DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G081073 Otud1 Rattus norvegicus 498803

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Otud1 rno-let-7b 261 291 -UUGGUGU-GUUGGAUGAU------GGAGU- :||||| |:||| ||| ||||| GGACCACCUCGACC-ACUUCAGCCCCCUCAU Otud1 rno-let-7c 242 273 -UUGGUAUGU----UGGA---UGAUGGAGU- :|||:|:|| |:| || |||||: AGACCGUGCACUACAUCGCGGACCACCUCGA Otud1 rno-let-7e 508 540 -UGAUAU----------GUUGG--AGGAUGGAGU |||||: ::||| ||||||| CACUAUGAUGCAGUGUUUGACCACUCCUACCC-- Otud1 rno-let-7i 253 273 -UGUCGUGUUUGAUGAUGGAGU- ||| |:|::|| |||||: UACAUCGCGGACC---ACCUCGA Otud1 rno-miR-10a 44 78 GUGUUUAA-------------GCCUAGAUGUCCCAU :|:|| |||||| ||||| GGCGAAGCUGUAGGCCCCGGGCGGAUCC-CAGGGA- Otud1 rno-miR-122a 502 536 -UGUUUGUGGUA-------ACAGU---GUGAGGU |:::||||:|| |||: |||||| AAUGGACACUAUGAUGCAGUGUUUGACCACUCCU Otud1 rno-miR-125a 204 241 -GUGUCCAA--UUUC--------CCA--GAGUCCCU- :||:|| |:|| || || ||||| GUACGGGGACCAGAGCCUGCACCGGGAGCUGAGGGAG Otud1 rno-miR-127 43 73 -UCGGUUCGA--------GUCUGCCUAGGCU :|| ||||| |:|:||||||| AGGCGAAGCUGUAGGCCCCGGGCGGAUCCC- Otud1 rno-miR-128a 406 434 -UUUUCUCUGGCCAA-----GUGACACU :|::|||:|:|| ||| ||| GGAGGGAGGCUGGAGAGCCCCACCGUGU Otud1 rno-miR-128b 406 434 -CUUUCUCUGGCCAA-----GUGACACU ||::|||:|:|| ||| ||| GGAGGGAGGCUGGAGAGCCCCACCGUGU Otud1 rno-miR-132 181 205 GCUGGUACCGACA-----UCUGACAAU |||: ||||| ||||||| -UACCGA-GCUGUCAGCAAGACUGUG- Otud1 rno-miR-133a 191 218 UGUCGACCA---ACUU-CCCCUGGUU- |||| | || ||||||||: UCAGCAAGACUGUGUACGGGGACCAGA Otud1 rno-miR-133b 185 218 AUCGAC-----------CAACUUCCCCUGGUU- ||||| || ||||||||: GAGCUGUCAGCAAGACUGUGUACGGGGACCAGA Otud1 rno-miR-135a 64 89 AGUGUA---UCCUUAUUUUUCGGUAU |: || |||:||:|:||||:| GCGGAUCCCAGGGAUGAGAAGCUAG- Otud1 rno-miR-135b 72 89 GUGUAUCCUUACUUUUCGGUAU |||:||||:||||:| ----CAGGGAUGAGAAGCUAG- Otud1 rno-miR-140* 427 445 ACAGGCACCAAGAUGGGACACCAU ||||| |||||| |||| --ACCGUG--UCUACCA--UGGUU Otud1 rno-miR-142-3p 224 258 AGGUAUUUCA--UCCUU---------UGUGAUGU- ||: ::|| |||:| :||||||| ACCG-GGAGCUGAGGGAGCAGACCGUGCACUACAU Otud1 rno-miR-148b 499 524 -UGUUUCAA--GACACUACGUGACU :||| | || ||||||| || AGCAAUGGACACUAUGAUGCAGUGU Otud1 rno-miR-15b 358 383 -ACAUUUGGUACUACACG---ACGAU- || ::|||||: || ||||: UUGCUGGCCAUGGG--GCAGAUGCUGA Otud1 rno-miR-181a 359 388 -UGAGUGG----CUGUC-GCAACUUACAA :|| :|| |:||| :| ||||||| UGCUGGCCAUGGGGCAGAUGCUGAAUGUG Otud1 rno-miR-181b 351 388 -GGG-----UGGCUG-----UCGUU----ACUUACAA ||| :|:|:| :|||: ||||||| CCCCGAAUUGCUGGCCAUGGGGCAGAUGCUGAAUGUG Otud1 rno-miR-181c 359 388 -UGAGUGG----CUGUCCA--ACUUACAA :|| :|| |:||| ||||||| UGCUGGCCAUGGGGCAGAUGCUGAAUGUG Otud1 rno-miR-187 493 512 GCCGACGUUGUGUUCUGUGCU |||| ||:|| :||||| UGGCU-CAGCAAUGGACACU- Otud1 rno-miR-189 485 512 -UGACUAUAGUCGAGUCAU--CC-GUG- :|| :|::|||||| || ||| GGCUUA-GUUGGCUCAGCAAUGGACACU Otud1 rno-miR-193 332 349 GACCCUGAAACAUCCGGUCAA ||||:| ||:||||:| AUGGGGC---GUGGGCCGGA- Otud1 rno-miR-207 102 126 -UUCCCUCCUCUCGGUCCUCUUCG- :||| |||||| ||||| |||: CGAGGU-GGAGAGGCAGGACAAGUA Otud1 rno-miR-217 487 524 UAGGUCAGUCAAGG-------------ACUACGUCAU- ::|||::| || |||||||||: -CUUAGUUGGCUCAGCAAUGGACACUAUGAUGCAGUGU Otud1 rno-miR-24 199 238 -GACAA--------------GGACGA----CUUGACUCGGU |||| ||||| ||:||||| ACUGUGUACGGGGACCAGAGCCUGCACCGGGAGCUGAGG-- Otud1 rno-miR-28 403 428 -GAGUUA--UCUGACA-CUCGAGGAA || :| ||:||| |||| || ACUGGAGGGAGGCUGGAGAGCCCCA- Otud1 rno-miR-296 327 347 UGUCCUAACUCCC-C-CCCGGGA |||||| :||| | ||||| CCAGGAU--GGGGCGUGGGCCG- Otud1 rno-miR-31 82 104 GUCGAUACGGU-CGUAGAACGGA ||||| ||| |:| || ||| AAGCUA-GCCCUGUACCUGGCCG Otud1 rno-miR-324-3p 84 111 -GGUCGU--CGUGGACCCCG-UCACC- |:||| |:|||||| :|||| GCUAGCCCUGUACCUGGCCGAGGUGGA Otud1 rno-miR-324-5p 317 345 UGUGGUUACGGGAU---CCCC-UACGC- |:|:: ||||| |||| :|| | UCGCUGCUGCCCAGGAUGGGGCGUGGGC Otud1 rno-miR-326 402 422 -UGACCUCCUUCCCGGGUCUCC ||||||||:||| |::||| UACUGGAGGGAGG--CUGGAGA Otud1 rno-miR-327 275 297 UGGGAGUACGGGGAGU---UCC- |:||| ||||||| ||| -ACUUCAGCCCCCUCAUUGAGGG Otud1 rno-miR-328 329 349 UGCCU-UCCCGUCUCUCCCGGUC- ||| :||||: |||||:| -AGGAUGGGGCGU---GGGCCGGA Otud1 rno-miR-33 500 521 -GUUACGU-UGAUGUUACGUG ||||| | ||||::||||| GCAAUGGACACUAUGAUGCAG Otud1 rno-miR-331 42 67 AAGAUCC-------UAUCCGGGUCCCCG- ||| :||||||| |||| ---GAGGCGAAGCUGUAGGCCCC-GGGCG Otud1 rno-miR-335 654 664 UGUAAAAAGCAAUAACGAGAACU ||||||||| -------------AUGCUCUUGA Otud1 rno-miR-338 496 520 -AGUUGUUUUA-GUGA--CUACGACCU |||:||| |||| ||||| CUCAGCAAUGGACACUAUGAUGCA--- Otud1 rno-miR-339 55 79 ACUCGAGGACCUCCU---GUCCCU- :|| || || ||| |||||| -AGGCCCCGGGCGGAUCCCAGGGAU Otud1 rno-miR-340 112 138 -CCGAUAU-UUCAUUGACUCUGCCU- ||| ||||| ||||||| || AGGCAGGACAAGUACCUGAGACAGAG Otud1 rno-miR-343 293 311 AGACCCGUGUGC-CUCCCUCU ||||: ||| |:||||| --AGGGCG-ACGUGGGGGAGU Otud1 rno-miR-346 41 71 UCUCCG--------UCCGUGAGUCCGUCUGU ||||| |||| | |:|||:||: CGAGGCGAAGCUGUAGGCCC-CGGGCGGAUC Otud1 rno-miR-347 293 310 ACCCGCUGGGUCUCCCUGU ||||||| ::| |||| AGGGCGACGUGG-GGGAG- Otud1 rno-miR-349 102 122 UCUCCAAUUCUGUCGUCCCGAC ||||| :||| :||||| | CGAGGUGGAGA-GGCAGGACA- Otud1 rno-miR-351 53 79 -GUCCGAGUUUCCCG---AGGAGUCCCU- :|||| | |||| ||| |||||| GUAGGC-CCC-GGGCGGAUCC-CAGGGAU Otud1 rno-miR-363-3p 230 253 -UGUCUACCUA---UGGCACGUUAA :| || ||| |||||||| AGCUGAGGGAGCAGACCGUGCAC-- Otud1 rno-miR-363-5p 18 38 UUUAACGUAGCA-CUAGG-UGGGC ||| || ||||| |||| ----AGCAGCGGCGAUCCGACCCA Otud1 rno-miR-365 328 342 UAUUCCUAAAAAUCCCCGUAAU ||||| |||||:| --CAGGAU-----GGGGCGUG- Otud1 rno-miR-379 427 441 AUGCAAGGUAUCAGAUGGU- ||:| |||||||| -----ACCGU-GUCUACCAU Otud1 rno-miR-382 263 281 CUUAGGUGGUGCUUGUUGAAG- ||||| || || ||||| ---ACCACCUCG-ACCACUUCA Otud1 rno-miR-412 83 113 UGCCGAUC---------ACCUGG-UCCACUUCA ||||| ||| || |||||:|| --AGCUAGCCCUGUACCUGG-CCGAGGUGGAGA Otud1 rno-miR-422b 427 462 CGGA--AGACUG------------AGGUUCAGGUCA || ||| || ||: |||||| ACCGUGUCU-ACCAUGGUUCACUAUCUGGGUCCAGA Otud1 rno-miR-424 543 566 AGGUUUUGUACU--UAACGACGAC |||:|::|||| |||| ||| CCCAGAGUAUGACAAUUGGUGCA- Otud1 rno-miR-431 91 123 -ACGUACUGCCGGA----------CGUUCUGU- ||:| :|||| |||:|||| CUGUACC-UGGCCGAGGUGGAGAGGCAGGACAA Otud1 rno-miR-449 156 180 -UGGUC--GAUUGUUAUGUGACGGU |:|| ||:||::|| |||||| CAUCAUCCCUGACGGUA-ACUGCCU Otud1 rno-miR-485 254 272 CUUAAGUAGUGCC-GGUCGGAGA ||||:||| ||| |||| ----ACAUCGCGGACCA-CCUCG Otud1 rno-miR-497 358 383 -AUGUUUGGUGUCACACG---ACGAC- |:| ::|||::| || ||||| UUGCUGGCCAUGGG--GCAGAUGCUGA Otud1 rno-miR-501 442 468 AAAGUGGGU--CCCU-GUUUCCUAA- |||||: ||| ||:|||||| GUUCACUAUCUGGGUCCAGAGGAUUC Otud1 rno-miR-503 302 327 GUCAUGACAAG----GGCGACGAU- :| : |||: :|||||||: UGGGGGAGUUUAUUAUCGCUGCUGC Otud1 rno-miR-541 143 167 