DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT004516 rno-miR-23a-3p Rattus norvegicus Trim63 140939 Rattus norvegicus Luciferase reporter assay//qRT-PCR//Western blot Functional MTI 19574461 MIRT004512 rno-miR-27a-3p Rattus norvegicus Trim63 140939 Rattus norvegicus Luciferase reporter assay Non-Functional MTI 19574461

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004645 rno-miR-148b-5p 140939 Trim63 ggacucACAUAUUGUCUUGAAg | |:|| ||||||| gugcuuUUUGUACAAGAACUUu 2 17 298 319 [rn4:5:153073509-153073530:+] 0.6284 152 7 -11.76 -1.0526 MIMAT0004655 rno-miR-345-3p 140939 Trim63 agaGGUCUGGGGA---UCAAG-UCCc :::||:|:|| ||||| ||| cagUUGGAUCUCUAUGAGUUCGAGGc 2 20 589 614 [rn4:5:153073800-153073825:+] 0.5140 122 0 -21.84 -0.1480 MIMAT0000599 rno-miR-349 140939 Trim63 ucucCAAUUCUGUCGUCCC-GAc | | ||| ||||||| || cucuGCUCAGAGAGCAGGGACUa 2 19 115 137 [rn4:5:153073326-153073348:+] 0.5851 130 0 -18.41 -0.2895 MIMAT0000603 rno-miR-20a* 140939 Trim63 acauuCACGAGCA-UUACGUCa || :| | ||||||| auguuGUUUUAAUAAAUGCAGa 2 17 510 531 [rn4:5:153073721-153073742:+] 0.5518 143 7 -10.57 -1.0880 MIMAT0000604 rno-miR-350 140939 Trim63 caCUUUCACAUACCCGAAACACuu |::|| | | | |||||| ugGGGAGAGGACUGAAUUUGUGuu 3 23 484 507 [rn4:5:153073695-153073718:+] 0.5941 134 0 -12.78 -0.1000 MIMAT0004705 rno-let-7b* 140939 Trim63 cccuucCGUCAUCCAACAUAUc |:| | ||||||| auuuuuGUAUAAACUUGUAUAu 2 17 263 284 [rn4:5:153073474-153073495:+] 0.6627 144 7 -3.78 -0.9735 MIMAT0004705 rno-let-7b* 140939 Trim63 cccUUCCGUCAUCCAACAUAUc || |:: | ||||||| uaaAAUGUGAU-UUUUGUAUAa 2 20 254 274 [rn4:5:153073465-153073485:+] 0.6627 141 7 -4.24 -1.3180 MIMAT0004705 rno-let-7b* 140939 Trim63 cccUUCCGUCAUCCAACAUAUc || | | || ||||||: caaAAUGAAAUAUUUUGUAUGu 2 20 229 250 [rn4:5:153073440-153073461:+] 0.6627 139 0 -3.72 -0.2702 MIMAT0003152 rno-miR-22* 140939 Trim63 auuuCGAACGGUGACUUCUUGa |||| :::: |||||| ugguGCUUUUUGUACAAGAACu 2 19 296 317 [rn4:5:153073507-153073528:+] 0.6284 126 6 -11.49 -0.1271 MIMAT0004739 rno-miR-204* 140939 Trim63 uugcagggaaacggaAGGGUCg |||||| auguauccaaaaaugUCCCAGg 2 8 188 209 [rn4:5:153073399-153073420:+] 0.6627 120 6 -16.26 -0.1508 MIMAT0003162 rno-miR-1* 140939 Trim63 ccCAUGUAUUUCUU-------CAUACAcg ||:|| || ||| |||||| ugGUGCAAAAUGAAAUAUUUUGUAUGUuu 3 21 224 252 [rn4:5:153073435-153073463:+] 0.6627 127 0 -12.22 -0.2805 MIMAT0003195 rno-miR-376b-5p 140939 Trim63 auUGGUAUCUUCCUUAUAGGUg || || |:| :|||||| acACGAUUGGAAAUGUAUCCAa 2 21 176 197 [rn4:5:153073387-153073408:+] 0.6627 140 6 -12.21 -0.1879 MIMAT0003205 rno-miR-409-3p 140939 Trim63 ccccaaguGGCUCGUUGUAa | |:||||||| agaccagcCAGGGCAACAUa 