DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000547 rno-miR-322* 316575 Trip12 acaacgUCGCG-AAGUACAAa :|| | |||||||| aaggaaGGCUCAUUCAUGUUu 2 15 782 802 [rn4:9:83961765-83961785:-] 0.5629 149 7 -12.59 -0.6451 MIMAT0000547 rno-miR-322* 316575 Trip12 acaACGUC-GCGA----AGUACAaa | ||| ||:| |||||| aagUACAGUCGUUAAACUCAUGUgu 3 18 383 407 [rn4:9:83962160-83962184:-] 0.6961 123 0 -12.97 -0.1285 MIMAT0000568 rno-miR-330* 316575 Trip12 agagACGUCCGGGA---CACGAAACg || || :::| ||||||| ugagUGAAGUUUUUAACUUGCUUUGc 2 20 226 251 [rn4:9:83962316-83962341:-] 0.6961 142 7 -12.88 -1.1317 MIMAT0000568 rno-miR-330* 316575 Trip12 agagACGUCCGGGA---CACGAAACg || || :::| ||||||| ugagUGAAGUUUUUAACUUGCUUUGc 2 20 226 251 [rn4:9:83962316-83962341:-] 0.6961 142 7 -12.88 -1.0194 MIMAT0004708 rno-miR-9* 316575 Trip12 ugAAAGCCAAUAGAUC-GAAAUa |||| ||| || || ||||| ugUUUCUGUUCUC-AGUCUUUAu 2 21 962 983 [rn4:9:83961584-83961605:-] 0.5629 134 0 -10.73 -0.6017 MIMAT0004711 rno-miR-21* 316575 Trip12 cugucggguagcuGACGACAac :|||||| uuuuuaacuugcuUUGCUGUgu 3 10 235 256 [rn4:9:83962311-83962332:-] 0.6961 121 0 -10.40 -0.1252 MIMAT0004711 rno-miR-21* 316575 Trip12 cugucgGGUAGCUGAC-GACAAc :|| :| ||| ||||| aagaaaUCAAUGUCUGCCUGUUa 2 17 8 30 [rn4:9:83962537-83962559:-] 0.6961 120 0 -13.98 -1.3304 MIMAT0004711 rno-miR-21* 316575 Trip12 cugucgGGUAGCUGAC-GACAAc :|| :| ||| ||||| aagaaaUCAAUGUCUGCCUGUUa 2 17 8 30 [rn4:9:83962537-83962559:-] 0.6961 120 0 -13.98 -1.2109 MIMAT0004716 rno-miR-28* 316575 Trip12 agguCCUCGAGUGUU-AGAUCAc | | :| |||| |||||| auguGUAUUUGACAACUCUAGUu 2 19 402 424 [rn4:9:83962143-83962165:-] 0.6961 126 6 -10.39 -1.0681 MIMAT0004717 rno-miR-29b-2* 316575 Trip12 gauucGGUGGUACACUUUGGUc :||| | ||||:|| -----UCACAACAAGAAAUCAa 2 18 1 17 [rn4:9:83962550-83962566:-] 0.7639 133 0 -9.87 -0.1615 MIMAT0004718 rno-miR-29a* 316575 Trip12 gacuuGUGGUUUUCUUUAGUca ||| | ||||||||| ----uCACAACAAGAAAUCAau 3 18 1 18 [rn4:9:83962549-83962566:-] 0.7639 149 0 -12.62 -0.1304 MIMAT0004718 rno-miR-29a* 316575 Trip12 gacuUGUGGUUUUC----UUUAGUca ||| |||||| |||||| uguuACAGCAAAAGAAAAAAAUCAug 3 19 26 51 [rn4:9:83962516-83962541:-] 0.6961 141 0 -14.31 -0.1941 MIMAT0004718 rno-miR-29a* 316575 Trip12 gacuUGUGGUUUUC----UUUAGUca ||| |||||| |||||| uguuACAGCAAAAGAAAAAAAUCAug 3 19 26 51 [rn4:9:83962516-83962541:-] 0.6961 141 0 -14.31 -0.1190 MIMAT0004719 rno-miR-30c-1* 316575 Trip12 ccucauuuguUGGGAGAGGGUc ::|:||||||| uuucacucucGUCUUCUCCCAg 2 13 983 1004 [rn4:9:83961563-83961584:-] 0.5629 148 7 -21.23 -0.3611 MIMAT0005442 rno-miR-30c-2* 316575 Trip12 ucucauuuguCGGAAGAGGGUc |:||||||||| uuucacucucGUCUUCUCCCAg 2 13 983 1004 [rn4:9:83961563-83961584:-] 0.5629 156 7 -23.99 -0.3611 MIMAT0000813 rno-miR-34b 316575 Trip12 guuagucgauuaauguGACGGAu |||||| aacaagaaaucaauguCUGCCUg 2 8 5 27 [rn4:9:83962540-83962562:-] 0.7639 120 6 -13.62 -0.2347 MIMAT0004739 rno-miR-204* 316575 Trip12 uugcaggGAAACGGAAGGGUCg :||| ::||||||| ucucuaaUUUUCUUUUCCCAGu 2 16 456 477 [rn4:9:83962090-83962111:-] 0.6961 155 7 -17.72 -1.1227 MIMAT0000894 rno-miR-291a-5p 316575 Trip12 ucucucccggaggugAAACUAc |||||| uuaaauuaucauuuaUUUGAUg 2 8 206 227 [rn4:9:83962340-83962361:-] 0.6961 120 6 -10.42 -0.2157 MIMAT0000894 rno-miR-291a-5p 316575 Trip12 ucucucccggaggugAAACUAc |||||| uuaaauuaucauuuaUUUGAUg 2 8 206 227 [rn4:9:83962340-83962361:-] 0.6961 120 6 -10.42 -0.1320 MIMAT0000902 rno-miR-300-3p 316575 Trip12 cuucucucgaacggGAACGUau |||||| uuguaggaaaacggCUUGCAga 3 9 101 122 [rn4:9:83962445-83962466:-] 0.6961 120 0 -10.43 -0.2016 MIMAT0000902 rno-miR-300-3p 316575 Trip12 cuucucucgaacggGAACGUau |||||| uuguaggaaaacggCUUGCAga 3 9 101 122 [rn4:9:83962445-83962466:-] 0.6961 120 0 -10.43 -0.1239 MIMAT0001547 rno-miR-450a 316575 Trip12 guaauccuuguguagCGUUUUu |||||| ugucugccuguuacaGCAAAAg 2 8 18 39 [rn4:9:83962528-83962549:-] 0.6961 120 6 -7.19 -0.1212 MIMAT0003124 rno-miR-412 316575 Trip12 ugccGAUCACCUGGUCCACUUCa :|| | || :: |||||| ucauUUAUUUGA-UGAGUGAAGu 2 20 214 235 [rn4:9:83962332-83962353:-] 0.6961 121 6 -13.13 -0.2241 MIMAT0003124 rno-miR-412 316575 Trip12 ugccGAUCACCUGGUCCACUUCa :|| | || :: |||||| ucauUUAUUUGA-UGAGUGAAGu 2 20 214 235 [rn4:9:83962332-83962353:-] 0.6961 121 6 -13.13 -0.1358 MIMAT0003197 rno-miR-376a* 316575 Trip12 gagUAUCUUCCUCUUAGAUgg || |: | |||||| caaAUUAAGAUACAAUCUAaa 3 19 594 614 [rn4:9:83961953-83961973:-] 0.5629 126 0 -5.44 -0.1419 MIMAT0003378 rno-miR-378* 316575 Trip12 uguguccUGGACCUCAG-UCCUc |||| ||||| |||| cugugucACCU-GAGUCAAGGAa 2 16 61 82 [rn4:9:83962485-83962506:-] 0.6961 125 0 -17.72 -1.0534 MIMAT0003378 rno-miR-378* 316575 Trip12 uguguccUGGACCUCAG-UCCUc |||| ||||| |||| cugugucACCU-GAGUCAAGGAa 2 16 61 82 [rn4:9:83962485-83962506:-] 0.6961 125 0 -17.72 -0.9010 MIMAT0003380 rno-miR-505 316575 Trip12 ccuuuGGUCGUUCACAACUg ::| | ||||||| gggccUUAUCCUGUGUUGAu 2 16 573 592 [rn4:9:83961975-83961994:-] 0.5629 143 7 -14.29 -0.6815 MIMAT0003382 rno-miR-664 316575 Trip12 auccgaccccucAUUUACUUAu ||||||||| gguguaaaguuuUAAAUGAAUu 2 11 874 895 [rn4:9:83961672-83961693:-] 0.5629 150 7 -8.61 -1.1832 MIMAT0005285 rno-miR-877 316575 Trip12 gggAC-GCGGUAG-AGGAGAUg || | ||||: ||||||| uggUGUCUCCAUUGUCCUCUAg 2 18 753 774 [rn4:9:83961793-83961814:-] 0.5629 155 7 -18.12 -0.3702 MIMAT0005285 rno-miR-877 316575 Trip12 ggGACGCGGUAGAGG-AGAUg |||:| ::| ||| |||| ggCUGUG-UGUAUCCAUCUAg 2 19 320 339 [rn4:9:83962228-83962247:-] 0.6961 120 0 -15.63 -0.9000 MIMAT0005290 rno-miR-883 316575 Trip12 uaugacucuCUACAACGUCAAu | || ||||||| auaaaugucGCUG-UGCAGUUu 2 14 292 312 [rn4:9:83962255-83962275:-] 0.6961 143 7 -9.98 -0.6379 MIMAT0005290 rno-miR-883 316575 Trip12 uauGACUCUCUACA-ACGUCAAu || || | || ||||||| cauCU-AGCUAAGUCUGCAGUUu 2 20 333 354 [rn4:9:83962213-83962234:-] 0.6961 148 7 -10.11 -0.7398 MIMAT0005290 rno-miR-883 316575 Trip12 uaugacucuCUACAACGUCAAu | || ||||||| auaaaugucGCUG-UGCAGUUu 2 14 292 312 [rn4:9:83962255-83962275:-] 0.6961 143 7 -9.98 -0.5209 MIMAT0005301 rno-miR-188 316575 Trip12 gggaggugguacgUUCCCUAc ||||||| gugugaaauuucaAAGGGAUg 2 9 253 273 [rn4:9:83962294-83962314:-] 0.6961 140 7 -15.16 -1.1029 MIMAT0005301 rno-miR-188 316575 Trip12 gggaggugguacgUUCCCUAc ||||||| gugugaaauuucaAAGGGAUg 2 9 253 273 [rn4:9:83962294-83962314:-] 0.6961 140 7 -15.16 -0.9930 MIMAT0005328 rno-miR-673 316575 Trip12 gagGUUCCUGGCCUCGACACuc ||| | :| |||||| gaaCAAUAAAUGUCGCUGUGca 3 20 287 308 [rn4:9:83962259-83962280:-] 0.6961 131 0 -13.18 -0.2365 MIMAT0005328 rno-miR-673 316575 Trip12 gagguuccuggccuCGACACuc |||||| uuuuaacuugcuuuGCUGUGug 3 9 236 257 [rn4:9:83962310-83962331:-] 0.6961 120 0 -14.23 -0.2348 MIMAT0005328 rno-miR-673 316575 Trip12 gagguuccuggccuCGACACuc |||||| uuuuaacuugcuuuGCUGUGug 3 9 236 257 [rn4:9:83962310-83962331:-] 0.6961 120 0 -14.23 -0.1294 MIMAT0005332 rno-miR-708* 316575 Trip12 gauCUUCGAGUG-UCAGAUCAAc | | :| || | ||||||| uguGUAUUUGACAACUCUAGUUu 2 20 403 425 [rn4:9:83962142-83962164:-] 0.6961 150 7 -9.26 -0.7688 MIMAT0005333 rno-miR-742 316575 Trip12 aaauggguuguaccACCGAAAg ||||||| uuacagagcucacuUGGCUUUc 2 9 702 723 [rn4:9:83961844-83961865:-] 0.5629 140 7 -16.82 -0.3705 MIMAT0012823 rno-miR-490 316575 Trip12 gucguACCUCA--GGAGGUCCAAc || | | :| :|||||| agaucUGCAAUAAUCAUCAGGUUa 2 18 1098 1121 [rn4:9:83961446-83961469:-] 0.5629 128 6 -11.97 -0.1339 MIMAT0012828 rno-miR-362 316575 Trip12 uaaGUGUGGAUCCAA----GGUUC-CUAa | |||:|:| || ||||| ||| gagCUCACUUGGCUUUCUGCCAAGUGAUa 2 22 707 735 [rn4:9:83961832-83961860:-] 0.5629 124 0 -18.95 -0.2351 MIMAT0012830 rno-miR-504 316575 Trip12 cugucucacgucuGGUCCCAGa |||||||| cucucgucuucucCCAGGGUCa 2 10 988 1009 [rn4:9:83961558-83961579:-] 0.5629 145 7 -15.95 -0.5415 MIMAT0012831 rno-miR-544 316575 Trip12 cucGAACGA----UUUUU-----ACGUCUua ||||:| :|||| |||||| ccuCUUGUUGUAGGAAAACGGCUUGCAGAuu 3 20 94 124 [rn4:9:83962443-83962473:-] 0.6961 121 0 -13.89 -0.1074 MIMAT0012839 rno-miR-668 316575 Trip12 ccaucacccggcuCGGCUCACUgu | :|||||| uuaucauuuauuuGAUGAGUGAag 3 12 211 234 [rn4:9:83962333-83962356:-] 0.6961 123 0 -11.58 -0.3104 MIMAT0012839 rno-miR-668 316575 Trip12 ccaucacccggcuCGGCUCACUgu | :|||||| uuaucauuuauuuGAUGAGUGAag 3 12 211 234 [rn4:9:83962333-83962356:-] 0.6961 123 0 -11.58 -0.1949 MIMAT0012843 rno-miR-876 316575 Trip12 accacuaAGUGU--CUCUUUAGgu ||||| ||||||| -------UCACAACAAGAAAUCaa 3 16 1 17 [rn4:9:83962550-83962566:-] 0.7639 134 0 -12.10 -0.6558 MIMAT0012843 rno-miR-876 316575 Trip12 accacuaAGUGU--CUCUUUAGgu ||||| ||||||| -------UCACAACAAGAAAUCaa 3 16 1 17 [rn4:9:83962550-83962566:-] 0.7639 134 0 -12.10 -0.3419 MIMAT0012848 rno-miR-294 316575 Trip12 ucUAUCCCGG--AGGUAAAACUc ||| |||| ||||||||| uuAUAUGGCCAAACCAUUUUGAa 2 20 849 871 [rn4:9:83961696-83961718:-] 0.5629 166 7 -18.29 -0.6314 MIMAT0012849 rno-miR-295 316575 Trip12 cuucacACGGGGUGUAAACUca | :| : :|||||| uuaaauUAUCAUUUAUUUGAug 3 17 206 227 [rn4:9:83962340-83962361:-] 0.6961 124 0 -7.60 -0.1773 MIMAT0012849 rno-miR-295 316575 Trip12 cuucacACGGGGUGUAAACUca | :| : :|||||| uuaaauUAUCAUUUAUUUGAug 3 17 206 227 [rn4:9:83962340-83962361:-] 0.6961 124 0 -7.60 -0.1071 MIMAT0000553 rno-miR-324-5p 316575 Trip12 uguggUUACGGGAUCCCCUACGc ||| ::| | ||||||: ugugaAAU-UUCAAAGGGAUGUu 2 19 254 275 [rn4:9:83962292-83962313:-] 0.6961 136 0 -11.42 -0.1135 MIMAT0000566 rno-miR-329 316575 Trip12 uuuuUCCAAU--CGACCC-ACACAa || ||| ||||| ||||| gugcAGUUUAAUUCUGGGCUGUGUg 2 19 304 328 [rn4:9:83962239-83962263:-] 0.6961 125 0 -15.77 -0.7486 MIMAT0000589 rno-miR-342-3p 316575 Trip12 ugcccACGCUAAAGACACACUcu ||| || |||||||| uaacuUGC-UUUGCUGUGUGAaa 3 19 239 260 [rn4:9:83962307-83962328:-] 0.6961 140 0 -13.90 -0.1426 MIMAT0000589 rno-miR-342-3p 316575 Trip12 ugcccaCGCUAAAGACAC-ACUCu || ||| :|||| |||| ccuaaaGC-AUUGUUGUGAUGAGg 2 18 163 185 [rn4:9:83962382-83962404:-] 0.6961 123 0 -15.42 -1.0613 MIMAT0000589 rno-miR-342-3p 316575 Trip12 ugcccACGCUAAAGACACACUcu ||| || |||||||| uaacuUGC-UUUGCUGUGUGAaa 3 19 239 260 [rn4:9:83962307-83962328:-] 0.6961 140 0 -13.90 -0.1163 MIMAT0000589 rno-miR-342-3p 316575 Trip12 ugcccaCGCUAAAGACAC-ACUCu || ||| :|||| |||| ccuaaaGC-AUUGUUGUGAUGAGg 2 18 163 185 [rn4:9:83962382-83962404:-] 0.6961 123 0 -15.42 -0.9099 MIMAT0000600 rno-miR-129 316575 Trip12 cguuCGGGU-CUGGCGUUUUUc |||:: || ||||||: gucuGCCUGUUACAGCAAAAGa 2 18 19 40 [rn4:9:83962527-83962548:-] 0.6961 136 0 -11.43 -0.2406 MIMAT0000600 rno-miR-129 