DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004652 rno-miR-342-5p 308384 Sae1 gaguuagugucuaucGUGGGGa |||||| accaagcugucuuuuCACCCCa 2 8 434 455 [rn4:1:76585219-76585240:-] 0.5283 120 6 -12.86 -0.1726 MIMAT0000614 rno-miR-151* 308384 Sae1 ggAGUUCCUCGGAGU-CAGAUc |||||| | || ||||| aaUCAAGG-CCAACAGGUCUAu 2 20 551 571 [rn4:1:76585103-76585123:-] 0.5283 121 0 -15.19 -0.3785 MIMAT0004708 rno-miR-9* 308384 Sae1 ugAAAGCCAAUAGAUC-GAAAUa |||:||||:|| || ||||| ucUUUUGGUUGUC-AGCCUUUAa 2 21 410 431 [rn4:1:76585243-76585264:-] 0.5283 142 0 -21.65 -0.5216 MIMAT0004708 rno-miR-9* 308384 Sae1 ugaaaGCCAAUAGAUCGAA-AUa | ||||| ||||| || aggggCCGUUAUGCAGCUUGUAa 2 18 489 511 [rn4:1:76585163-76585185:-] 0.5283 125 0 -8.91 -0.5902 MIMAT0004719 rno-miR-30c-1* 308384 Sae1 ccUCAUUUG-UUGGGAG-AGGGUc || |:|| |: ::|| ||||| caAGAAGACGAGGUUUCAUCCCAa 2 21 76 99 [rn4:1:76585575-76585598:-] 0.5019 123 0 -16.34 -0.5837 MIMAT0004721 rno-miR-30b-3p 308384 Sae1 cugCAUUUG--UAGGUGUAGGGUc | |:|| : :: ||||||| caaGAAGACGAGGUUUCAUCCCAa 2 20 76 99 [rn4:1:76585575-76585598:-] 0.5019 142 7 -17.23 -0.7506 MIMAT0005442 rno-miR-30c-2* 308384 Sae1 ucUCAUUUG-UCGGAAG-AGGGUc || |:|| || :||| ||||| caAGAAGACGAGGUUUCAUCCCAa 2 21 76 99 [rn4:1:76585575-76585598:-] 0.5019 131 0 -18.23 -0.5801 MIMAT0004739 rno-miR-204* 308384 Sae1 uuGCAGGGAAAC--GGAAGG-GUCg | ||:: ||| |||||| ||| gcCCUCUUCUUGGCCCUUCCUCAGu 2 21 344 368 [rn4:1:76585306-76585330:-] 0.5283 127 0 -21.90 -0.2654 MIMAT0003202 rno-miR-382* 308384 Sae1 uucaCAACAGGCA---CUUACUAa |||||:| | ||||||| cuugGUUGUUCAUAAGGAAUGAUa 2 18 752 775 [rn4:1:76584899-76584922:-] 0.5241 156 7 -15.72 -0.8318 MIMAT0005280 rno-miR-743b 308384 Sae1 agAUAAGUCAUACCACAGAAAg || | | | | ||||||| uuUAAUGACCAAGCUGUCUUUu 2 21 427 448 [rn4:1:76585226-76585247:-] 0.5283 152 7 -7.68 -0.2702 MIMAT0005280 rno-miR-743b 308384 Sae1 agauaaGUC-AUACCACAGAAAg ||| |:| ||||||| cgcaccCAGUUGUCAUGUCUUUu 2 17 393 415 [rn4:1:76585259-76585281:-] 0.5283 151 7 -12.11 -0.3955 MIMAT0005285 rno-miR-877 308384 Sae1 gggACGCGGUAGAGGAG-AUg | | ||| :||||| || augUCCCCCAGUUCCUCAUAu 2 18 644 664 [rn4:1:76585010-76585030:-] 0.5241 121 0 -17.38 -0.1241 MIMAT0005286 rno-miR-878 308384 Sae1 agaUGGGUCAUACCACAGUACg ||||||| ||||||| cgcACCCAGU----UGUCAUGu 2 20 393 410 [rn4:1:76585264-76585281:-] 0.5283 154 7 -22.25 -0.6453 MIMAT0005322 rno-miR-532-5p 308384 Sae1 ugucAGGA-UGUGAGUUCCGUAc |||| | | ||||||| ccuaUCCUCUCUAUGAAGGCAUg 2 19 31 