ACACUGGU-----UGUAGUCUUAGGGAA || |||: |||||| ||||| AGU-ACCGAUUCCACAUCA---UCCCUG Otud1 rno-miR-542-5p 335 358 GCACUGUACUA---CUA-GGGGCUC |:|:||: ||| |||||| --GGGCGUGGGCCGGAUACCCCGAA Otud1 rno-miR-98 248 273 UUGUUAUGU--UGAAUGAUGGAGU- :|| |||| :| || |||||: UGCACUACAUCGCGGACCACCUCGA Otud1 rno-miR-99a 193 212 GUGUUCUAGCCUAGAUGCCCAA :||||| :| |||||| AGCAAGACU--GUGUACGGGG- Otud1 rno-miR-99b 193 212 GCGUUCCAGCCAAGAUGCCCAC ||||| | || |||||| AGCAAGA-CUGUG-UACGGGG- Otud1 rno-let-7b 250 271 uUGGUGUGUUGGAUGAUGGAGu ||:|||: :| || ||||| cACTACATCGCGGACCACCTCg Otud1 rno-let-7c 243 271 uUGGUAUGU--UGGA-----UGAUGGAGu |||:|:|| || | || ||||| gACCGTGCACTACATCGCGGACCACCTCg Otud1 rno-let-7e 519 541 UGAUAUGUUG--GAGGAUGGagu | |:| ::|| |||||||| AGTGTTTGACCACTCCTACCcta Otud1 rno-let-7i 254 271 UGUCGUGUUUGAUGAUGGAGu ||| |:|:: || ||||| ACATCGCGG---ACCACCTCg Otud1 rno-miR-10a 57 78 guguuuaaGCCUAGAUGUCCCau |||||| ||||| gccccgggCGGATC-CCAGGGat Otud1 rno-miR-122a 503 535 UGUUUGUGGUA-------ACAG---UGUGAGGu |:::||||:|| |||: |||||| ATGGACACTATGATGCAGTGTTTGACCACTCCt Otud1 rno-miR-125a 214 239 GUGUCCAAUUU--CCC-AGAGUCCCU || || |: | ||| || ||||| CAGAGCCTGCACCGGGAGCTGAGGGA Otud1 rno-miR-127 49 73 UCG--GUUC-GAGUCUGCCUAGGcu ||| :|:| | |:|:||||||| AGCTGTAGGCCCCGGGCGGATCCca Otud1 rno-miR-128a 407 433 uUUUCUCUGGCC-----AAGUGACACu |::|||:|:|| ||| ||| gAGGGAGGCTGGAGAGCCCCACCGTGt Otud1 rno-miR-128b 407 433 CUUUCUCUGGCC-----AAGUGACACu ||::|||:|:|| ||| ||| GAGGGAGGCTGGAGAGCCCCACCGTGt Otud1 rno-miR-132 184 205 GCUGGUACCGAC-AUCUGACAau ||| | || | | ||||||| CGAGC-TGTCAGCAAGACTGTgt Otud1 rno-miR-133a 191 216 uGUCGACC--A-AC-UUCCCCUGGUu |||| | | || | |||||||| tCAGCAAGACTGTGTACGGGGACCAg Otud1 rno-miR-133b 196 216 aUC-GACCAAC-UUCCCCUGGUu || ||| || | |||||||| aAGACTG--TGTACGGGGACCAg Otud1 rno-miR-135a 69 89 AGUGUAUCCUUAUUUUUCGGUau || | |||:||:|:||||:| TCCC--AGGGATGAGAAGCTAgc Otud1 rno-miR-135b 68 89 guguaUCCUUACUUUUCGGUau |||:||||:||||:| atcccAGGGATGAGAAGCTAgc Otud1 rno-miR-140* 431 457 ACA---GGCACCAAGAUG--GGACACCAu ||| || |||||| || :||| ||| TGTCTACCATGGTTC-ACTATCTG-GGTc Otud1 rno-miR-142-3p 229 256 agguAUUUCAUC--CU---UUGUGAUGU |:|:| || || :||||||| gagcTGAGGGAGCAGACCGTGCACTACA