DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000547 rno-miR-322* 307905 Usp10 acaacgUCGCG-AAGUACAAa | ||| |||||||| uuucaaAUCGCAUUCAUGUUc 2 15 611 631 [rn4:19:50244498-50244518:+] 0.6504 153 7 -13.98 -0.6056 MIMAT0004639 rno-miR-325-3p 307905 Usp10 aacuauccuccacgAGUUAUUu ||||||| aaaguugucacccgUCAAUAAa 2 9 749 770 [rn4:19:50244636-50244657:+] 0.6504 140 7 -6.29 -0.6568 MIMAT0000598 rno-miR-347 307905 Usp10 acccgcuggGUCUCCCUGu ||||||||| aacagugggCAGAGGGACg 2 11 644 662 [rn4:19:50244531-50244549:+] 0.6504 150 7 -24.83 -0.3281 MIMAT0000604 rno-miR-350 307905 Usp10 cacuuucacauacccgAAACACUu ||||||| cagcagcucuuguaaaUUUGUGAa 2 9 293 316 [rn4:19:50244180-50244203:+] 0.6927 140 7 -9.82 -1.3178 MIMAT0004709 rno-miR-10a-3p 307905 Usp10 auAAGGG--GAUCUAUGCUUAAAc ||||: | :|| |||||||| ggUUCCUAACAGGAAACGAAUUUu 2 21 476 499 [rn4:19:50244363-50244386:+] 0.6504 163 7 -16.30 -1.2070 MIMAT0004709 rno-miR-10a-3p 307905 Usp10 auaaggggAUCUAUGCUUAAAc |: | |:|||||| uaaauuugUGAAAAUGAAUUUu 2 15 305 326 [rn4:19:50244192-50244213:+] 0.6927 134 6 -5.87 -0.2369 MIMAT0000783 rno-miR-10b 307905 Usp10 ugUGUUUAA--GCCAA-GA-UGUCCc |:| :|| :|||| || ||||| aaAUAUGUUGCUGGUUCCUAACAGGa 2 21 464 489 [rn4:19:50244351-50244376:+] 0.6504 122 0 -15.08 -1.0825 MIMAT0004719 rno-miR-30c-1* 307905 Usp10 ccuCAUUUGUUGGG--AGAGGGUc ||: |:|| | ||||||| cguGUGUCCGACGCUGUCUCCCAu 2 20 8 31 [rn4:19:50243895-50243918:+] 0.4866 150 7 -19.21 -1.1684 MIMAT0004719 rno-miR-30c-1* 307905 Usp10 ccucauuuguugggAGAGGGUc ||||||| cgcugucucccauaUCUCCCAg 2 9 19 40 [rn4:19:50243906-50243927:+] 0.4866 140 7 -20.01 -0.2840 MIMAT0005442 rno-miR-30c-2* 307905 Usp10 ucucauUUGUCGGAAGAGGGUc :|| ||: ||||||| guguccGAC-GCUGUCUCCCAu 2 17 11 31 [rn4:19:50243898-50243918:+] 0.4866 150 7 -16.18 -1.1684 MIMAT0005442 rno-miR-30c-2* 307905 Usp10 ucucauuugucggaAGAGGGUc ||||||| cgcugucucccauaUCUCCCAg 2 9 19 40 [rn4:19:50243906-50243927:+] 0.4866 140 7 -18.91 -0.2840 MIMAT0000831 rno-miR-126* 307905 Usp10 gcgcAUGGUUUUCAUUAUUAc | |: ||| |||||| ucuuUCCUUAAAAAAAUAAUu 2 18 328 348 [rn4:19:50244215-50244235:+] 0.6351 125 6 -3.33 -0.3870 MIMAT0000847 rno-miR-142-5p 307905 Usp10 ucAUCACGAAAGA-UGAAAUAc |:| | || | ||||||| gcUGGCGGAUUGUAACUUUAUc 2 20 577 598 [rn4:19:50244464-50244485:+] 0.6504 150 7 -5.91 -0.5524 MIMAT0000894 rno-miR-291a-5p 307905 Usp10 ucucucccGGAGGU--GAAACUAc |||::| :|||||| uccuuuacCCUUUAGUUUUUGAUa 2 15 371 394 [rn4:19:50244258-50244281:+] 0.6504 133 6 -10.18 -0.2309 MIMAT0003116 rno-miR-501 307905 Usp10 aaagugggucccugUUUCCUaa |||||| uagcucuuacuucaAAAGGAga 3 9 429 450 [rn4:19:50244316-50244337:+] 0.6504 120 0 -8.70 -0.3421 MIMAT0003382 rno-miR-664 307905 Usp10 auccgacccCUCAUUUACUUAu | | |||||||| uguaaauuuGUGAAAAUGAAUu 2 14 303 324 [rn4:19:50244190-50244211:+] 0.6927 149 7 -6.23 -1.2172 MIMAT0005279 rno-miR-466c 307905 Usp10 guacauguacguguGUAGUGu |||||| uaauuuuuuuaauuCAUCACa 2 8 344 364 [rn4:19:50244231-50244251:+] 0.6139 120 6 -11.40 -0.3867 MIMAT0005324 