2 13 640 659 [rn4:5:153073851-153073870:+] 0.5140 148 7 -15.77 -0.1453 MIMAT0003382 rno-miR-664 140939 Trim63 aucCGACCCCUCAUUUACUUau |:||| | ||||||| uacGUUGGUG-CAAAAUGAAau 3 20 219 239 [rn4:5:153073430-153073450:+] 0.6627 133 0 -9.82 -0.1570 MIMAT0003382 rno-miR-664 140939 Trim63 auccgaccccucaUUUACUUau ||||||| cucaaaaauaaaaAAAUGAAaa 3 10 674 695 [rn4:5:153073885-153073906:+] 0.5140 125 0 -4.02 -0.5168 MIMAT0005280 rno-miR-743b 140939 Trim63 agAUAAGUCAUACCACAGAAAg ||||: ||| |||:||| aaUAUUUUGUA---UGUUUUUa 2 21 237 255 [rn4:5:153073448-153073466:+] 0.6627 140 0 -7.29 -0.1108 MIMAT0005321 rno-miR-500 140939 Trim63 acuuGGGAACGGGUCCACGUaa :::|| | : |||||| cacuUUUUUACGUUGGUGCAaa 3 19 211 232 [rn4:5:153073422-153073443:+] 0.6627 130 0 -13.04 -0.3278 MIMAT0005338 rno-miR-770 140939 Trim63 gcaccgggucugugcACCACGa |||||| gacacuuuuuuacguUGGUGCa 2 8 209 230 [rn4:5:153073420-153073441:+] 0.6627 120 6 -16.95 -0.1866 MIMAT0005338 rno-miR-770 140939 Trim63 gcaccgggucugugcACCACGa |||||| auauguaugccaauuUGGUGCu 2 8 281 302 [rn4:5:153073492-153073513:+] 0.6627 120 6 -16.14 -0.1937 MIMAT0012831 rno-miR-544 140939 Trim63 cuCGA-ACGAUU-UUUACGUCUUa |:| | :||| |||||||||| auGUUGUUUUAAUAAAUGCAGAAg 2 21 510 533 [rn4:5:153073721-153073744:+] 0.5518 166 7 -15.04 -0.5599 MIMAT0012848 rno-miR-294 140939 Trim63 ucuaucccggagGUAAAACuc :|||||| ugcaaaaugaaaUAUUUUGua 3 10 227 247 [rn4:5:153073438-153073458:+] 0.6627 121 0 -9.42 -0.3026 MIMAT0000600 rno-miR-129 140939 Trim63 cguucgggucugGCGUUUUuc :|||||| uuuuuacguuggUGCAAAAug 3 10 215 235 [rn4:5:153073426-153073446:+] 0.6627 121 0 -7.37 -0.1966 MIMAT0000615 rno-miR-101b 140939 Trim63 aagucgauaGUGUCAUGACAu || ||||||| agaaaggggCAAUGUACUGUa 2 13 441 461 [rn4:5:153073652-153073672:+] 0.5941 144 7 -12.38 -0.7916 MIMAT0000792 rno-miR-23a 140939 Trim63 ccUUUAGGGACCGUUACACUa | :|:::| ||||||| guAUGUUUUU-AAAAUGUGAu 2 20 245 264 [rn4:5:153073456-153073475:+] 0.6627 141 7 -10.74 -1.3149 MIMAT0000793 rno-miR-23b 140939 Trim63 ccAUUAGGGACCGUUACACUa || :::| ||||||| ugUAUGUUUUUAAAAUGUGAu 2 20 244 264 [rn4:5:153073455-153073475:+] 0.6627 143 7 -12.71 -1.3149 MIMAT0000795 rno-miR-25 140939 Trim63 agucuggcUCUGUUCACGUUac | :: :|||||| acuuuuuuACGUUGGUGCAAaa 3 15 212 233 [rn4:5:153073423-153073444:+] 0.6627 122 0 -9.42 -0.2059 MIMAT0000801 rno-miR-29b 140939 Trim63 uuGUGACUAAAGUU-UACCACGAu :|: || ||| ||||||| uaUAUGUAUGCCAAUUUGGUGCUu 2 22 280 303 [rn4:5:153073491-153073514:+] 0.6627 148 7 -14.77 -1.2032 MIMAT0000801 rno-miR-29b 140939 Trim63 uuGUGACUAAAGUUUACCACGau |||| ||| : |||||| gaCACUUUUUUACGUUGGUGCaa 3 22 209 231 [rn4:5:153073420-153073442:+] 