Otud1 rno-miR-148b 500 523 uGUUUC--AAGACACUACGUGACu ||| | || ||||||| || gCAATGGACACTATGATGCAGTGt Otud1 rno-miR-15b 359 384 ACAUUUGGUACUAC----ACGACgau || ::|||||: | ||||| TGCTGGCCATGGGGCAGATGCTGaat Otud1 rno-miR-181a 360 387 uGAGUGG----CUGUC-GCAACUUACAa || :|| |:||| :| ||||||| gCTGGCCATGGGGCAGATGCTGAATGTg Otud1 rno-miR-181b 364 387 gGGUG-GCUGUC-GUUACUUACAa |||: |:||| :: ||||||| gCCATGGGGCAGATGCTGAATGTg Otud1 rno-miR-181c 360 387 uGAGUGG----CUGUC--CAACUUACAa || :|| |:||| | ||||||| gCTGGCCATGGGGCAGATGCTGAATGTg Otud1 rno-miR-187 493 512 gCCGACGUUGUGUUCUGUGcu |||| ||:|| :||||| tGGCT-CAGCAATGGACACta Otud1 rno-miR-189 475 498 uGACUAU-AGUCGAGUCAUCCGug || :|| |::|||:||| ||| cCTAGTATTTGGCTTAGTTGGCtc Otud1 rno-miR-193 332 349 gACCCUGAAACAUCCGGUCaa ||||:| ||:||||:| aTGGGGC---GTGGGCCGGat Otud1 rno-miR-217 495 522 uagGUCAGU--CAAG-G--ACUACGUCAu ||| || | | | ||||||||| gctCAG-CAATGGACACTATGATGCAGTg Otud1 rno-miR-22* 585 602 UUUCGAACGGUGACUUCUUGA ||| | || || |||||||| AAAAC--GCGAC-GAAGAACT Otud1 rno-miR-24 200 221 GACAAGGACGACUUGACUCGGu |||| : | || | ||||| CTGTGTACGGGGACCAGAGCCt Otud1 rno-miR-28 406 428 gaguuaUCUGA-CACUCGAGGaa ||:|| | |||| || ggagggAGGCTGGAGAGCCCCac Otud1 rno-miR-296 327 347 uGUCCUAACUCCCCCCCGGga |||||| |:| | ||||| cCAGGATGGGGCGTGGGCCgg Otud1 rno-miR-324-3p 85 106 GGUC--GUCGUGGACCCCGUCACC |:|| | |:|||| ||| | || CTAGCCCTGTACCT--GGCCGAGG Otud1 rno-miR-326 530 550 ugaccuccuucccGGGUCUCc ||||||| actcctaccctaaCCCAGAGt Otud1 rno-miR-326 403 421 UGACCUCCUUCCCGGGUCUCc ||||||||:||| |::||| ACTGGAGGGAGG--CTGGAGa Otud1 rno-miR-327 274 292 ugGGAGUACGGGGAGUucc |:||| ||||||| caCTTCAGCCCCCTCAttg Otud1 rno-miR-328 328 347 ugCCUUCCCGUCUCUCCCGGUC ||| ||| | | |||||:| caGGATGGG--GCGTGGGCCGG Otud1 rno-miR-33 501 520 GUUACGU-UGAUGUUACGUg ||||| | ||||::||||| CAATGGACACTATGATGCAg Otud1 rno-miR-331 61 78 aagauCCUAUCCGGGUCCCcg |||| ||||||| cgggcGGAT---CCCAGGGat Otud1 rno-miR-335 641 663 uguaaaaagcaauaACGAGAACU ||||||||| tcgaacagaatgcaTGCTCTTGA Otud1 rno-miR-337 215 236 UUUCCGUAGUAUAUCCUCGACUu |:|| | || :|||||||| AGAGCCTGCA-CCGGGAGCTGAg Otud1 rno-miR-338 497 522 AGUUGUU-UUAGUG--ACUACGACcu |||:||| :: ||| |||||| | TCAGCAATGGACACTATGATGCAGtg