rno-miR-598-5p 307905 Usp10 gaGCGUGGUA--GCCGUAGUGGCg || |:::| | :||||||| ggCGGAUUGUAACUUUAUCACCGu 2 21 580 603 [rn4:19:50244467-50244490:+] 0.6504 147 7 -19.21 -0.9183 MIMAT0005327 rno-miR-672 307905 Usp10 aguGUGUGUCAUGUGGU-UGGAGu :::: ||| ::||| ||||| ugcUGUGGAGUCUGCCACACCUCu 2 21 679 702 [rn4:19:50244566-50244589:+] 0.6504 124 0 -17.46 -0.3021 MIMAT0012824 rno-miR-513 307905 Usp10 uacuuucuguggaaGAACACUu :|||||| gcagcucuuguaaaUUUGUGAa 2 9 295 316 [rn4:19:50244182-50244203:+] 0.6927 124 6 -9.68 -0.4658 MIMAT0012832 rno-miR-568 307905 Usp10 cacacAUAUGUA-AAUAUGUa |:| | | ||||||| ugccaUGUCCCUGUUAUACAc 2 16 705 725 [rn4:19:50244592-50244612:+] 0.6504 146 7 -5.97 -0.3305 MIMAT0012841 rno-miR-675 307905 Usp10 ugacacccgggaAAGGCGUGGu | ||||||| uaguggaauaagUCCCGCACCa 2 11 273 294 [rn4:19:50244160-50244181:+] 0.6582 142 7 -22.66 -0.8439 MIMAT0012848 rno-miR-294 307905 Usp10 ucuaucccggagguAAAACUc |||||| cuuuacccuuuaguUUUUGAu 2 8 373 393 [rn4:19:50244260-50244280:+] 0.6504 120 6 -8.16 -0.1133 MIMAT0000575 rno-miR-335 307905 Usp10 uguaaaaagcaauaaCGAGAACu ||||||| agucccgcaccagcaGCUCUUGu 2 9 283 305 [rn4:19:50244170-50244192:+] 0.6582 140 7 -11.77 -0.8985 MIMAT0000579 rno-miR-148b-3p 307905 Usp10 uguUUCAAGACACUACGUG-ACu | |||||||| ||||| || uucAUGUUCUGUG-UGCACAUGa 2 20 623 644 [rn4:19:50244510-50244531:+] 0.6504 137 0 -24.18 -0.7423 MIMAT0000602 rno-miR-20a 307905 Usp10 gauggacgugauauucGUGAAAu |||||| uuuuuuuaauucaucaCACUUUc 2 8 347 369 [rn4:19:50244234-50244256:+] 0.6139 120 6 -5.60 -0.1438 MIMAT0000606 rno-miR-7a 307905 Usp10 uguUGUUUUAGUGAUCA-GAAGGu ||| |:| |||| ||||| uauACACAGU--GUAGUGCUUCCu 2 21 719 740 [rn4:19:50244606-50244627:+] 0.6504 121 0 -12.31 -0.3925 MIMAT0000606 rno-miR-7a 307905 Usp10 uguuguuuuagugaucAGAAGGu |||||| uuaauucaucacacuuUCUUCCu 2 8 352 374 [rn4:19:50244239-50244261:+] 0.6139 120 6 -13.44 -0.1940 MIMAT0000780 rno-miR-7b 307905 Usp10 uguuguuuUAGUGU-UCAGAAGGu |||||| |||||| uuuaauucAUCACACUUUCUUCCu 2 16 351 374 [rn4:19:50244238-50244261:+] 0.6139 126 6 -15.09 -0.1940 MIMAT0000786 rno-miR-17-5p 307905 Usp10 gauggacgugacauucGUGAAAc |||||| uuuuuuuaauucaucaCACUUUc 2 8 347 369 [rn4:19:50244234-50244256:+] 0.6139 120 6 -6.83 -0.1438 MIMAT0000794 rno-miR-24 307905 Usp10 gacaaggacgacuugACUCGGu |||||| gauaaaugacaaaaaUGAGCCa 2 8 391 412 [rn4:19:50244278-50244299:+] 0.6504 120 6 -14.39 -0.1699 MIMAT0000817 rno-miR-93 307905 Usp10 gauggacgugcuugucGUGAAAc |||||| uuuuuuuaauucaucaCACUUUc 2 8 347 369 [rn4:19:50244234-50244256:+] 0.6139 120 6 -7.49 -0.1467 MIMAT0000825 rno-miR-106b 307905 Usp10 uagacgugacagucGUGAAAu |||||| uuuuuaauucaucaCACUUUc 2 8 349 369 [rn4:19:50244236-50244256:+] 0.6139 120 6 -7.67 -0.1438 MIMAT0000842 rno-miR-136 307905 Usp10 agguAGUAGUUUUGUUUACCUCa || |:| |||| |||| uagcUC-UUACUUCAAAAGGAGa 2 20 429 450 [rn4:19:50244316-50244337:+] 0.6504 121 0 -9.89 -0.1257 MIMAT0000844 rno-miR-138 307905 Usp10 gccggACUAAGUGUUGUGGUCGa | | || | :||||||| uggaaUAAGUC-CCGCACCAGCa 