0.6627 141 0 -17.46 -0.2307 MIMAT0000802 rno-miR-29a 140939 Trim63 auuggcuaaagucuACCACGAu ||||||| uauguaugccaauuUGGUGCUu 2 9 282 303 [rn4:5:153073493-153073514:+] 0.6627 140 7 -13.33 -1.2032 MIMAT0000802 rno-miR-29a 140939 Trim63 auUGGCUAAAGUCUACCACGau ||: ||| | |||||| acACUUUUUUACGUUGGUGCaa 3 21 210 231 [rn4:5:153073421-153073442:+] 0.6627 136 0 -11.51 -0.2307 MIMAT0000803 rno-miR-29c 140939 Trim63 auuggcUAAAGUU-UACCACGAu || ||| ||||||| auauguAUGCCAAUUUGGUGCUu 2 17 281 303 [rn4:5:153073492-153073514:+] 0.6627 147 7 -14.57 -1.2032 MIMAT0000803 rno-miR-29c 140939 Trim63 auUGGCUAAAGUUUACCACGau ||: ||| : |||||| acACUUUUUUACGUUGGUGCaa 3 21 210 231 [rn4:5:153073421-153073442:+] 0.6627 132 0 -11.41 -0.2307 MIMAT0000811 rno-miR-32 140939 Trim63 acGUUGAAUCAU-UA--CACGUUau || :|| || :| |||||| gaCACUUUUUUACGUUGGUGCAAaa 3 21 209 233 [rn4:5:153073420-153073444:+] 0.6627 126 0 -9.72 -0.2021 MIMAT0000816 rno-miR-92a 140939 Trim63 guccggcccuguUCACGUUau :|||||| cuuuuuuacguuGGUGCAAaa 3 10 213 233 [rn4:5:153073424-153073444:+] 0.6627 121 0 -8.70 -0.2059 MIMAT0000818 rno-miR-96 140939 Trim63 ucguuuuuacacgaucACGGUUu |||||| uaaacuuguauauguaUGCCAAu 2 8 272 294 [rn4:5:153073483-153073505:+] 0.6627 120 6 -9.62 -0.1106 MIMAT0000823 rno-miR-101a 140939 Trim63 aagucaauaGUGUCAUGACAu || ||||||| agaaaggggCAAUGUACUGUa 2 13 441 461 [rn4:5:153073652-153073672:+] 0.5941 144 7 -13.46 -0.7989 MIMAT0000851 rno-miR-145 140939 Trim63 ucccuaaggacccUUUUGACCUg |:||||||| -------------AGAACUGGAu 2 11 1 10 [rn4:5:153073212-153073221:+] 0.5851 146 7 -13.40 -0.6241 MIMAT0003122 rno-miR-370 140939 Trim63 uuggUC-CAAGGUGGGGUC-GUCCg || |||||| |||| |||| auggAGAGUUCCAGACCAGCCAGGg 2 20 628 652 [rn4:5:153073839-153073863:+] 0.5140 134 0 -26.05 -0.2570 MIMAT0003123 rno-miR-377 140939 Trim63 gguuuucAACGGAAACACACUa | |:| |||||||| ucaugccUGGUCAUUGUGUGAc 2 16 327 348 [rn4:5:153073538-153073559:+] 0.5941 155 7 -16.03 -0.3074 MIMAT0003193 rno-miR-494 140939 Trim63 uccaaAGGGCACAUACAAAGu | :: |||||||||: ugaaaUAUUUUGUAUGUUUUu 2 17 234 254 [rn4:5:153073445-153073465:+] 0.6627 140 0 -9.70 -0.1846 MIMAT0003196 rno-miR-376b-3p 140939 Trim63 uucacCUACAAGGAGAUACUa | || :|||||||| aggcaGUUGGAUCUCUAUGAg 2 17 586 606 [rn4:5:153073797-153073817:+] 0.5140 152 7 -16.85 -0.1636 MIMAT0003199 rno-miR-381 140939 Trim63 cucucgaacggGAACAUAu ||||||| uuuuguauaaaCUUGUAUa 2 9 265 283 [rn4:5:153073476-153073494:+] 0.6627 140 7 -11.75 -1.3193 MIMAT0003199 rno-miR-381 140939 Trim63 cucucgaAC-GGGAACAUAu || :::|||||| uaaaaugUGAUUUUUGUAUa 2 13 254 273 [rn4:5:153073465-153073484:+] 0.6627 127 6 -8.70 -0.4245 MIMAT0003199 