Otud1 rno-miR-339 54 77 ACUCGAGGACCUCCU---GUCCCU | :|| || || ||| |||||| TAGGCCCCGGGCGGATCCCAGGGA Otud1 rno-miR-340 113 136 CCGAUAU-UUCAUUGACUCUGCCU ||| : | ||||| ||||||| || GGCAGGACAAGTACCTGAGACAGA Otud1 rno-miR-343 224 241 aGACCCGUGUGCCUCCCUCu | ||| | :| ||||||| aCCGGG-A-GCTGAGGGAGc Otud1 rno-miR-343 393 414 agacccgUG-UG-CCUCCCUCu || || |||||||| acacttaACTACTGGAGGGAGg Otud1 rno-miR-343 291 310 agaCCCGUGUGC-CUCCCUCu ||||: ||| |:||||| tgaGGGCG-ACGTGGGGGAGt Otud1 rno-miR-346 49 70 UCUCCGUCCGUGAGUCCGUCUgu || |:|||| | |:|||:|| AGCTGTAGGC-CCCGGGCGGAtc Otud1 rno-miR-347 293 310 aCCCGCUGGGUCUCCCUgu ||||||| : |:|||| aGGGCGACGT-GGGGGAgt Otud1 rno-miR-349 102 122 uCUCCAAUUCUGUCGUCCCGac ||||| :||| :||||| | cGAGGTGGAGA-GGCAGGACaa Otud1 rno-miR-34b 154 180 GU-UAGU--CGAUU--AAUGUGACGGAu || |||| ||:| || ||||||| CACATCATCCCTGACGGTA-ACTGCCTt Otud1 rno-miR-351 54 77 gUCCGAGUUUCCCGAGGAGUCCCU |||| | ::| | :| |||||| tAGGCCCCGGGCGGATCCCAGGGA Otud1 rno-miR-363-3p 231 254 uGUCUACC---UAUGGCACGUUAa | || || | |||||||| | gCTGAGGGAGCAGACCGTGCACTa Otud1 rno-miR-363-5p 14 37 uuuaaCGUAG-CACUAGG-UGGGc ||| | | ||||| |||| acggaGCAGCGGCGATCCGACCCa Otud1 rno-miR-365 326 342 uauUCCUAAAAAUCCCCGUAau ||||| |||||:| cccAGGAT-----GGGGCGTgg Otud1 rno-miR-379 422 439 augcaaGGUAUCAGAUGGU ||:| |||||||| gccccaCCGT-GTCTACCA Otud1 rno-miR-382 261 279 CUUAGGUGGUGCUUGUUGAAG |:| ||||| || || ||||| GGA-CCACCTCG-ACCACTTC Otud1 rno-miR-412 81 112 ugcCGAUC---ACCUGG------UCCACUUCa ||||| || ||| |||||:|| gaaGCTAGCCCTGTACCTGGCCGAGGTGGAGa Otud1 rno-miR-422b 432 461 CGGAAG--AC----UG--AGGUUCAGGUCa |:|| | || || ||:::|||||| GTCTACCATGGTTCACTATCTGGGTCCAGa Otud1 rno-miR-424 543 566 aGGUUUUGUAC--UUAACGACGac |||:|::||| ||||| ||| cCCAGAGTATGACAATTGGTGCaa Otud1 rno-miR-431 100 121 acGUACUGCC-GGACGUUCUGU |: |::|| |||:|||| gcCGAGGTGGAGAGGCAGGACA Otud1 rno-miR-449 161 179 uGGUCGAUUGUUAUGUGACGGu || ||:||::| |||||| tCC--CTGACGGT-AACTGCCt Otud1 rno-miR-485 250 271 cUUAAGUAGUGCC-GGUCGGAGa | | ||||:||| ||| |||| cACTACATCGCGGACCA-CCTCg Otud1 rno-miR-497 359 384 AUGUUUGGUGUCAC----ACGACgac |:| ::|||::| | ||||| TGCTGGCCATGGGGCAGATGCTGaat Otud1 rno-miR-503 307 325 gUCAUGACAAGGGCGACGAu ||| :| || :||||||| gAGT-TTATTATCGCTGCTg Otud1 rno-miR-541 146 166 acaCU-GGUUGUAGUCUUAGGGAa || :| ||||| |||||| accGATTCCACATC---ATCCCTg Otud1 rno-miR-542-5p 338 357 GCA-CUGUACUACUAGGGGCUc ||| |:| ||| |||||| CGTGGGCCGGATA--CCCCGAa Otud1 rno-miR-99a 192 212 GU-GUUCUAGCCUAGAUGCCCaa || ||||| | | | |||||| CAGCAAGA-CTG-TGTACGGGga Otud1 rno-miR-99b 193 212 gCGUUCCAGCCAAGAUGCCCac |||| | | | | |||||| aGCAA-GACTG-TGTACGGGga Otud1 rno-miR-133a 209 216 UG----------UCGAC-----------CAACUUCCCCUGGUU ||||| || ||||||||: CUGCCUUUACCGAGCUGUCAGCAAGACUGUGUACGGGGACCAGA Otud1 rno-miR-133b 209 216 A-----------UCGAC-----------CAACUUCCCCUGGUU ||||| || ||||||||: CUGCCUUUACCGAGCUGUCAGCAAGACUGUGUACGGGGACCAGA Otud1 rno-miR-181a 380 387 ---------------UGAGUGG----CUGUC-GCAACUUACAA :|| :|| |:||| :| ||||||| CGGAUACCCCGAAUUGCUGGCCAUGGGGCAGAUGCUGAAUGUG Otud1 rno-miR-181b 380 387 -------GGG-----UGGCUG-----UCGUU----ACUUACAA ||| :|:|:| :|||: ||||||| CGGAUACCCCGAAUUGCUGGCCAUGGGGCAGAUGCUGAAUGUG Otud1 rno-miR-181c 380 387 ---------------UGAGUGG----CUGUCCA--ACUUACAA :|| :|| |:||| ||||||| CGGAUACCCCGAAUUGCUGGCCAUGGGGCAGAUGCUGAAUGUG Otud1 rno-miR-217 515 522 UA------GGUCAGUCAAGG-------------ACUACGUCAU ::||| | || |||||||||: UAUUUGGCUUAGUUGGCUCAGCAAUGGACACUAUGAUGCAGUGU Otud1 rno-miR-22* 595 602 ---------------------UUUCGAA--CGGUGACUUCUUGA |:|| || || |||||||| GGUGCAAGCAAACCCAAAUGCAGAGAAAACGCGAC-GAAGAACUU Otud1 rno-miR-326 543 550 UGACCUCCUUCCC----------------------GGGUCUCC ||||||| CACUAUGAUGCAGUGUUUGACCACUCCUACCCUAACCCAGAGU Otud1 rno-miR-337 229 236 UU-------------------UC-CGUA-GUAUAUCCUCGACUU || || || :||||||||: GCAAGACUGUGUACGGGGACCAGAGCCUGCACC-GGGAGCUGAGG Otud1 rno-miR-343 234 241 AGA-------------------------CCCGUGUGCCUCCCUCU ||| :| ||||||| ACUGUGUACGGGGACCAGAGCCUGCACCGGGA--GCUGAGGGAGC Otud1 rno-miR-343 407 414 AGACCC------------------------GUGUGCCUCCCUCU :|| :||||||||: GCAGAUGCUGAAUGUGAAUAUACACUUAACUAC-UGGAGGGAGGC Otud1 rno-miR-34b 173 180 GU-----------------UAGUC--GAUUAAUG-UGACGGAU |||| ||:| ||||||| GAACAAGUACCGAUUCCACAUCAUCCCUGACGGUAACUGCCUU Otud1 rno-miR-379 432 439 AUGCAA-------------------------GGUAUCAGAUGGU ||:| |||||||| UUAACUACUGGAGGGAGGCUGGAGAGCCCCACCGU-GUCUACCAU Otud1 rno-miR-503 318 325 G------------------------UCAUGACAAGGGCGACGAU ||| :|||||||: CCCCUCAUUGAGGGCGACGUGGGGGAGUUUAUUA-UCGCUGCUGC