316575 Trip12 cguuCGGGU-CUGGCGUUUUUc |||:: || ||||||: gucuGCCUGUUACAGCAAAAGa 2 18 19 40 [rn4:9:83962527-83962548:-] 0.6961 136 0 -11.43 -0.1498 MIMAT0000606 rno-miR-7a 316575 Trip12 uguuguuuuagugaucAGAAGGu |||||| aagucugcaguuuguuUCUUCCa 2 8 342 364 [rn4:9:83962203-83962225:-] 0.6961 120 6 -12.03 -0.2039 MIMAT0000780 rno-miR-7b 316575 Trip12 uguuguuuuaguguucAGAAGGu |||||| aagucugcaguuuguuUCUUCCa 2 8 342 364 [rn4:9:83962203-83962225:-] 0.6961 120 6 -13.62 -0.2039 MIMAT0000795 rno-miR-25 316575 Trip12 agucuggcucuguucACGUUAc |||||| cucauuucucagaucUGCAAUa 2 8 1088 1109 [rn4:9:83961458-83961479:-] 0.5629 120 6 -11.30 -0.1191 MIMAT0000800 rno-miR-28 316575 Trip12 gagUUAUCUGACACUCGAG-GAa ||||| : |||||| || uaaAAUAGUUACAGAGCUCACUu 2 20 694 716 [rn4:9:83961851-83961873:-] 0.5629 123 0 -15.93 -0.3431 MIMAT0000804 rno-miR-30c 316575 Trip12 cgacucucacauccuACAAAUgu |||||| ucuuuagcaaguucuUGUUUAaa 3 9 188 210 [rn4:9:83962357-83962379:-] 0.6961 120 0 -4.55 -0.3770 MIMAT0000804 rno-miR-30c 316575 Trip12 cgACUCUCACAUCC-UACAAAUGu ||| | |||| ||||||| agUGAUACACUAGGUCUGUUUACa 2 22 729 752 [rn4:9:83961815-83961838:-] 0.5629 156 7 -15.43 -0.4177 MIMAT0000804 rno-miR-30c 316575 Trip12 cgacucucacauccuACAAAUgu |||||| ucuuuagcaaguucuUGUUUAaa 3 9 188 210 [rn4:9:83962357-83962379:-] 0.6961 120 0 -4.55 -0.2444 MIMAT0000805 rno-miR-30e 316575 Trip12 gaAGGUCAGUUC--CUACAAAUgu |::|| |||| |||||| ucUUUAG-CAAGUUCUUGUUUAaa 3 21 188 210 [rn4:9:83962357-83962379:-] 0.6961 129 0 -11.32 -0.3770 MIMAT0000805 rno-miR-30e 316575 Trip12 gaAGGUCAGUUCCUACAAAUGu | || | |:| ||||||| gaUACACU-AGGUCUGUUUACa 2 21 732 752 [rn4:9:83961815-83961835:-] 0.5629 150 7 -13.27 -0.4177 MIMAT0000805 rno-miR-30e 316575 Trip12 gaAGGUCAGUUC--CUACAAAUgu |::|| |||| |||||| ucUUUAG-CAAGUUCUUGUUUAaa 3 21 188 210 [rn4:9:83962357-83962379:-] 0.6961 129 0 -11.32 -0.2444 MIMAT0000806 rno-miR-30b-5p 316575 Trip12 ucgacucacauccuACAAAUgu |||||| cuuuagcaaguucuUGUUUAaa 3 9 189 210 [rn4:9:83962357-83962378:-] 0.6961 120 0 -6.20 -0.3770 MIMAT0000806 rno-miR-30b-5p 316575 Trip12 ucgacucacAUCC-UACAAAUGu |||| ||||||| gugauacacUAGGUCUGUUUACa 2 14 730 752 [rn4:9:83961815-83961837:-] 0.5629 148 7 -14.39 -0.4177 MIMAT0000806 rno-miR-30b-5p 316575 Trip12 ucgacucacauccuACAAAUgu |||||| cuuuagcaaguucuUGUUUAaa 3 9 189 210 [rn4:9:83962357-83962378:-] 0.6961 120 0 -6.20 -0.2444 MIMAT0000807 rno-miR-30d 316575 Trip12 gaaggucagccccuACAAAUgu |||||| cuuuagcaaguucuUGUUUAaa 3 9 189 210 [rn4:9:83962357-83962378:-] 0.6961 120 0 -6.47 -0.3770 MIMAT0000807 rno-miR-30d 316575 Trip12 gaAGGUCAGCCCCUACAAAUGu | || | || ||||||| gaUACACU-AGGUCUGUUUACa 2 21 732 752 [rn4:9:83961815-83961835:-] 0.5629 146 7 -12.19 -0.4114 MIMAT0000807 rno-miR-30d 316575 Trip12 gaaggucagccccuACAAAUgu |||||| cuuuagcaaguucuUGUUUAaa 3 9 189 210 [rn4:9:83962357-83962378:-] 0.6961 120 0 -6.47 -0.2444 MIMAT0000808 rno-miR-30a 316575 Trip12 gaAGGUCAGCUC--CUACAAAUgu |::|| | || |||||| ucUUUAG-CAAGUUCUUGUUUAaa 3 21 188 210 [rn4:9:83962357-83962379:-] 0.6961 121 0 -7.81 -0.3770 MIMAT0000808 rno-miR-30a 316575 Trip12 gaAGGUCAGCUCCUACAAAUGu | || | | | ||||||| gaUACACUAG-GUCUGUUUACa 2 21 732 752 [rn4:9:83961815-83961835:-] 0.5629 146 7 -13.17 -0.4146 MIMAT0000808 rno-miR-30a 316575 Trip12 gaAGGUCAGCUC--CUACAAAUgu |::|| | || |||||| ucUUUAG-CAAGUUCUUGUUUAaa 3 21 188 210 [rn4:9:83962357-83962379:-] 0.6961 121 0 -7.81 -0.2444 MIMAT0000811 rno-miR-32 316575 Trip12 