DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004654 rno-miR-344-5p 308906 Trim5 ggACCUUAGAUCGGUCCUCGGACu | | || ||::| ||||||| ccUUGUAUAGAGUUAAGAGCCUGc 2 23 632 655 [rn4:1:162096579-162096602:-] 0.5495 162 7 -22.64 -1.1007 MIMAT0000610 rno-miR-352 308906 Trim5 augAUACGUUGGAUGAUGAGa ||| || | ||||||| augUAUAAAAACCACUACUCu 2 19 677 697 [rn4:1:162096537-162096557:-] 0.5495 158 7 -17.16 -0.9793 MIMAT0004705 rno-let-7b* 308906 Trim5 ccCUUCCGUCAUCCAACAUAUc |||| || ||||||| uuGAAGCCA--CCCUUGUAUAg 2 21 622 641 [rn4:1:162096593-162096612:-] 0.5495 145 7 -12.83 -0.1869 MIMAT0004705 rno-let-7b* 308906 Trim5 cccuuccgucauccaACAUAUc |||||| aaauaaucaagaauaUGUAUAa 2 8 663 684 [rn4:1:162096550-162096571:-] 0.5495 120 6 -3.28 -0.2963 MIMAT0004717 rno-miR-29b-2* 308906 Trim5 gauucggugguacacUUUGGUc |||||| caagaauauguauaaAAACCAc 2 8 670 691 [rn4:1:162096543-162096564:-] 0.5495 120 6 -10.47 -0.2360 MIMAT0004720 rno-miR-30e* 308906 Trim5 cgACAUUUGUAGGCUGACUUUc ||| |: || :|||||| cuUGUCUAU-UCAUGCUGAAAa 2 21 410 430 [rn4:1:162096804-162096824:-] 0.5520 134 6 -10.51 -0.1577 MIMAT0004722 rno-miR-30d* 308906 Trim5 cgucguuuguAGACUGACUUUc || :|||||| acuugucuauUCAUGCUGAAAa 2 13 409 430 [rn4:1:162096804-162096825:-] 0.5520 128 6 -8.48 -0.1577 MIMAT0000809 rno-miR-30a* 308906 Trim5 cgACGUUUGUAGGCUGACUUUc ||: |: || :|||||| cuUGUCUAU-UCAUGCUGAAAa 2 21 410 430 [rn4:1:162096804-162096824:-] 0.5520 130 6 -9.72 -0.1577 MIMAT0000831 rno-miR-126* 308906 Trim5 gcGCAUG-GUUUUCAUUAUUAc | |:| :|||| |||||| agCCUGCUUAAAAAAAAUAAUc 2 20 649 670 [rn4:1:162096564-162096585:-] 0.5495 130 6 -6.72 -0.1466 MIMAT0005446 rno-miR-219-2-3p 308906 Trim5 ugUCUA-CAGGUCGGUGUUAAGa :|:| ||:: :|||||||: uuGGGUCGUUU--UCACAAUUUg 2 21 744 764 [rn4:1:162096470-162096490:-] 0.5612 132 0 -11.82 -0.1119 MIMAT0003113 rno-miR-489 308906 Trim5 cgaCGGUAUAUACAC-UACAGUAa |:| |: ||||| ||||||| cugGUCCUG-AUGUGUAUGUCAUg 2 21 26 48 [rn4:1:162097186-162097208:-] 0.6319 161 7 -17.94 -0.3936 MIMAT0003115 rno-miR-207 308906 Trim5 uucccuccUCUCG-GUCCUCUUCg ||| : |||||||| uaggccaaAGAAUGAAGGAGAAGc 2 16 473 496 [rn4:1:162096738-162096761:-] 0.5520 146 7 -21.29 -0.7962 MIMAT0003175 rno-miR-543* 308906 Trim5 ucuucacguggcgcUUACAAa |||||| acaauuuguaaauaAAUGUUu 2 8 757 777 [rn4:1:162096457-162096477:-] 0.5612 120 6 -6.24 -0.1946 MIMAT0003175 rno-miR-543* 308906 