||||| UGCAAAAGGCUCUCCUAAUACUCCAC Kcmf1 rno-miR-125a 185 215 GUGUCCAAUUUC--CCAGA-----GUCCCU :||||| || ||| ||||| AGCAGGUAAAUGUAGGUAGCAGUGCAGGGU Kcmf1 rno-miR-129 228 250 UCGUUCGGGUCUG-GCGUUUUUC- |:| ||: ||| :||||||:| UGUA--CCUUGACAUGCAAAAGGC Kcmf1 rno-miR-134 90 117 GGGAGACCAGUUGGU-----CAGUGU- ::|| |||| :|| ||:||| AUUUCAGGUCUGUCACUCUUGUUACAU Kcmf1 rno-miR-140* 51 75 ACAGGCACCAA-----GAUGGGACACCAU |||| |||:|||| ||| ----AGUGGACAACAGCUAUCCUG-GGUU Kcmf1 rno-miR-143 198 222 ACUCGAUGUCACGA---AGUAGAGU :|: :|||||| | ||||| -AGGUAGCAGUGCAGGGUGAUCUCU Kcmf1 rno-miR-144 21 40 GAUCAUGUAGUAGAUAUGACAU- |::|| |||:|:||||| ----AAUGUCCUCUGUGCUGUAU Kcmf1 rno-miR-16 13 39 -GCG---GUUAUAAAU-GCACGACGAU ||| ||||:| :||||||: UCGCAGACAAUGUCCUCUGUGCUGUA- Kcmf1 rno-miR-18 218 238 AUAGACGUGAUCUACGUGGAAU- ||||| ||:|||||: -CUCUGCUUCC--UGUACCUUGA Kcmf1 rno-miR-195 19 39 CGGUUAUAA-AGACACGACGAU ||||:| |||||||||: -ACAAUGUCCUCUGUGCUGUA- Kcmf1 rno-miR-20a* 189 213 ACAUUCACGAGCAU---UACGUCA |||| ||: ||| :||||| GGUAAAUGUAGGUAGCAGUGCAGG Kcmf1 rno-miR-217 12 40 UAG-GUCAGUCA-AGGAC-UACGUCAU- || ||| || |||| :||| ||| CUCGCAGACAAUGUCCUCUGUGCUGUAU Kcmf1 rno-miR-27b 14 58 -CGUCU-------------UGAAU----CGGUGA----CACUU ||||| :|| |||| |||:| CGCAGACAAUGUCCUCUGUGCUGUAUUUGCCAAUGAAAGUGGAC Kcmf1 rno-miR-292-5p 47 81 GUUUUC--------UCG---GGGGUCAAACUCA- :|||| ||| ||: :||||| || UGAAAGUGGACAACAGCUAUCCUGGGUUUGUGUG Kcmf1 rno-miR-298 17 46 CCUUCUUGU--CGGGAGG--------AGACGG- :||| |:||||: |:|||| ----AGACAAUGUCCUCUGUGCUGUAUUUGCCA Kcmf1 rno-miR-29b 60 85 -UUGU---GACUAAAGUUUACCACGAU |:| ||| ||: :||||| CAGCUAUCCUGGGUUUGUGUGGUGA-- Kcmf1 rno-miR-329 274 315 -UUUUUCC---AA--------------UCGACC-CACACAA :||:||| || ||||| |||||| UGAAGAGGAAAUUGAAAUCUCUAAUGAAGCUGCUGUGUGUA Kcmf1 rno-miR-33 192 212 GUUACGUUGA-UGUUACGUG ||||:|: | :||:|||| AAAUGUAGGUAGCAGUGCAG Kcmf1 rno-miR-331 180 216 -AAGA---UCC-----UAUCCGG-GUC----CCCG- |||| ||| :||||: ||| |||: CUUCUAGCAGGUAAAUGUAGGUAGCAGUGCAGGGUG Kcmf1 rno-miR-336 196 218 UCUGAUCUAUA--C-CUUCCCACU- |||:|| | | ||||||| ---GUAGGUAGCAGUGCAGGGUGAU Kcmf1 rno-miR-338 17 38 AGUUGUUUUAGU-GACUACGACCU :|||| :|| ||| ||||| -AGACAAUGUCCUCUG-UGCUGU- Kcmf1 rno-miR-349 197 216 UCUCCAAUUC-UGUCGUCCCGAC |||| || | ||||||: -UAGGU--AGCAGUGCAGGGUG- Kcmf1 rno-miR-350 46 86 CACUUUCACAU------------ACCCGAAA----CACUU |||||||| ||||:|| |||| AUGAAAGUGGACAACAGCUAUCCUGGGUUUGUGUGGUGAU Kcmf1 rno-miR-352 236 264 AUGAUACGUU--------GGAUGAUGAGA || |||||| |||| ||||| GAC-AUGCAAAAGGCUCUCCUAAUACUCC Kcmf1 rno-miR-370 167 193 -UUGGUCCAAGGUG-GGGUCGUCCG- |||:| ||::|| :|:||||||: UAACUAAUUUUUACUUCUAGCAGGUA Kcmf1 rno-miR-376c 17 35 GCACU-UUAAAGGAGAUACAA || ||| ||||||:|| --AGACAAUGUCCUCUGUGC- Kcmf1 rno-miR-377 42 84 -GGUU---UUCAA-------CGG--------AAACACACUA |||| |||| ||: ||||||||:| GCCAAUGAAAGUGGACAACAGCUAUCCUGGGUUUGUGUGGUG Kcmf1 rno-miR-409-5p 197 221 GUUUCA-----ACGAGCCCAUUGGA- |:|| ||| ||||:|:|| -UAGGUAGCAGUGCA-GGGUGAUCUC Kcmf1 rno-miR-424 292 310 -AGGUUUUGUACUUAACGACGAC- ||:| ||||| ||||||| CUCUA----AUGAA--GCUGCUGU Kcmf1 rno-miR-503 203 244 -GUCAUG-----------AC-AAGGGCG---------ACGAU ||||:| || ||||:|: ||| GCAGUGCAGGGUGAUCUCUGCUUCCUGUACCUUGACAUGCA- Kcmf1 rno-miR-542-3p 91 117 -AAGUCA--AUAGUUAG-ACAGUGU- ||||| |:||| || |||:||| UUUCAGGUCUGUCACUCUUGUUACAU Kcmf1 rno-miR-542-5p 205 224 GCACUGUACUACUAGGGGCUC ||| || |:|||||:|:| AGUG-CAGGGUGAUCUCUGC- Kcmf1 rno-miR-96 14 48 UCGUUUUU--------ACACGAUC---ACGGUUU |||:| | ||||||: |||||| CGCAGACAAUGUCCUCUGUGCUGUAUUUGCCAAU Kcmf1 rno-miR-10a 189 215 gugUUUA-AGCC-UAG--AUGUCCCAu |||| | || | | |:|||||| ggtAAATGTAGGTAGCAGTGCAGGGTg Kcmf1 rno-miR-122a 242 264 ugUUUGUGGUAACAGUGUGAGGU ||| :|: | | |:|||||| caAAAGGCTCTCCTAATACTCCA Kcmf1 rno-miR-129 226 248 ucguucGGGUCUG-GCGUUUUUC ||: ||| :||||||:| cctgtaCCTTGACATGCAAAAGG Kcmf1 rno-miR-140* 64 83 ACAGGCACCAAGAUGGGACACCAu | ||| ||| |:|: |||||| TATCC-TGGGTTTG---TGTGGTg Kcmf1 rno-miR-143 195 221 AC-UCGAU-GUCACG---AAGUAGAGu || || || |||||| | ||||| TGTAGGTAGCAGTGCAGGGTGATCTCt Kcmf1 rno-miR-144 17 38 gaucaUGUAGUAGAUAUGACAU |::|| |||:|:||||| agacaATGTCCTCTGTGCTGTA Kcmf1 rno-miR-16 14 39 GCG---GUUAUA-AAUGCACGACgau ||| ||||:| | :|||||| CGCAGACAATGTCCTCTGTGCTGtat Kcmf1 rno-miR-18 215 236 aUAGACGUGAUCUACGUGGAAu |||| ::|| ||:||||| gATCTCTGCTTCCTGTACCTTg Kcmf1 rno-miR-195 18 39 CGGUUAUA-AAGACACGACgau | ||||:| ||||||||| GACAATGTCCTCTGTGCTGtat Kcmf1 rno-miR-20a* 195 212 ACAUUCA-CGAGCAUUACGUCa ||||:|| || |:||||| TGTAGGTAGC----AGTGCAGg Kcmf1 rno-miR-27b 15 35 CGUCUUGAAUCGGUGACACuu ||||| |: || ||||| GCAGACAATGTCCTCTGTGct Kcmf1 rno-miR-292-5p 55 79 gUUUUCUCG---GGGGUCAAACUCA | || ||| ||: :||||| || gACAACAGCTATCCTGGGTTTGTGT Kcmf1 rno-miR-298 14 33 cCUUCUUGUCGGGAGGAGACgg | || ||| : ||||||| cGCAG-ACA-ATGTCCTCTGtg Kcmf1 rno-miR-29b 64 86 uUGUGACUAAAGUUUACCACGAu |: |||: ||:: :||||| | tATCCTGGGTTTGTGTGGTGATt Kcmf1 rno-miR-329 292 314 uuuuuccaaUCGAC-CCACACAa ||||| |||||| ctctaatgaAGCTGCTGTGTGTa