acguuGAAUCAUUACACGUUAu || || || |||||| cauuuCUCAG--AUCUGCAAUa 2 18 1090 1109 [rn4:9:83961458-83961477:-] 0.5629 122 6 -7.72 -0.1180 MIMAT0000816 rno-miR-92a 316575 Trip12 guccggcccuguucACGUUAu |||||| ucauuucucagaucUGCAAUa 2 8 1089 1109 [rn4:9:83961458-83961478:-] 0.5629 120 6 -9.28 -0.1215 MIMAT0000828 rno-miR-124 316575 Trip12 ccguaaguGGCGCACGGAAu |:|:||||||| aagggguuCUGUGUGCCUUc 2 13 430 449 [rn4:9:83962118-83962137:-] 0.6961 152 7 -22.41 -0.5084 MIMAT0004729 rno-miR-125a-3p 316575 Trip12 ccgaggguucuuggAGUGGACa ||||||| auuucuuuucugugUCACCUGa 2 9 52 73 [rn4:9:83962494-83962515:-] 0.6961 140 7 -15.95 -0.9994 MIMAT0004729 rno-miR-125a-3p 316575 Trip12 ccgaggguucuuggAGUGGACa ||||||| auuucuuuucugugUCACCUGa 2 9 52 73 [rn4:9:83962494-83962515:-] 0.6961 140 7 -15.95 -0.8341 MIMAT0000846 rno-miR-141 316575 Trip12 gguAGAA-AUG--GUC-UGUCA-CAAu |||| ||| || ||||| ||| aacUCUUGUACAUAAGUACAGUCGUUa 2 20 370 396 [rn4:9:83962171-83962197:-] 0.6961 120 0 -15.98 -1.0902 MIMAT0000852 rno-miR-146a 316575 Trip12 uuggguaccuuaagUCAAGAGu ||||||: agguuucuuuagcaAGUUCUUg 2 9 183 204 [rn4:9:83962363-83962384:-] 0.6961 124 0 -7.60 -0.2917 MIMAT0000852 rno-miR-146a 316575 Trip12 uuggguaccuuaagUCAAGAGu ||||||: agguuucuuuagcaAGUUCUUg 2 9 183 204 [rn4:9:83962363-83962384:-] 0.6961 124 0 -7.60 -0.1837 MIMAT0000869 rno-miR-194 316575 Trip12 aggUGUACCU-CA-AC-GACAAUGu | || | || || ||||||| aagAAAUCAAUGUCUGCCUGUUACa 2 20 8 32 [rn4:9:83962535-83962559:-] 0.6961 144 7 -13.92 -1.3154 MIMAT0000869 rno-miR-194 316575 Trip12 aggUGUACCU-CA-AC-GACAAUGu | || | || || ||||||| aagAAAUCAAUGUCUGCCUGUUACa 2 20 8 32 [rn4:9:83962535-83962559:-] 0.6961 144 7 -13.92 -0.9105 MIMAT0000876 rno-miR-203 316575 Trip12 gaucaccaggauuugUAAAGUg |||||| gcuuugcugugugaaAUUUCAa 2 8 245 266 [rn4:9:83962301-83962322:-] 0.6961 120 6 -7.77 -0.1047 MIMAT0000876 rno-miR-203 316575 Trip12 gaucaccaggauuugUAAAGUg |||||| gcuuugcugugugaaAUUUCAa 2 8 245 266 [rn4:9:83962301-83962322:-] 0.6961 120 6 -7.77 -0.1001 MIMAT0000877 rno-miR-204 316575 Trip12 ucCGUAUCCUACUGUUUCCCUu |::|: || |||||||| cuGUGUGAAAUUUCAAAGGGAu 2 21 251 272 [rn4:9:83962295-83962316:-] 0.6961 156 7 -13.98 -1.0084 MIMAT0000877 rno-miR-204 316575 Trip12 ucCGUAUCCUACUGUUUCCCUu |::|: || |||||||| cuGUGUGAAAUUUCAAAGGGAu 2 21 251 272 [rn4:9:83962295-83962316:-] 0.6961 156 7 -13.98 -0.8495 MIMAT0000881 rno-miR-210 316575 Trip12 agucggcgacagUGUGCGUGUc :|||||||| uuuuuaaauacaGCACGCACAg 2 11 538 559 [rn4:9:83962008-83962029:-] 0.5629 146 7 -20.99 -0.3095 MIMAT0000882 rno-miR-211 316575 Trip12 ucCGUUUCCUACUGUUUCCCUu |::|| || |||||||| guGUGAA--AUUUCAAAGGGAu 2 21 253 272 [rn4:9:83962295-83962314:-] 0.6961 153 7 -12.50 -1.0084 MIMAT0000882 rno-miR-211 316575 Trip12 ucCGUUUCCUACUGUUUCCCUu |::|| || |||||||| guGUGAA--AUUUCAAAGGGAu 2 21 253 272 [rn4:9:83962295-83962314:-] 0.6961 153 7 -12.50 -0.8495 MIMAT0000889 rno-miR-219-5p 316575 Trip12 ucuuaACGCA-AACCUGUU-AGu ||:|| || ||||| || acucaUGUGUAUUUGACAACUCu 2 17 398 420 [rn4:9:83962147-83962169:-] 0.6961 123 0 -10.07 -0.9510 MIMAT0000889 rno-miR-219-5p 316575 Trip12 ucuuaacgcaaaccUGUUAGu |||||| auucaaauuaagauACAAUCu 2 8 591 611 [rn4:9:83961956-83961976:-] 0.5629 120 6 -4.90 -0.1404 MIMAT0001628 rno-miR-433 316575 Trip12 uguggcuccucgggUAGUACUa ||||||| agcaaaagaaaaaaAUCAUGAu 2 9 32 53 [rn4:9:83962514-83962535:-] 0.6961 140 7 -10.87 -1.2067 MIMAT0001628 rno-miR-433 316575 Trip12 uguggcuccucgggUAGUACUa ||||||| agcaaaagaaaaaaAUCAUGAu 2 9 32 53 [rn4:9:83962514-83962535:-] 0.6961 140 7 -10.87 -1.1104 MIMAT0003123 rno-miR-377 316575 Trip12 gguuUUCAACGGAA--ACACACUa || ||||:|| ||||||| uuuuAACUUGCUUUGCUGUGUGAa 2 19 236 259 [rn4:9:83962308-83962331:-] 0.6961 165 7 -14.72 -1.0253 MIMAT0003123 rno-miR-377 316575 Trip12 gguuUUCAACGGAA--ACACACUa || ||||:|| ||||||| uuuuAACUUGCUUUGCUGUGUGAa 2 19 236 259 [rn4:9:83962308-83962331:-] 0.6961 165 7 -14.72 -0.9421 MIMAT0003176 rno-miR-539 316575 Trip12 ugugugguuccuAUUAAAGAGg | ||||||| uuguuuguguucUCAUUUCUCa 2 11 1077 1098 [rn4:9:83961469-83961490:-] 0.5629 142 7 -7.13 -0.7773 MIMAT0003179 rno-miR-542-3p 316575 Trip12 aaagucaauaguuagACAGUGu |||||| augauuucuuuucugUGUCACc 2 8 49 70 [rn4:9:83962497-83962518:-] 0.6961 120 6 -8.47 -0.1119 MIMAT0003193 rno-miR-494 316575 Trip12 uccaaAGGGCACAUACAAAGu || || ||||||| aaucaUCAGGUUAAUGUUUCu 2 17 1109 1129 [rn4:9:83961438-83961458:-] 0.5629 148 7 -10.43 -0.9938 MIMAT0003199 rno-miR-381 316575 Trip12 cucUCGAACGGGAACAUAu ||| |::||||| | uuuAGCAAGUUCUUGUUUa 2 17 190 208 [rn4:9:83962359-83962377:-] 0.6961 124 0 -11.97 -0.1996 MIMAT0003199 rno-miR-381 316575 Trip12 cucucgaacGGGAACAUau |:|||||| caaagacaaCUCUUGUAca 3 11 363 381 [rn4:9:83962186-83962204:-] 0.6961 126 0 -9.82 -0.1024 MIMAT0003199 rno-miR-381 316575 Trip12 cucUCGAACGGGAACAUAu ||| |::||||| | uuuAGCAAGUUCUUGUUUa 2 17 190 208 [rn4:9:83962359-83962377:-] 0.6961 124 0 -11.97 -0.1218 MIMAT0003208 rno-miR-374 316575 Trip12 gugaAUCGUCCA-ACAUAAUAUa |:|: ||| | ||||||| gggcUGGUCGGUAUUUAUUAUAu 2 19 832 854 [rn4:9:83961713-83961735:-] 0.5629 157 7 -11.49 -0.4293 MIMAT0003210 rno-miR-363 316575 Trip12 augucuaccuauggcACGUUAa |||||| cucauuucucagaucUGCAAUa 2 8 1088 1109 [rn4:9:83961458-83961479:-] 0.5629 120 6 -8.56 -0.1215 MIMAT0003381 rno-miR-499 316575 Trip12 uuUGUAGUGACGUUCAG-AAUu |||| | | | |||| ||| guACAUAAGUAC-AGUCGUUAa 2 20 377 397 [rn4:9:83962170-83962190:-] 0.6961 121 0 -9.03 -0.9436 MIMAT0005307 rno-miR-375 316575 Trip12 agugcgcucggcuugCUUGUUu |||||| uguuuuuucaggcugGAACAAu 2 8 272 293 [rn4:9:83962274-83962295:-] 0.6961 120 6 -10.81 -0.1224 MIMAT0005309 rno-miR-384-5p 316575 Trip12 uguAACGGAUCCUU----AACAAAUgu || ::||| || ||||||| gguUUCUUUAGCAAGUUCUUGUUUAaa 3 21 184 210 [rn4:9:83962357-83962383:-] 0.6961 135 0 -7.09 -0.3740 MIMAT0005309 rno-miR-384-5p 316575 Trip12 ugUAACGGAUCCUUAACAAAUGu || ||||| ||||||| ugAUACACUAGG-UCUGUUUACa 2 22 731 752 [rn4:9:83961815-83961836:-] 0.5629 151 7 -17.88 -0.4021 MIMAT0005309 rno-miR-384-5p 316575 Trip12 uguAACGGAUCCUU----AACAAAUgu || ::||| || ||||||| gguUUCUUUAGCAAGUUCUUGUUUAaa 3 21 184 210 [rn4:9:83962357-83962383:-] 0.6961 135 0 -7.09 -0.2423 MIMAT0005310 rno-miR-384-3p 316575 Trip12 uaacacuuguuaaagAUCCUUa |||||| uccucccucuuguugUAGGAAa 2 8 89 110 [rn4:9:83962457-83962478:-] 0.6961 120 6 -7.67 -0.1774 MIMAT0005310 rno-miR-384-3p 316575 Trip12 uaacacuuguuaaagAUCCUUa |||||| uccucccucuuguugUAGGAAa 2 8 89 110 [rn4:9:83962457-83962478:-] 0.6961 120 6 -7.67 -0.1082 MIMAT0005320 rno-miR-495 316575 Trip12 uucUUCACGUGGUACAAACAAa |||| | || ||||||| gcuAAGU-CUGCA-GUUUGUUu 2 20 339 358 [rn4:9:83962209-83962228:-] 0.6961 151 7 -11.10 -0.8555 MIMAT0005320 rno-miR-495 316575 Trip12 uucuucACGUGGUACAAACAAa | | || |||||||| cucccuUACUCC-UGUUUGUUu 2 17 946 966 [rn4:9:83961601-83961621:-] 0.5629 150 7 -12.92 -0.7248 MIMAT0005320 rno-miR-495 316575 Trip12 uucuucACGUGGUACAAACAAa || :: |||||||| gguguuUGGUUUUUGUUUGUUu 