Trim5 ucuucacguggcgcUUACAAa |||||| guuuacuaaaaauaAAUGUU- 2 8 774 793 [rn4:1:162096441-162096460:-] 0.5612 120 6 -2.65 -0.3365 MIMAT0005280 rno-miR-743b 308906 Trim5 agauaagUCAU--ACCACAGAAAg :||| | ||||||| uucuuggGGUAUUUUUUGUCUUUg 2 16 142 165 [rn4:1:162097069-162097092:-] 0.5183 142 7 -9.66 -0.8771 MIMAT0005286 rno-miR-878 308906 Trim5 agauGGGUCAUAC-CACAGUACg ||:: |:|| ||||||| ugguCCUGAUGUGUAUGUCAUGu 2 19 27 49 [rn4:1:162097185-162097207:-] 0.6319 153 7 -18.27 -0.3442 MIMAT0005286 rno-miR-878 308906 Trim5 agaugggucauaCCACAGUACg | ||||||| cuguuugcuucaGCUGUCAUGu 2 11 334 355 [rn4:1:162096879-162096900:-] 0.5520 142 7 -15.99 -0.1284 MIMAT0005319 rno-miR-484 308906 Trim5 uagcccuccccugaCUCGGACu ||||||| uuguauagaguuaaGAGCCUGc 2 9 634 655 [rn4:1:162096579-162096600:-] 0.5495 140 7 -14.51 -1.0984 MIMAT0005330 rno-miR-674-3p 308906 Trim5 aacaagacucuaccCUCGACAc ||||||| ugugcuccaccgcuGAGCUGUu 2 9 317 338 [rn4:1:162096896-162096917:-] 0.5520 140 7 -10.88 -0.2182 MIMAT0005330 rno-miR-674-3p 308906 Trim5 aacaagacucuaccCUCGACAc ||||||| aagaaaugcacccuGAGCUGUa 2 9 453 474 [rn4:1:162096760-162096781:-] 0.5520 140 7 -10.58 -0.6613 MIMAT0005332 rno-miR-708* 308906 Trim5 gaucUUCGAGUGUCAGA-UCAAc |:|| ||:| ||| |||| cucuAGGC-CAUAUUCUCAGUUu 2 19 122 143 [rn4:1:162097091-162097112:-] 0.5183 124 0 -13.34 -0.8212 MIMAT0012853 rno-miR-761 308906 Trim5 acacagUCAA-AGUGGGACGAcg |||| | |||||| guauagAGUUAAGAGCCUGCUua 3 17 636 658 [rn4:1:162096576-162096598:-] 0.5495 127 0 -11.70 -0.1527 MIMAT0000573 rno-miR-140 308906 Trim5 gaUGGUAUCCCAUUUUGGUGAc | :||: ||||||||| agAAUAUGUAUAAAAACCACUa 2 21 672 693 [rn4:1:162096541-162096562:-] 0.5495 152 7 -12.17 -1.2928 MIMAT0000581 rno-miR-338 308906 Trim5 agUUGUU--UUAG-UGACUACGACcu :|||| :|| |:| |||||| ucGACAACUUGUCUAUUCAUGCUGaa 3 22 403 428 [rn4:1:162096806-162096831:-] 0.5520 135 0 -16.86 -0.1620 MIMAT0000798 rno-miR-27b 308906 Trim5 cgUCUU--GAAUCGGUGACACUu |||| |||| :|||||||| caAGAAGCCUUA-UCACUGUGAc 2 20 501 522 [rn4:1:162096712-162096733:-] 0.5508 164 7 -18.49 -0.6015 MIMAT0000799 rno-miR-27a 308906 Trim5 cgcCUU--GAAUCGGUGACACUu ||| |||| :|||||||| caaGAAGCCUUA-UCACUGUGAc 2 19 501 522 [rn4:1:162096712-162096733:-] 0.5508 159 7 -16.73 -0.6015 MIMAT0000804 rno-miR-30c 308906 Trim5 cgacucucacauccUACAAAUGu |||||||| caauuuguaaauaaAUGUUUACu 2 10 758 780 [rn4:1:162096454-162096476:-] 0.5612 145 7 -8.21 -1.1562 MIMAT0000805 rno-miR-30e 308906 Trim5 gaagguCAGUU-CCUACAAAUGu || || |||||||| caauuuGUAAAUAAAUGUUUACu 2 17 758 780 [rn4:1:162096454-162096476:-] 0.5612 147 7 -8.84 -1.1522 MIMAT0000806 rno-miR-30b-5p 308906 Trim5 ucgacucacauccUACAAAUGu |||||||| aauuuguaaauaaAUGUUUACu 2 10 759 780 [rn4:1:162096454-162096475:-] 0.5612 145 7 -8.21 -1.1562 MIMAT0000807 rno-miR-30d 308906 Trim5 gaaggucagccccUACAAAUGu |||||||| aauuuguaaauaaAUGUUUACu 2 10 759 780 [rn4:1:162096454-162096475:-] 0.5612 145 7 -8.88 -1.1581 MIMAT0000808 rno-miR-30a 308906 Trim5 gaaggucagcuccUACAAAUGu |||||||| aauuuguaaauaaAUGUUUACu 2 10 759 780 [rn4:1:162096454-162096475:-] 0.5612 145 7 -7.82 -1.1562 MIMAT0000810 rno-miR-31 308906 Trim5 gucGAUACGGUCGU-AGAACGGa ||:|| || || ||||||| agaCUGUG-CAUCAGUCUUGCCu 2 20 541 562 [rn4:1:162096672-162096693:-] 0.5495 160 7 -24.70 -0.1328 MIMAT0000824 rno-miR-103 308906 Trim5 aguaucgGGACAUGU---UACGACga |:||| :| |||||| ucgacaaCUUGUCUAUUCAUGCUGaa 3 17 403 428 [rn4:1:162096806-162096831:-] 0.5520 127 0 -14.05 -0.1605 MIMAT0000826 rno-miR-107 308906 Trim5 acuaucgGGACAUGU---UACGACga |:||| :| |||||| ucgacaaCUUGUCUAUUCAUGCUGaa 3 17 403 428 [rn4:1:162096806-162096831:-] 0.5520 127 0 -12.97 -0.1605 MIMAT0000834 rno-miR-128 308906 Trim5 uuUCUCUGGCCAAGUGACACu ||| :|| |||||||| caAGAAGCCUUAUCACUGUGa 2 20 501 521 [rn4:1:162096713-162096733:-] 0.5508 159 7 -21.17 -1.1789 MIMAT0000848 rno-miR-142-3p 308906 Trim5 agGUAUUUCAUCCUUUGUGAUGu :||: | || || |||||| aaUAUGUA-UAAAAACCACUACu 2 22 674 695 [rn4:1:162096539-162096560:-] 0.5495 127 6 -8.63 -0.2249 MIMAT0000856 rno-miR-154 308906 Trim5 gcuuCCGU-UGUGCCUAUUGGAu | || :: | ||||||| agcuGUCAUGUCCCUAUAACCUc 2 19 345 367 [rn4:1:162096867-162096889:-] 0.5520 141 7 -11.69 -0.4972 MIMAT0000878 rno-miR-205 308906 Trim5 gucugaggccacCUUACUUCCu ||||||||| cuguaggccaaaGAAUGAAGGa 2 11 470 491 [rn4:1:162096743-162096764:-] 0.5520 150 7 -20.36 -0.7668 MIMAT0000885 rno-miR-214 308906 Trim5 gacggacagaCACGGACGAca | ||||||| auagaguuaaGAGCCUGCUua 3 12 638 658 [rn4:1:162096576-162096596:-] 0.5495 127 0 -11.89 -0.1587 MIMAT0001628 rno-miR-433 308906 Trim5 uguggcuccUCGGGUAG-UACUa :||||||| |||| accucauucGGCCCAUCAAUGAa 2 14 363 385 [rn4:1:162096849-162096871:-] 0.5520 125 0 -18.49 -0.7530 MIMAT0003119 rno-miR-224 308906 Trim5 