DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000574 rno-miR-140* 245925 Phrf1 ggcACCAAGAUGGGACACCAu || ||| | :|||||| cacUGUUUC--CAUUGUGGUc 2 19 145 163 [rn4:1:201456158-201456176:+] 0.5906 135 6 -14.51 -0.1950 MIMAT0005446 rno-miR-219-2-3p 245925 Phrf1 ugucuACAGGUCG-GUGUUAAga ||||: || :|||||| gcaccUGUCUUGCUUACAAUUga 3 18 90 112 [rn4:1:201456103-201456125:+] 0.5906 140 0 -13.87 -0.1401 MIMAT0003207 rno-miR-369-3p 245925 Phrf1 uuucuaguugguacAUAAUAa |||||| acuuuuuauauguaUAUUAUa 2 8 120 140 [rn4:1:201456133-201456153:+] 0.5906 120 6 -5.96 -0.2121 MIMAT0012826 rno-miR-220 245925 Phrf1 ucCAGAGACUGUGACACCAcc ||:|| ||:|||||| cuGUUUC---CAUUGUGGUcu 3 20 147 164 [rn4:1:201456160-201456177:+] 0.5906 135 0 -16.26 -0.1754 MIMAT0000560 rno-miR-326 245925 Phrf1 ugAC-CUCCUUCCC--GGGUC-UCc || |:|||:| | ||||| || ugUGUGGGGAGGCGUCCCCAGUAGg 2 20 11 35 [rn4:1:201456024-201456048:+] 0.4367 121 0 -26.56 -0.6700 MIMAT0004650 rno-miR-340-5p 245925 Phrf1 uuagucagaguaacGAAAUAUu :|||||| uugaaaacuggacuUUUUAUAu 2 9 109 130 [rn4:1:201456122-201456143:+] 0.5906 124 6 -4.22 -0.1083 MIMAT0000834 rno-miR-128 245925 Phrf1 uuucuCUGGCCAAGUGACACu |:|: | ||||||| -----GGCUAG-CCACUGUGu 2 17 1 15 [rn4:1:201456014-201456028:+] 0.4367 142 7 -14.21 -0.1625 MIMAT0000838 rno-miR-132 245925 Phrf1 gcUGGUACCGACAUCUGACAAu |::|| | || |||||| auAUUAUAG--AUACACUGUUu 2 21 133 152 [rn4:1:201456146-201456165:+] 0.5906 121 6 -7.22 -0.1206 MIMAT0000851 rno-miR-145 245925 Phrf1 ucccuaaggaccCUUUUGACCUg |||||||||| uugcuuacaauuGAAAACUGGAc 2 12 99 121 [rn4:1:201456112-201456134:+] 0.5906 155 7 -19.12 -1.1227 MIMAT0000854 rno-miR-152 245925 Phrf1 gguucaaGACAGUACGU-GACu ||||| |||| ||| augauacCUGUC-UGCACCUGu 2 15 77 97 [rn4:1:201456090-201456110:+] 0.5619 120 0 -16.45 -0.6709 MIMAT0000872 rno-miR-199a-5p 245925 Phrf1 cuUGUCCAUCAGA-CU-UGUGACcc |:: || | | || |||||| auAUGUAUAUUAUAGAUACACUGuu 3 22 127 151 [rn4:1:201456140-201456164:+] 0.5906 127 0 -8.92 -0.1117 MIMAT0000883 rno-miR-212 245925 Phrf1 accggcacugaccucUGACAAu |||||| guauauuauagauacACUGUUu 2 8 131 152 [rn4:1:201456144-201456165:+] 0.5906 120 6 -6.59 -0.1230 MIMAT0003117 rno-miR-361 245925 Phrf1 caUGGGGACCUCUA-AG-ACUAUu :||:||| :| | || ||||| cuGCCUCUGAGGUUCUCAUGAUAc 2 21 60 83 [rn4:1:201456073-201456096:+] 0.5332 127 0 -21.96 -0.3964 MIMAT0003193 rno-miR-494 245925 Phrf1 uccaaagggcacauACAAAGu |||||| uauuauagauacacUGUUUCc 2 8 134 154 [rn4:1:201456147-201456167:+] 0.5906 120 6 -5.43 -0.1330 MIMAT0003208 rno-miR-374 245925 Phrf1 guGAAUCGUCCAACAUAAUAUa :||| :| | | ||||||| uuUUUA-UAUG-UAUAUUAUAg 2 21 122 141 [rn4:1:201456135-201456154:+] 0.5906 148 7 -2.88 -1.1250 MIMAT0005311 rno-miR-410 245925 Phrf1 uguccgguagacacAAUAUAa |||||| gaaaacuggacuuuUUAUAUg 2 8 111 131 [rn4:1:201456124-201456144:+] 0.5906 120 6 -4.94 -0.1930

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G097812 Phrf1 Rattus norvegicus 245925

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Phrf1 RAID00851112 rno-miR-374-5p miRNA MIMAT0003208 Phrf1 mRNA 245925 Prediction 0.1828 Phrf1 RAID00929676 rno-miR-212-3p miRNA MIMAT0000883 Phrf1 mRNA 245925 Prediction 0.1828 Phrf1 RAID00976842 rno-miR-145-5p miRNA MIMAT0000851 Phrf1 mRNA 245925 Prediction 0.2202 Phrf1 RAID01120209 rno-miR-466b-2-3p miRNA MIMAT0017286 Phrf1 mRNA 245925 Prediction 0.1828 Phrf1 RAID01272149 rno-miR-466b-4-3p miRNA MIMAT0037262 Phrf1 mRNA 245925 Prediction 0.1828 Phrf1 RAID01290132 rno-miR-410-3p miRNA MIMAT0005311 Phrf1 mRNA 245925 Prediction 0.1828 Phrf1 RAID01436962 rno-miR-152-3p miRNA MIMAT0000854 Phrf1 mRNA 245925 Prediction 0.1828 Phrf1 RAID01475264 rno-miR-128-3p miRNA MIMAT0000834 Phrf1 mRNA 245925 Prediction 0.1828 Phrf1 RAID01908715 rno-miR-199a-5p miRNA MIMAT0000872 Phrf1 mRNA 245925 Prediction 0.1828 Phrf1 RAID02108426 rno-miR-326-3p miRNA MIMAT0000560 Phrf1 mRNA 245925 Prediction 0.1828 Phrf1 RAID02976238 rno-miR-494-3p miRNA MIMAT0003193 Phrf1 mRNA 245925 Prediction 0.1828 Phrf1 RAID03366608 rno-miR-340-5p miRNA MIMAT0004650 Phrf1 mRNA 245925 Prediction 0.1828 Phrf1 RAID03435918 rno-miR-361-5p miRNA MIMAT0003117 Phrf1 mRNA 245925 Prediction 0.1828 Phrf1 RAID03769678 rno-miR-132-3p miRNA MIMAT0000838 Phrf1 mRNA 245925 Prediction 0.1828