2 17 509 530 [rn4:9:83962037-83962058:-] 0.5629 148 7 -11.32 -1.0318 MIMAT0005335 rno-miR-758 316575 Trip12 ccaaucaccugguccAGUGUUu |||||| ---------------UCACAAc 2 8 1 7 [rn4:9:83962560-83962566:-] 0.8317 120 6 -5.81 -0.3746 MIMAT0005335 rno-miR-758 316575 Trip12 ccaaucaccugguccAGUGUUu |||||| ---------------UCACAAc 2 8 1 7 [rn4:9:83962560-83962566:-] 0.8317 120 6 -5.81 -0.3008 MIMAT0005340 rno-miR-92b 316575 Trip12 ccuccggcccugcucACGUUAu |||||| cucauuucucagaucUGCAAUa 2 8 1088 1109 [rn4:9:83961458-83961479:-] 0.5629 120 6 -7.90 -0.1215 MIMAT0005595 rno-miR-146b 316575 Trip12 ugucggauaccuuaagUCAAGAGu ||||||: ugagguuucuuuagcaAGUUCUUg 2 9 181 204 [rn4:9:83962363-83962386:-] 0.6961 124 0 -8.97 -0.2917 MIMAT0005595 rno-miR-146b 316575 Trip12 ugucggauaccuuaagUCAAGAGu ||||||: ugagguuucuuuagcaAGUUCUUg 2 9 181 204 [rn4:9:83962363-83962386:-] 0.6961 124 0 -8.97 -0.1837

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G122316 Trip12 Rattus norvegicus 316575

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Trip12 RAID00137047 rno-miR-499-5p miRNA MIMAT0003381 Trip12 mRNA 316575 Prediction 0.1828 Trip12 RAID00244213 rno-miR-494-3p miRNA MIMAT0003193 Trip12 mRNA 316575 Prediction 0.1828 Trip12 RAID00267072 rno-miR-194-5p miRNA MIMAT0000869 Trip12 mRNA 316575 Prediction 0.2202 Trip12 RAID00307507 rno-miR-6216 miRNA MIMAT0024856 Trip12 mRNA 316575 Prediction 0.1828 Trip12 RAID00354364 rno-miR-129-5p miRNA MIMAT0000600 Trip12 mRNA 316575 Prediction 0.1828 Trip12 RAID00386820 rno-miR-433-3p miRNA MIMAT0001628 Trip12 mRNA 316575 Prediction 0.2202 Trip12 RAID00442811 rno-miR-203b-3p miRNA MIMAT0017800 Trip12 mRNA 316575 Prediction 0.1828 Trip12 RAID00595594 rno-miR-15a-3p miRNA MIMAT0035729 Trip12 mRNA 316575 Prediction 0.1828 Trip12 RAID00641695 rno-miR-210-3p miRNA MIMAT0000881 Trip12 mRNA 316575 Prediction 0.1828 Trip12 RAID00920108 rno-miR-92b-3p miRNA MIMAT0005340 Trip12 mRNA 316575 Prediction 0.2202 Trip12 RAID00922432 rno-let-7c-1-3p miRNA MIMAT0017087 Trip12 mRNA 316575 Prediction 0.1828 Trip12 RAID00980849 rno-miR-758-3p miRNA MIMAT0005335 Trip12 mRNA 316575 Prediction 0.1828 Trip12 RAID01082834 rno-miR-6333 miRNA MIMAT0025074 Trip12 mRNA 316575 Prediction 0.1828 Trip12 RAID01117270 rno-miR-377-3p miRNA MIMAT0003123 Trip12 mRNA 316575 Prediction 0.1828 Trip12 RAID01178184 rno-miR-204-5p miRNA MIMAT0000877 Trip12 mRNA 316575 Prediction 0.2202 Trip12 RAID01180298 rno-miR-324-5p miRNA MIMAT0000553 Trip12 mRNA 316575 Prediction 0.1828 Trip12 RAID01235657 rno-miR-449c-3p miRNA MIMAT0017804 Trip12 mRNA 316575 Prediction 0.1828 Trip12 RAID01324226 rno-miR-211-5p miRNA MIMAT0000882 Trip12 mRNA 316575 Prediction 0.2202 Trip12 RAID01420216 rno-miR-30c-2-3p miRNA MIMAT0005442 Trip12 mRNA 316575 Prediction 0.1828 Trip12 RAID01796225 rno-miR-28-5p miRNA MIMAT0000800 Trip12 mRNA 316575 Prediction 0.1828 Trip12 RAID01800479 rno-miR-146a-5p miRNA MIMAT0000852 Trip12 mRNA 316575 Prediction 0.1828 Trip12 RAID01849513 rno-miR-30d-5p miRNA MIMAT0000807 Trip12 mRNA 316575 Prediction 0.2202 Trip12 RAID01864304 rno-miR-384-5p miRNA MIMAT0005309 Trip12 mRNA 316575 Prediction 0.2202 Trip12 RAID01900052 rno-miR-6321 miRNA MIMAT0025059 Trip12 mRNA 316575 Prediction 0.1828 Trip12 RAID01973049 rno-miR-141-3p miRNA MIMAT0000846 Trip12 mRNA 316575 Prediction 0.1828 Trip12 RAID01989397 rno-miR-329-3p miRNA MIMAT0000566 Trip12 mRNA 316575 