rno-miR-381 140939 Trim63 cucucgaacgGGAACAUAu ::|||||| aaaugaaauaUUUUGUAUg 2 10 231 249 [rn4:5:153073442-153073460:+] 0.6627 125 6 -8.04 -0.3853 MIMAT0003210 rno-miR-363 140939 Trim63 augucuaccuauggCACGUUaa |||||| acuuuuuuacguugGUGCAAaa 3 9 212 233 [rn4:5:153073423-153073444:+] 0.6627 120 0 -6.98 -0.2059 MIMAT0005284 rno-miR-874 140939 Trim63 agcCAGGG--AGCCCGGUCCCGUc ||:|| | ||||||||| agaGUUCCAGACCAGCCAGGGCAa 2 20 632 655 [rn4:5:153073843-153073866:+] 0.5140 154 7 -24.51 -0.4483 MIMAT0005300 rno-miR-182 140939 Trim63 gccacacucaagaugguaACGGUUu |||||| uauaaacuuguauauguaUGCCAAu 2 8 270 294 [rn4:5:153073481-153073505:+] 0.6627 120 6 -10.78 -0.1128 MIMAT0005311 rno-miR-410 140939 Trim63 uguccggUAGACACAAUAUAa ||:|||||||||| ggacugaAUUUGUGUUAUAUg 2 15 492 512 [rn4:5:153073703-153073723:+] 0.5941 166 7 -15.49 -0.9751 MIMAT0005320 rno-miR-495 140939 Trim63 uuCUUCACGUGGUACAAACAAa ||| | |:: ||| |||| auGAAAU--AUUUUGUAUGUUu 2 21 233 252 [rn4:5:153073444-153073463:+] 0.6627 121 0 -6.76 -0.1044 MIMAT0005335 rno-miR-758 140939 Trim63 ccaAUCAC-CUGGUC-----CAGUGUUu | ||| |||||| ||||||| ucaUUGUGUGACCAGCGAUUGUCACAAa 2 20 337 364 [rn4:5:153073548-153073575:+] 0.5941 153 7 -23.29 -0.7515 MIMAT0005340 rno-miR-92b 140939 Trim63 ccuccggcccUGC--UCACGUUau ||| :|||||| acacuuuuuuACGUUGGUGCAAaa 3 13 210 233 [rn4:5:153073421-153073444:+] 0.6627 123 0 -10.56 -0.2059

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G101516 Trim63 Rattus norvegicus 140939 19574461 0 0 R59709; RAT$TRIM63_03; Binding factors: rno-miR-23a-3p

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Trim63 RAID00192952 rno-let-7a-1-3p miRNA MIMAT0017085 Trim63 mRNA 140939 Prediction 0.2202 Trim63 RAID00317222 rno-miR-381-3p miRNA MIMAT0003199 Trim63 mRNA 140939 Prediction 0.2381 Trim63 RAID00389173 rno-miR-363-3p miRNA MIMAT0003210 Trim63 mRNA 140939 Prediction 0.1828 Trim63 RAID00447227 rno-let-7c-2-3p miRNA MIMAT0017088 Trim63 mRNA 140939 Prediction 0.2202 Trim63 RAID00498158 rno-miR-32-5p miRNA MIMAT0000811 Trim63 mRNA 140939 Prediction 0.1828 Trim63 RAID00809826 rno-miR-494-3p miRNA MIMAT0003193 Trim63 mRNA 140939 Prediction 0.1828 Trim63 RAID00948286 rno-miR-129-5p miRNA MIMAT0000600 Trim63 mRNA 140939 Prediction 0.1828 Trim63 RAID01006452 rno-miR-101a-3p miRNA MIMAT0000823 Trim63 mRNA 140939 Prediction 0.1828 Trim63 RAID01030733 rno-miR-27a-3p miRNA MIMAT0000799 Trim63 mRNA 140939 Reporter Assay 0.7311 Trim63 RAID01392250 rno-miR-182 miRNA MIMAT0005300 Trim63 mRNA 140939 Prediction 0.1828 Trim63 RAID01465331 rno-miR-92b-3p miRNA MIMAT0005340 Trim63 mRNA 140939 Prediction 0.1828 