DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004646 rno-miR-338* 311373 Trim69 gugagucgugguccuAUAACAa |||||| ----uuaaguuauacUAUUGUa 2 8 1 18 [rn4:3:108963879-108963896:+] 0.6013 120 6 -3.11 -0.3945 MIMAT0000599 rno-miR-349 311373 Trim69 ucucCA-AUUCUGUCGUCCCGac || ||| |: |||||| uauuGUAUAA-AU-UCAGGGCgu 3 19 12 32 [rn4:3:108963890-108963910:+] 0.6013 121 0 -12.00 -0.2427 MIMAT0004705 rno-let-7b* 311373 Trim69 cccUUCCGUCAU-CCAACAUAUc ||| :| || ||||||| -uuAAGUUA-UACUAUUGUAUAa 2 20 1 21 [rn4:3:108963879-108963899:+] 0.6013 144 7 -4.41 -1.1994 MIMAT0000893 rno-miR-290 311373 Trim69 uuUUUCACGGGGGUAUCA-AACUc |::| |:: ::| ||| |||| ucAGGGCGUUAUUAAAGUAUUGAa 2 22 24 47 [rn4:3:108963902-108963925:+] 0.6013 121 0 -8.45 -1.2897 MIMAT0000608 rno-miR-351 311373 Trim69 aguccgaguuucccgagGAGUCCCu :|||||| uuauacuauuguauaaaUUCAGGGc 2 9 6 30 [rn4:3:108963884-108963908:+] 0.6013 124 6 -14.82 -0.2500 MIMAT0000829 rno-miR-125a-5p 311373 Trim69 aguguccAAUUUCCCAGAGUCCCu ||: | :|||||| uauacuaUUGUAUAAAUUCAGGGc 2 18 7 30 [rn4:3:108963885-108963908:+] 0.6013 125 6 -13.92 -0.2434 MIMAT0000830 rno-miR-125b-5p 311373 Trim69 agUGUUCA-AUCCCAGAGUCCCu || | | || :|||||| auACUAUUGUAUAAAUUCAGGGc 2 21 8 30 [rn4:3:108963886-108963908:+] 0.6013 127 6 -12.69 -0.2478 MIMAT0000873 rno-miR-200c 311373 Trim69 gguaguaaugggccgUCAUAAu |||||| ucagggcguuauuaaAGUAUUg 2 8 24 45 [rn4:3:108963902-108963923:+] 0.6013 120 6 -14.57 -0.1021 MIMAT0001538 rno-miR-429 311373 Trim69 ugCCGUAAUGGUCUGUCAUAAu |||:|||:: | |||||| agGGCGUUAUU--AAAGUAUUg 2 21 26 45 [rn4:3:108963904-108963923:+] 0.6013 133 6 -19.59 -0.1021 MIMAT0003199 rno-miR-381 311373 Trim69 cucUCGA-ACGGGAACAUAu ||:| | |: |||||| uuaAGUUAUACUAUUGUAUa 2 17 1 20 [rn4:3:108963879-108963898:+] 0.6013 123 6 -9.14 -0.1898 MIMAT0005284 rno-miR-874 311373 Trim69 agccagggagcccGGUCCCGUc :||||||: cuauuguauaaauUCAGGGCGu 2 10 11 32 [rn4:3:108963889-108963910:+] 0.6013 125 0 -15.74 -0.2515 MIMAT0005311 rno-miR-410 311373 Trim69 uguccgguagacaCAAUAUaa |||||| ---------uuaaGUUAUAcu 3 9 1 12 [rn4:3:108963879-108963890:+] 0.6013 120 0 -5.03 -0.1312

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G055848 Trim69 Rattus norvegicus 311373

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Trim69 RAID00515197 rno-miR-381-3p miRNA MIMAT0003199 Trim69 mRNA 311373 Prediction 0.1828 Trim69 RAID01020455 rno-miR-200c-3p miRNA MIMAT0000873 Trim69 mRNA 311373 Prediction 0.1828 Trim69 RAID01797862 rno-miR-410-3p miRNA MIMAT0005311 Trim69 mRNA 311373 Prediction 0.1828 Trim69 RAID01818841 rno-miR-874-3p miRNA MIMAT0005284 Trim69 mRNA 311373 Prediction 0.1828 Trim69 RAID02433829 rno-miR-125b-5p miRNA MIMAT0000830 Trim69 mRNA 311373 Prediction 0.1828 Trim69 RAID02503025 rno-miR-429 miRNA MIMAT0001538 Trim69 mRNA 311373 Prediction 0.1828 Trim69 RAID02840884 rno-miR-351-5p miRNA MIMAT0000608 Trim69 mRNA 311373 Prediction 0.1828 Trim69 RAID03281503 rno-miR-125a-5p miRNA MIMAT0000829 Trim69 mRNA 311373 Prediction 0.1828