auUUGCCUUGGUGAUCACUGAac |:| |:|||| |||||| gaAGCCUUAUCACU-GUGACUaa 3 22 504 525 [rn4:1:162096709-162096730:-] 0.5495 139 0 -18.19 -0.1023 MIMAT0003176 rno-miR-539 308906 Trim5 ugugugguuccuAUUAAAGAGg | ||||||| uggaaaauauauUCAUUUCUCu 2 11 104 125 [rn4:1:162097109-162097130:-] 0.5102 142 7 -8.35 -0.7766 MIMAT0003193 rno-miR-494 308906 Trim5 uccaaagggcacaUACAAAgu |||||| aauuuguaaauaaAUGUUUac 3 9 759 779 [rn4:1:162096455-162096475:-] 0.5612 120 0 -5.36 -0.2315 MIMAT0003199 rno-miR-381 308906 Trim5 cucucgaacGGGAACAUAu ||||||||| uugaagccaCCCUUGUAUa 2 11 622 640 [rn4:1:162096594-162096612:-] 0.5495 150 7 -18.25 -0.4579 MIMAT0003201 rno-miR-382 308906 Trim5 gcUUAGGUGGUGCUUGUUGAAg || : |: || ||||||| agAAGGUUCUUCG-ACAACUUg 2 21 393 413 [rn4:1:162096821-162096841:-] 0.5520 146 7 -12.48 -0.3612 MIMAT0005309 rno-miR-384-5p 308906 Trim5 ugUAACGGAUCCUUAACAAAUGu ||| : | || ||||||| caAUUUGUAAAUAAAUGUUUACu 2 22 758 780 [rn4:1:162096454-162096476:-] 0.5612 153 7 -6.84 -1.1581 MIMAT0005311 rno-miR-410 308906 Trim5 uguccgguagacacAAUAUAa |||||| auucaugcugaaaaUUAUAUa 2 8 417 437 [rn4:1:162096797-162096817:-] 0.5520 120 6 -7.08 -0.1016 MIMAT0005312 rno-miR-411 308906 Trim5 gcaugcgAUAUGCCAGAUGAu || |: ||:|||| uuguaaaUAAAU-GUUUACUa 2 15 762 781 [rn4:1:162096453-162096472:-] 0.5612 128 0 -11.63 -0.1012 MIMAT0005320 rno-miR-495 308906 Trim5 uucuucacgugguacAAACAAa |||||| aaaccacuacucuauUUUGUUc 2 8 685 706 [rn4:1:162096528-162096549:-] 0.5553 120 6 -6.53 -0.1363 MIMAT0005341 rno-miR-488 308906 Trim5 cugguUCUUUGUCGGAA-AGUu | ||: |||||| ||| gcaucACAAGAAGCCUUAUCAc 2 17 495 516 [rn4:1:162096718-162096739:-] 0.5508 124 0 -14.41 -0.4055

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Trim5 RAID00214377 rno-miR-466b-2-3p miRNA MIMAT0017286 Trim5 mRNA 308906 Prediction 0.1828 Trim5 RAID00352801 rno-miR-410-3p miRNA MIMAT0005311 Trim5 mRNA 308906 Prediction 0.1828 Trim5 RAID00372638 rno-miR-466b-4-3p miRNA MIMAT0037262 Trim5 mRNA 308906 Prediction 0.1828 Trim5 RAID00391782 rno-miR-30a-5p miRNA MIMAT0000808 Trim5 mRNA 308906 Prediction 0.1828 Trim5 RAID00518466 rno-miR-128-3p miRNA MIMAT0000834 Trim5 mRNA 308906 Prediction 0.2202 Trim5 RAID00542437 rno-miR-30b-5p miRNA MIMAT0000806 Trim5 mRNA 308906 Prediction 0.1828 Trim5 RAID00592859 rno-miR-214-3p miRNA MIMAT0000885 Trim5 mRNA 308906 Prediction 0.1828 