Trim63 RAID01485713 rno-miR-376b-3p miRNA MIMAT0003196 Trim63 mRNA 140939 Prediction 0.1828 Trim63 RAID01531982 rno-let-7c-1-3p miRNA MIMAT0017087 Trim63 mRNA 140939 Prediction 0.1828 Trim63 RAID01561874 rno-miR-6315 miRNA MIMAT0025050 Trim63 mRNA 140939 Prediction 0.1828 Trim63 RAID01581111 rno-miR-758-3p miRNA MIMAT0005335 Trim63 mRNA 140939 Prediction 0.1828 Trim63 RAID01582675 rno-miR-370-3p miRNA MIMAT0003122 Trim63 mRNA 140939 Prediction 0.1828 Trim63 RAID01583793 rno-miR-410-3p miRNA MIMAT0005311 Trim63 mRNA 140939 Prediction 0.1828 Trim63 RAID01620338 rno-miR-874-3p miRNA MIMAT0005284 Trim63 mRNA 140939 Prediction 0.1828 Trim63 RAID01714530 rno-miR-377-3p miRNA MIMAT0003123 Trim63 mRNA 140939 Prediction 0.1828 Trim63 RAID02242073 rno-miR-29c-3p miRNA MIMAT0000803 Trim63 mRNA 140939 Prediction 0.2381 Trim63 RAID02639788 rno-miR-96-5p miRNA MIMAT0000818 Trim63 mRNA 140939 Prediction 0.1828 Trim63 RAID02662504 rno-miR-23b-3p miRNA MIMAT0000793 Trim63 mRNA 140939 Prediction 0.2202 Trim63 RAID02672127 rno-miR-539-3p miRNA MIMAT0017212 Trim63 mRNA 140939 Prediction 0.1828 Trim63 RAID02725946 rno-miR-154-3p miRNA MIMAT0017136 Trim63 mRNA 140939 Prediction 0.1828 Trim63 RAID02757486 rno-miR-495 miRNA MIMAT0005320 Trim63 mRNA 140939 Prediction 0.1828 Trim63 RAID02769469 rno-miR-98-3p miRNA MIMAT0017111 Trim63 mRNA 140939 Prediction 0.2202 Trim63 RAID02831264 rno-miR-101b-3p miRNA MIMAT0000615 Trim63 mRNA 140939 Prediction 0.1828 Trim63 RAID02876503 rno-miR-770-3p miRNA MIMAT0017317 Trim63 mRNA 140939 Prediction 0.1828 Trim63 RAID02949592 rno-let-7b-3p miRNA MIMAT0004705 Trim63 mRNA 140939 Prediction 0.2202 Trim63 RAID03059984 rno-miR-3575 miRNA MIMAT0017861 Trim63 mRNA 140939 Prediction 0.1828 Trim63 RAID03198104 rno-miR-92a-3p miRNA MIMAT0000816 Trim63 mRNA 140939 Prediction 0.1828 Trim63 RAID03236812 rno-miR-25-3p miRNA MIMAT0000795 Trim63 mRNA 140939 Prediction 0.1828 Trim63 RAID03530445 rno-miR-3596d miRNA MIMAT0017823 Trim63 mRNA 140939 Prediction 0.2202 Trim63 RAID03710077 rno-miR-23a-3p miRNA MIMAT0000792 Trim63 mRNA 140939 Reporter Assay//RT-PCR//Western Blot//Prediction 0.9630 Trim63 RAID03733515 rno-miR-145-5p miRNA MIMAT0000851 Trim63 mRNA 140939 Prediction 0.1828 Trim63 RAID03777323 rno-miR-29a-3p miRNA MIMAT0000802 Trim63 mRNA 140939 Prediction 0.2381 Trim63 RAID03856296 rno-miR-29b-3p miRNA MIMAT0000801 Trim63 mRNA 140939 Prediction 0.2381 Trim63 RAID04017728 rno-miR-3541 miRNA MIMAT0017795 Trim63 mRNA 140939 Prediction 0.1828 Trim63 RAID04062712 rno-let-7f-1-3p miRNA MIMAT0017089 Trim63 mRNA 140939 Prediction 0.2202