53 [rn4:1:76585621-76585643:-] 0.5102 149 7 -19.81 -0.2842 MIMAT0012827 rno-miR-1224 308384 Sae1 gaGGUGGA-GGGGUC-AGGAGUg |||: | |||||| |||||| caCCAUGUCCCCCAGUUCCUCAu 2 20 640 662 [rn4:1:76585012-76585034:-] 0.5241 138 6 -31.16 -0.1894 MIMAT0012835 rno-miR-615 308384 Sae1 cuaggcucgugGCCCCUGGGGg :||||||||| caggacaugggUGGGGACCCCa 2 12 266 287 [rn4:1:76585387-76585408:-] 0.5019 151 7 -30.11 -0.1050 MIMAT0000553 rno-miR-324-5p 308384 Sae1 ugugGUUACGGGAUC-----CCCUACGc :||| ||||| ||||||| cuugUAAU--CCUAGAAAUUGGGAUGCc 2 20 505 530 [rn4:1:76585144-76585169:-] 0.5283 143 7 -19.29 -0.4157 MIMAT0000560 rno-miR-326 308384 Sae1 ugaccuccuucCCGGGUCUCc ||||||||| uggggaccccaGGCCCAGAGa 2 11 277 297 [rn4:1:76585377-76585397:-] 0.5019 150 7 -25.25 -0.1435 MIMAT0000566 rno-miR-329 308384 Sae1 uuuuuccaaucGAC-CCACACAa ||| ||||||| ---------gcCUGAGGUGUGUg 2 12 1 14 [rn4:1:76585660-76585673:-] 0.6781 146 7 -15.30 -0.3792 MIMAT0004641 rno-miR-330 308384 Sae1 cggaUUCU-GUGUCCGGGUCUCu ::|| | ||||||||||| ggugGGGACCCCAGGCCCAGAGa 2 19 275 297 [rn4:1:76585377-76585399:-] 0.5019 165 7 -31.49 -0.1380 MIMAT0000606 rno-miR-7a 308384 Sae1 uguuGUUUUAGUG-AUCAGAAGGu |:|: | :| |:||||||| gggcCGAGUUGGCUUGGUCUUCCu 2 20 689 712 [rn4:1:76584962-76584985:-] 0.5241 154 7 -18.03 -0.1786 MIMAT0000775 rno-let-7b 308384 Sae1 uuGGUGUGUUGGAUGAU-GGAGu |||| |::| ||| |||| cgCCACUGAGUCACCUAUCCUCu 2 21 18 40 [rn4:1:76585634-76585656:-] 0.5102 124 0 -17.91 -0.2799 MIMAT0000780 rno-miR-7b 308384 Sae1 uguuGUUUUAGUG-UUCAGAAGGu |:|: | :| :||||||| gggcCGAGUUGGCUUGGUCUUCCu 2 20 689 712 [rn4:1:76584962-76584985:-] 0.5241 146 7 -16.24 -0.1786 MIMAT0000851 rno-miR-145 308384 Sae1 ucccuAAGGACCCUUUUGAC-CUg | ||| |||:||||| || acuucUGCCU-GGAGAACUGAGAg 2 19 319 341 [rn4:1:76585333-76585355:-] 0.5283 128 0 -19.96 -0.1221 MIMAT0000853 rno-miR-150 308384 Sae1 gugaccauguucccAACCCUCu ||||||| cccaguuccucauaUUGGGAGc 2 9 650 671 [rn4:1:76585003-76585024:-] 0.5241 140 7 -11.29 -0.1337 MIMAT0000867 rno-miR-192 308384 Sae1 ccGACAGUUAAGUAUCCAGUc || || | :|||||||| gaCU-UCUUUCUAUAGGUCAa 2 20 236 255 [rn4:1:76585419-76585438:-] 0.5019 153 7 -14.42 -0.5405 MIMAT0000872 rno-miR-199a-5p 308384 Sae1 cuUGUCCAUCAGAC--UUGU-GACCc || || :| ||| |||| |||| gcACUGG-GGACUGACAACACCUGGg 2 22 166 190 [rn4:1:76585484-76585508:-] 0.5019 122 0 -20.76 -0.2919 MIMAT0000878 rno-miR-205 308384 Sae1 gucugaggccaccuUACUUCCu ||||||| caccuauccucucuAUGAAGGc 2 9 29 50 [rn4:1:76585624-76585645:-] 