2 19 276 297 [rn4:19:50244163-50244184:+] 0.6582 148 7 -18.11 -0.4917 MIMAT0000854 rno-miR-152 307905 Usp10 ggUUCAAGACAGUACGUG-ACu | ||||||| :||||| || ucAUGUUCUGU-GUGCACAUGa 2 20 624 644 [rn4:19:50244511-50244531:+] 0.6504 133 0 -23.39 -0.7708 MIMAT0000862 rno-miR-185 307905 Usp10 agUCCUUGACGGAAAGAGAGGu | |||:| :| |||:||| aaAUGAAUU--UUAUCUUUCCu 2 21 316 335 [rn4:19:50244203-50244222:+] 0.6927 137 0 -11.34 -0.1725 MIMAT0000876 rno-miR-203 307905 Usp10 gaucaccaggauuugUAAAGUg |||||| uaucaccgugaacagAUUUCAa 2 8 595 616 [rn4:19:50244482-50244503:+] 0.6504 120 6 -10.70 -0.1086 MIMAT0003211 rno-miR-20b-5p 307905 Usp10 uggacgugauacucGUGAAAc |||||| uuuuuaauucaucaCACUUUc 2 8 349 369 [rn4:19:50244236-50244256:+] 0.6139 120 6 -5.48 -0.1438

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G094244 Usp10 Rattus norvegicus 307905

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Usp10 RAID00333791 rno-miR-136-5p miRNA MIMAT0000842 Usp10 mRNA 307905 Prediction 0.1828 Usp10 RAID00622558 rno-miR-185-5p miRNA MIMAT0000862 Usp10 mRNA 307905 Prediction 0.1828 Usp10 RAID00648472 rno-miR-325-3p miRNA MIMAT0004639 Usp10 mRNA 307905 Prediction 0.2202 Usp10 RAID00657280 rno-miR-106b-5p miRNA MIMAT0000825 Usp10 mRNA 307905 Prediction 0.1828 Usp10 RAID00664680 rno-miR-7a-5p miRNA MIMAT0000606 Usp10 mRNA 307905 Prediction 0.1828 Usp10 RAID00936916 rno-miR-138-5p miRNA MIMAT0000844 Usp10 mRNA 307905 Prediction 0.2202 Usp10 RAID01050179 rno-miR-24-3p miRNA MIMAT0000794 Usp10 mRNA 307905 Prediction 0.1828 Usp10 RAID01362780 rno-miR-350 miRNA MIMAT0000604 Usp10 mRNA 307905 Prediction 0.1828 Usp10 RAID01475396 rno-miR-1912-5p miRNA MIMAT0017864 Usp10 mRNA 307905 Prediction 0.1828 Usp10 RAID01547918 rno-miR-152-3p miRNA MIMAT0000854 Usp10 mRNA 307905 Prediction 0.1828 Usp10 RAID01671247 rno-miR-335 miRNA MIMAT0000575 Usp10 mRNA 307905 Prediction 0.1828 Usp10 RAID01832567 rno-miR-203a-3p miRNA MIMAT0000876 Usp10 mRNA 307905 Prediction 0.1828 Usp10 RAID02010430 rno-miR-153-5p miRNA MIMAT0017135 Usp10 mRNA 307905 Prediction 0.1828 Usp10 RAID02229026 rno-miR-6325 miRNA MIMAT0025064 Usp10 mRNA 307905 Prediction 0.1828 Usp10 RAID02344717 rno-miR-148b-3p miRNA MIMAT0000579 Usp10 mRNA 307905 Prediction 0.1828 Usp10 RAID02572022 rno-miR-149-5p miRNA MIMAT0035726 Usp10 mRNA 307905 Prediction 0.1828 Usp10 RAID02718841 rno-miR-20a-5p miRNA MIMAT0000602 Usp10 mRNA 307905 Prediction 0.1828 Usp10 RAID02723803 rno-miR-7b miRNA MIMAT0000780 Usp10 mRNA 307905 Prediction 0.1828 Usp10 RAID02868018 rno-miR-598-5p miRNA MIMAT0005324 Usp10 mRNA 307905 Prediction 0.1828 Usp10 RAID03138741 rno-miR-672-3p miRNA MIMAT0017312 Usp10 mRNA 307905 Prediction 0.1828 Usp10 RAID03171641 rno-miR-93-5p miRNA MIMAT0000817 Usp10 mRNA 307905 Prediction 0.1828 Usp10 RAID03235484 rno-miR-20b-5p miRNA MIMAT0003211 Usp10 mRNA 307905 Prediction 0.1828 Usp10 RAID03369198 rno-miR-17-5p miRNA MIMAT0000786 Usp10 mRNA 307905 Prediction 0.1828