Kcmf1 rno-miR-331 194 215 aAGAUCCUAUC--CGGGUCCCcg | |||| ||| |: ||||| aTGTAGG-TAGCAGTGCAGGGtg Kcmf1 rno-miR-336 193 216 ucugAUCUAU--AC-CUUCCCACU |||:|| | | ||||||| aatgTAGGTAGCAGTGCAGGGTGA Kcmf1 rno-miR-338 15 38 aGU-UGUUUUAGUGACUACGACcu || |||| :|| : :||||| gCAGACAATGTCCTCTGTGCTGta Kcmf1 rno-miR-349 196 216 ucUCCAAUUCUGU--CGUCCCgac |||| || || |||||| gtAGGT--AG-CAGTGCAGGGtga Kcmf1 rno-miR-370 168 191 UUGGUCCAAGGUG-GGGUCGUCCg |||:| ||::|| :|:|||||| AACTAATTTTTACTTCTAGCAGGt Kcmf1 rno-miR-376c 14 35 GC-ACU-UUAAAGGAGAUACaa || || ||| ||||||:|| CGCAGACAATGTCCTCTGTGct Kcmf1 rno-miR-377 56 82 gGUUUUC-AACGG----AAACACACUA ||| || | || ||||||||:| aCAACAGCTATCCTGGGTTTGTGTGGT Kcmf1 rno-miR-409-5p 202 219 guuUCAACGAGCCCAUUGGA || ||| ||||:|:|| agcAG-TGC-AGGGTGATCT Kcmf1 rno-miR-424 285 308 AGGUUUUG----UACUUAACGACGAC |: ||| | ||||| ||||||| TTGAAATCTCTAATGAA--GCTGCTG Kcmf1 rno-miR-503 204 225 GUCAUG--ACAAGGGCGACGAu ||||:| || :| ||||| CAGTGCAGGGTGATCTCTGCTt Kcmf1 rno-miR-542-3p 86 106 AAGUCAAUAGU-UAGACAGUGu | :| || ||| :|||||||| TGTAATT-TCAGGTCTGTCACt Kcmf1 rno-miR-542-5p 205 224 gCACUGUACUACUAGGGGCuc ||| || |:|||||:|:| aGTG-CAGGGTGATCTCTGct Kcmf1 rno-miR-96 22 47 ucguuuuuACACGAU---CACGGUUu ||||||: |||||| atgtcctcTGTGCTGTATTTGCCAAt Kcmf1 rno-miR-542-3p 99 106 AAGUCAAUAG----------------------UUAGACAGUGU ::|||||||| UAUCCUGGGUUUGUGUGGUGAUUGUAAUUUCAGGUCUGUCACU

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Kcmf1 RAID00976950 rno-miR-182 miRNA MIMAT0005300 Kcmf1 mRNA 684322 Prediction 0.2202 Kcmf1 RAID01299181 rno-miR-185-3p miRNA MIMAT0017142 Kcmf1 mRNA 684322 Prediction 0.1828 Kcmf1 RAID01630960 rno-miR-6216 miRNA MIMAT0024856 Kcmf1 mRNA 684322 Prediction 0.1828 Kcmf1 RAID01685261 rno-miR-503-3p miRNA MIMAT0017224 Kcmf1 mRNA 684322 Prediction 0.1828 Kcmf1 RAID02084658 rno-miR-664-3p miRNA MIMAT0003382 Kcmf1 mRNA 684322 Prediction 0.1828 Kcmf1 RAID02142001 rno-miR-3559-5p miRNA MIMAT0017827 Kcmf1 mRNA 684322 Prediction 0.1828 Kcmf1 RAID02488670 rno-miR-672-3p miRNA MIMAT0017312 Kcmf1 mRNA 684322 Prediction 0.1828 Kcmf1 RAID02921811 rno-miR-383-3p miRNA MIMAT0017197 Kcmf1 mRNA 684322 Prediction 0.1828 Kcmf1 RAID03037343 rno-miR-542-3p miRNA MIMAT0003179 Kcmf1 mRNA 684322 Prediction 0.1828 Kcmf1 RAID03081766 rno-miR-411-3p miRNA MIMAT0017304 Kcmf1 mRNA 684322 Prediction 0.1828 Kcmf1 RAID04050848 rno-miR-3569 miRNA MIMAT0017849 Kcmf1 mRNA 684322 Prediction 0.1828