0.5102 140 7 -12.18 -0.3843 MIMAT0003118 rno-miR-215 308384 Sae1 cagacaguuuaGUAUCCAGUa :|||||||| ggacuucuuucUAUAGGUCAa 2 11 235 255 [rn4:1:76585419-76585439:-] 0.5019 146 7 -14.03 -0.5441 MIMAT0003196 rno-miR-376b-3p 308384 Sae1 uucaccuacaaGGAGAUACUa :|||||||| gucaccuauccUCUCUAUGAa 2 11 27 47 [rn4:1:76585627-76585647:-] 0.5102 146 7 -11.46 -0.3506 MIMAT0005335 rno-miR-758 308384 Sae1 ccaauCACCUGGUCCAGUGUUu ||| : :| ||||||| cccgcGUGUGAUA-GUCACAAg 2 18 134 154 [rn4:1:76585520-76585540:-] 0.5019 147 7 -15.46 -0.1044

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G043185 Sae1 Rattus norvegicus 308384

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Sae1 RAID00367068 rno-miR-329-3p miRNA MIMAT0000566 Sae1 mRNA 308384 Prediction 0.1828 Sae1 RAID00430445 rno-miR-376b-3p miRNA MIMAT0003196 Sae1 mRNA 308384 Prediction 0.1828 Sae1 RAID00665046 rno-miR-7a-5p miRNA MIMAT0000606 Sae1 mRNA 308384 Prediction 0.1828 Sae1 RAID00741072 rno-miR-7b miRNA MIMAT0000780 Sae1 mRNA 308384 Prediction 0.1828 Sae1 RAID00970921 rno-miR-192-5p miRNA MIMAT0000867 Sae1 mRNA 308384 Prediction 0.1828 Sae1 RAID00995020 rno-miR-382-3p miRNA MIMAT0003202 Sae1 mRNA 308384 Prediction 0.1828 Sae1 RAID01334978 rno-miR-145-5p miRNA MIMAT0000851 Sae1 mRNA 308384 Prediction 0.1828 Sae1 RAID01452764 rno-miR-878 miRNA MIMAT0005286 Sae1 mRNA 308384 Prediction 0.1828 Sae1 RAID01717272 rno-miR-324-5p miRNA MIMAT0000553 Sae1 mRNA 308384 Prediction 0.1828 Sae1 RAID02148142 rno-miR-100-3p miRNA MIMAT0017112 Sae1 mRNA 308384 Prediction 0.1828 Sae1 RAID02341941 rno-miR-150-5p miRNA MIMAT0000853 Sae1 mRNA 308384 Prediction 0.1828 Sae1 RAID02629407 rno-miR-758-3p miRNA MIMAT0005335 Sae1 mRNA 308384 Prediction 0.1828 Sae1 RAID02839194 rno-let-7b-5p miRNA MIMAT0000775 Sae1 mRNA 308384 Prediction 0.1828 Sae1 RAID02949394 rno-miR-326-3p miRNA MIMAT0000560 Sae1 mRNA 308384 Prediction 0.1828 Sae1 RAID03190678 rno-miR-199a-5p miRNA MIMAT0000872 Sae1 mRNA 308384 Prediction 0.1828 Sae1 RAID03208781 rno-miR-330-5p miRNA MIMAT0004641 Sae1 mRNA 308384 Prediction 0.1828 Sae1 RAID03350225 rno-miR-770-3p miRNA MIMAT0017317 Sae1 mRNA 308384 Prediction 0.1828 Sae1 RAID03545413 rno-miR-205 miRNA MIMAT0000878 Sae1 mRNA 308384 Prediction 0.2202 Sae1 RAID03887763 rno-miR-215 miRNA MIMAT0003118 Sae1 mRNA 308384 Prediction 0.1828 Sae1 RAID04045600 rno-miR-743b-3p miRNA MIMAT0005280 Sae1 mRNA 308384 Prediction 0.1828