Trim5 RAID00624128 rno-miR-382-5p miRNA MIMAT0003201 Trim5 mRNA 308906 Prediction 0.1828 Trim5 RAID00701846 rno-miR-381-3p miRNA MIMAT0003199 Trim5 mRNA 308906 Prediction 0.1828 Trim5 RAID00718248 rno-miR-30c-5p miRNA MIMAT0000804 Trim5 mRNA 308906 Prediction 0.1828 Trim5 RAID00835809 rno-miR-103-3p miRNA MIMAT0000824 Trim5 mRNA 308906 Prediction 0.1828 Trim5 RAID01318957 rno-miR-488-3p miRNA MIMAT0005341 Trim5 mRNA 308906 Prediction 0.1828 Trim5 RAID01428713 rno-miR-3596c miRNA MIMAT0017877 Trim5 mRNA 308906 Prediction 0.1828 Trim5 RAID01505610 rno-miR-433-3p miRNA MIMAT0001628 Trim5 mRNA 308906 Prediction 0.1828 Trim5 RAID01558537 rno-miR-154-5p miRNA MIMAT0000856 Trim5 mRNA 308906 Prediction 0.1828 Trim5 RAID01752164 rno-miR-27a-3p miRNA MIMAT0000799 Trim5 mRNA 308906 Prediction 0.1828 Trim5 RAID01762033 rno-miR-142-3p miRNA MIMAT0000848 Trim5 mRNA 308906 Prediction 0.1828 Trim5 RAID01908526 rno-miR-107-3p miRNA MIMAT0000826 Trim5 mRNA 308906 Prediction 0.1828 Trim5 RAID01978157 rno-miR-674-3p miRNA MIMAT0005330 Trim5 mRNA 308906 Prediction 0.1828 Trim5 RAID02011340 rno-miR-494-3p miRNA MIMAT0003193 Trim5 mRNA 308906 Prediction 0.1828 Trim5 RAID02071320 rno-miR-384-5p miRNA MIMAT0005309 Trim5 mRNA 308906 Prediction 0.1828 Trim5 RAID02145527 rno-miR-338-3p miRNA MIMAT0000581 Trim5 mRNA 308906 Prediction 0.1828 Trim5 RAID02166767 rno-miR-140-5p miRNA MIMAT0000573 Trim5 mRNA 308906 Prediction 0.2202 Trim5 RAID02976882 rno-miR-205 miRNA MIMAT0000878 Trim5 mRNA 308906 Prediction 0.1828 Trim5 RAID03038881 rno-miR-31a-5p miRNA MIMAT0000810 Trim5 mRNA 308906 Prediction 0.1828 Trim5 RAID03120066 rno-miR-539-5p miRNA MIMAT0003176 Trim5 mRNA 308906 Prediction 0.1828 Trim5 RAID03137742 rno-miR-30d-5p miRNA MIMAT0000807 Trim5 mRNA 308906 Prediction 0.1828 Trim5 RAID03140183 rno-miR-411-5p miRNA MIMAT0005312 Trim5 mRNA 308906 Prediction 0.1828 Trim5 RAID03301567 rno-miR-30e-5p miRNA MIMAT0000805 Trim5 mRNA 308906 Prediction 0.1828 Trim5 RAID03371593 rno-miR-138-2-3p miRNA MIMAT0017127 Trim5 mRNA 308906 Prediction 0.1828 Trim5 RAID03415877 rno-miR-495 miRNA MIMAT0005320 Trim5 mRNA 308906 Prediction 0.1828 Trim5 RAID03960180 rno-miR-224-5p miRNA MIMAT0003119 Trim5 mRNA 308906 Prediction 0.1828 Trim5 RAID04030116 rno-miR-27b-3p miRNA MIMAT0000798 Trim5 mRNA 308906 Prediction 0.1828