Prediction 0.1828 Trip12 RAID02000368 rno-miR-30c-1-3p miRNA MIMAT0004719 Trip12 mRNA 316575 Prediction 0.1828 Trip12 RAID02013948 rno-miR-539-5p miRNA MIMAT0003176 Trip12 mRNA 316575 Prediction 0.1828 Trip12 RAID02040997 rno-miR-188-5p miRNA MIMAT0005301 Trip12 mRNA 316575 Prediction 0.1828 Trip12 RAID02140909 rno-miR-495 miRNA MIMAT0005320 Trip12 mRNA 316575 Prediction 0.2202 Trip12 RAID02155390 rno-miR-7b miRNA MIMAT0000780 Trip12 mRNA 316575 Prediction 0.1828 Trip12 RAID02452776 rno-miR-3120 miRNA MIMAT0017900 Trip12 mRNA 316575 Prediction 0.1828 Trip12 RAID02453477 rno-miR-330-3p miRNA MIMAT0000568 Trip12 mRNA 316575 Prediction 0.1828 Trip12 RAID02535134 rno-miR-30e-5p miRNA MIMAT0000805 Trip12 mRNA 316575 Prediction 0.2202 Trip12 RAID02604614 rno-miR-92a-3p miRNA MIMAT0000816 Trip12 mRNA 316575 Prediction 0.2202 Trip12 RAID02623986 rno-miR-25-3p miRNA MIMAT0000795 Trip12 mRNA 316575 Prediction 0.1828 Trip12 RAID02638357 rno-miR-204-3p miRNA MIMAT0004739 Trip12 mRNA 316575 Prediction 0.1828 Trip12 RAID02709798 rno-miR-30a-5p miRNA MIMAT0000808 Trip12 mRNA 316575 Prediction 0.2202 Trip12 RAID02975673 rno-miR-672-3p miRNA MIMAT0017312 Trip12 mRNA 316575 Prediction 0.1828 Trip12 RAID03035417 rno-miR-325-3p miRNA MIMAT0004639 Trip12 mRNA 316575 Prediction 0.1828 Trip12 RAID03150222 rno-miR-214-5p miRNA MIMAT0017159 Trip12 mRNA 316575 Prediction 0.1828 Trip12 RAID03247306 rno-miR-125a-3p miRNA MIMAT0004729 Trip12 mRNA 316575 Prediction 0.2202 Trip12 RAID03250232 rno-miR-219a-5p miRNA MIMAT0000889 Trip12 mRNA 316575 Prediction 0.1828 Trip12 RAID03311737 rno-miR-542-3p miRNA MIMAT0003179 Trip12 mRNA 316575 Prediction 0.1828 Trip12 RAID03358893 rno-miR-294 miRNA MIMAT0012848 Trip12 mRNA 316575 Prediction 0.1828 Trip12 RAID03381175 rno-miR-30b-5p miRNA MIMAT0000806 Trip12 mRNA 316575 Prediction 0.2202 Trip12 RAID03385366 rno-miR-374-5p miRNA MIMAT0003208 Trip12 mRNA 316575 Prediction 0.1828 Trip12 RAID03405676 rno-miR-342-3p miRNA MIMAT0000589 Trip12 mRNA 316575 Prediction 0.1828 Trip12 RAID03507479 rno-miR-137-3p miRNA MIMAT0000843 Trip12 mRNA 316575 Prediction 0.1828 Trip12 RAID03523704 rno-miR-375-3p miRNA MIMAT0005307 Trip12 mRNA 316575 Prediction 0.1828 Trip12 RAID03532874 rno-miR-203a-3p miRNA MIMAT0000876 Trip12 mRNA 316575 Prediction 0.1828 Trip12 RAID03632074 rno-miR-7a-5p miRNA MIMAT0000606 Trip12 mRNA 316575 Prediction 0.1828 Trip12 RAID03664045 rno-miR-883-3p miRNA MIMAT0005290 Trip12 mRNA 316575 Prediction 0.1828 Trip12 RAID03669217 rno-miR-146b-5p miRNA MIMAT0005595 Trip12 mRNA 316575 Prediction 0.1828 Trip12 RAID03711513 rno-miR-124-3p miRNA MIMAT0000828 Trip12 mRNA 316575 Prediction 0.2202 Trip12 RAID03734803 rno-miR-96-3p miRNA MIMAT0017110 Trip12 mRNA 316575 Prediction 0.1828 Trip12 RAID03767930 rno-miR-383-3p miRNA MIMAT0017197 Trip12 mRNA 316575 Prediction 0.1828 Trip12 RAID03793201 rno-miR-384-3p miRNA MIMAT0005310 Trip12 mRNA 316575 Prediction 0.1828 Trip12 RAID03800483 rno-miR-381-3p miRNA MIMAT0003199 Trip12 mRNA 316575 Prediction 0.1828 Trip12 RAID03899005 rno-miR-363-3p miRNA MIMAT0003210 Trip12 mRNA 316575 Prediction 0.1828 Trip12 RAID03986792 rno-miR-3557-3p miRNA MIMAT0017820 Trip12 mRNA 316575 Prediction 0.1828 Trip12 RAID03989264 rno-miR-32-5p miRNA MIMAT0000811 Trip12 mRNA 316575 Prediction 0.2202 Trip12 RAID04036327 rno-miR-30c-5p miRNA MIMAT0000804 Trip12 mRNA 316575 Prediction 0.2202