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Otud1 RAID00024380 rno-miR-19b-3p miRNA MIMAT0000788 Otud1 mRNA 498803 Prediction 0.2202 Otud1 RAID00104014 rno-miR-452-5p miRNA MIMAT0035748 Otud1 mRNA 498803 Prediction 0.1828 Otud1 RAID00252127 rno-miR-150-5p miRNA MIMAT0000853 Otud1 mRNA 498803 Prediction 0.1828 Otud1 RAID01014712 rno-miR-186-3p miRNA MIMAT0017143 Otud1 mRNA 498803 Prediction 0.1828 Otud1 RAID01118814 rno-miR-20a-3p miRNA MIMAT0000603 Otud1 mRNA 498803 Prediction 0.1828 Otud1 RAID01468000 rno-miR-106b-5p miRNA MIMAT0000825 Otud1 mRNA 498803 Prediction 0.1828 Otud1 RAID01748682 rno-miR-497-3p miRNA MIMAT0017230 Otud1 mRNA 498803 Prediction 0.1828 Otud1 RAID01862389 rno-miR-19a-3p miRNA MIMAT0000789 Otud1 mRNA 498803 Prediction 0.2202 Otud1 RAID02050643 rno-miR-376b-3p miRNA MIMAT0003196 Otud1 mRNA 498803 Prediction 0.1828 Otud1 RAID02108539 rno-miR-336-3p miRNA MIMAT0017034 Otud1 mRNA 498803 Prediction 0.1828 Otud1 RAID02133663 rno-miR-124-3p miRNA MIMAT0000828 Otud1 mRNA 498803 Prediction 0.1828 Otud1 RAID02147908 rno-miR-350 miRNA MIMAT0000604 Otud1 mRNA 498803 Prediction 0.1828 Otud1 RAID02241351 rno-miR-3120 miRNA MIMAT0017900 Otud1 mRNA 498803 Prediction 0.1828 Otud1 RAID02329895 rno-miR-449c-3p miRNA MIMAT0017804 Otud1 mRNA 498803 Prediction 0.1828 Otud1 RAID02554839 rno-let-7c-1-3p miRNA MIMAT0017087 Otud1 mRNA 498803 Prediction 0.1828 Otud1 RAID03014144 rno-miR-100-3p miRNA MIMAT0017112 Otud1 mRNA 498803 Prediction 0.1828 Otud1 RAID03523185 rno-miR-3102 miRNA MIMAT0025051 Otud1 mRNA 498803 Prediction 0.1828 Otud1 RAID03552061 rno-miR-20a-5p miRNA MIMAT0000602 Otud1 mRNA 498803 Prediction 0.1828 Otud1 RAID03711597 rno-miR-217-5p miRNA MIMAT0000887 Otud1 mRNA 498803 Prediction 0.1828 Otud1 RAID03815809 rno-miR-883-3p miRNA MIMAT0005290 Otud1 mRNA 498803 Prediction 0.1828 Otud1 RAID03860224 rno-miR-494-3p miRNA MIMAT0003193 Otud1 mRNA 498803 Prediction 0.1828 Otud1 RAID03925145 rno-let-7f-2-3p miRNA MIMAT0017090 Otud1 mRNA 498803 Prediction 0.1828