DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004639 rno-miR-325-3p 58974 Gabarap aaCUAUCCUCCACG-AGUUAUUu |:||||||| | ||||||| gaGGUAGGAGGCACAUCAAUAAa 2 21 379 401 [rn4:10:56840665-56840687:+] 0.6950 171 7 -24.85 -0.9021 MIMAT0000577 rno-miR-337 58974 Gabarap uuuccguaguauaucCUCGACUu ||||||| aaagaggaaaccaccGAGCUGAa 2 9 399 421 [rn4:10:56840685-56840707:+] 0.6950 140 7 -16.99 -0.8383 MIMAT0004646 rno-miR-338* 58974 Gabarap gugAGUCGUGGUCCUA-UAACAa ||| ||:| |||| ||||| cugUCA-CAUC-GGAUGAUUGUu 2 20 247 267 [rn4:10:56840533-56840553:+] 0.6950 127 0 -17.30 -0.9144 MIMAT0004648 rno-miR-339-3p 58974 Gabarap accgagacagcagCUCCGCGAGu | ||||||| ucuacaaagagagGUGGCGCUCc 2 11 30 52 [rn4:10:56840316-56840338:+] 0.6950 142 7 -14.98 -0.7792 MIMAT0004712 rno-miR-23a* 58974 Gabarap uuuaggguaggggucCUUGGGg |||||| ugcccacugggcucaGAACCCc 2 8 291 312 [rn4:10:56840577-56840598:+] 0.6950 120 6 -24.77 -0.1281 MIMAT0004717 rno-miR-29b-2* 58974 Gabarap gauUCGGUGGUAC-ACUUUGGUc | | |: | | ||||||| cacAUCAAUAAAGAGGAAACCAc 2 20 390 412 [rn4:10:56840676-56840698:+] 0.6950 142 7 -12.51 -0.2177 MIMAT0004724 rno-miR-99a* 58974 Gabarap gucugggUAUCUUUGCUCGAac | | | |||||| aaagaggAAACCACCGAGCUga 3 16 399 420 [rn4:10:56840685-56840706:+] 0.6950 123 0 -15.06 -0.1297 MIMAT0004725 rno-miR-99b* 58974 Gabarap gccugggugucuGU-GCUCGAac || |||||| uaaagaggaaacCACCGAGCUga 3 11 398 420 [rn4:10:56840684-56840706:+] 0.6950 121 0 -18.72 -0.1297 MIMAT0004731 rno-miR-125b* 58974 Gabarap uccagggUUCUCGGACUG-AACa |||:| :|||| ||| uagauggAAGGGGUUGACAUUGg 2 16 350 372 [rn4:10:56840636-56840658:+] 0.6950 123 0 -15.39 -0.5758 MIMAT0004743 rno-miR-300-5p 58974 Gabarap uguuuCCUAUUGG--AGAGA-AGUu |||| ::| ||||| ||| cuucuGGAUUGUCGAUCUCUGUCAc 2 18 229 253 [rn4:10:56840515-56840539:+] 0.6950 120 0 -11.68 -1.0057 MIMAT0003206 rno-miR-369-5p 58974 Gabarap cgCUUAUAUUGUGCCAGCUAGa || | : |: ||||||| uaGACUUCUGGAUUGUCGAUCu 2 21 225 246 [rn4:10:56840511-56840532:+] 0.6950 144 7 -13.54 -1.0714 MIMAT0005313 rno-miR-423 58974 Gabarap ugacUCCCCGGAGUCUGGCUCGa || || | ||||||| auaaAGAGGAAAC-CACCGAGCu 2 20 397 418 [rn4:10:56840683-56840704:+] 0.6950 141 7 -22.46 -0.4741 MIMAT0012847 rno-miR-293 58974 Gabarap guuucACAGUGUGU--CAAACUCa || ||| :| ||||||| ggaccUG-CACUUAAUGUUUGAGg 2 18 105 127 [rn4:10:56840391-56840413:+] 0.6950 146 7 -12.17 -0.6342 MIMAT0012856 rno-miR-759 58974 Gabarap caguuuuaacAAACGUGAGACg || ||||||| uuacccuccaUUCCCACUCUGc 2 13 201 222 [rn4:10:56840487-56840508:+] 0.6950 144 7 -14.06 -0.7814 MIMAT0000804 rno-miR-30c 58974 Gabarap cgacucucacauccuACAAAUGu ||||||| aucucucuuuccccuUGUUUACc 2 9 183 205 [rn4:10:56840469-56840491:+] 0.6950 140 7 -4.97 -0.7027 MIMAT0000805 rno-miR-30e 58974 Gabarap gaaggucaguuccuACAAAUGu ||||||| ucucucuuuccccuUGUUUACc 2 9 184 205 [rn4:10:56840470-56840491:+] 0.6950 140 7 -8.88 -0.7027 MIMAT0000806 rno-miR-30b-5p 58974 Gabarap ucgacucacauccuACAAAUGu ||||||| ucucucuuuccccuUGUUUACc 2 9 184 205 [rn4:10:56840470-56840491:+] 0.6950 140 7 -5.18 -0.7027 MIMAT0000807 rno-miR-30d 58974 Gabarap gaaggucagccccuACAAAUGu ||||||| ucucucuuuccccuUGUUUACc 2 9 184 205 [rn4:10:56840470-56840491:+] 0.6950 140 7 -8.83 -0.7027 MIMAT0000808 rno-miR-30a 58974 Gabarap gaaggucagcuccuACAAAUGu ||||||| ucucucuuuccccuUGUUUACc 2 9 184 205 [rn4:10:56840470-56840491:+] 0.6950 140 7 -8.83 -0.7027 MIMAT0000848 rno-miR-142-3p 58974 Gabarap agguauuucauccuuuGUGAUGu |||||| aauaaacccuuccuuuCACUACc 2 8 313 335 [rn4:10:56840599-56840621:+] 0.6950 120 6 -8.60 -0.1236 MIMAT0000849 rno-miR-143 58974 Gabarap acucgaugucacgaaGUAGAGu |||||| uucaggcucaaacacCAUCUCc 2 8 75 96 [rn4:10:56840361-56840382:+] 0.6950 120 6 -11.68 -0.1158 MIMAT0000852 rno-miR-146a 58974 Gabarap uuGGGUACCUUAAGUCAA-GAGu :|| ||| || ||||| ||| cuUCCUUGGCAUCCAGUUCCUCc 2 21 52 74 [rn4:10:56840338-56840360:+] 0.6950 136 0 -16.45 -0.7759 MIMAT0000862 rno-miR-185 58974 Gabarap aguccuugaCGGAAAGAGAGGu | || ||||||| aauguuugaGGCUGUCUCUCCa 2 14 117 138 [rn4:10:56840403-56840424:+] 0.6950 149 7 -18.14 -0.7311 MIMAT0000871 rno-miR-196a 58974 Gabarap ggguuguuguacuuUGAUGGAu ||||||| aaacccuuccuuucACUACCUu 2 9 316 337 [rn4:10:56840602-56840623:+] 0.6950 140 7 -14.17 -0.7569 MIMAT0000896 rno-miR-292-5p 58974 Gabarap guuuucuCGGGGGU--CAAACUCa || |::| ||||||| aggaccuGCACUUAAUGUUUGAGg 2 16 104 127 [rn4:10:56840390-56840413:+] 0.6950 146 7 -14.52 -0.6379 MIMAT0001082 rno-miR-196b 58974 Gabarap ggguuguuguccuuUGAUGGAu ||||||| aaacccuuccuuucACUACCUu 2 9 316 337 [rn4:10:56840602-56840623:+] 0.6950 140 7 -14.17 -0.7605 MIMAT0003179 rno-miR-542-3p 58974 Gabarap aaagucAAUAGUU--AGACAGUGu ||:||:| |||||||| ucuggaUUGUCGAUCUCUGUCACa 2 17 231 254 [rn4:10:56840517-56840540:+] 0.6950 159 7 -20.96 -1.2113 MIMAT0005303 rno-miR-196c 58974 Gabarap ggguuguugugcuuUGAUGGAu ||||||| aaacccuuccuuucACUACCUu 2 9 316 337 [rn4:10:56840602-56840623:+] 0.6950 140 7 -14.17 -0.7605 MIMAT0005309 rno-miR-384-5p 58974 Gabarap uguaacggauccuuAACAAAUGu |||||||| aucucucuuuccccUUGUUUACc 2 10 183 205 [rn4:10:56840469-56840491:+] 0.6950 145 7 -7.97 -0.7027 MIMAT0005316 rno-miR-455 58974 Gabarap gcuaCAUCAGGUUUCCGUGUAu | || : ::|||||||| ugggGGAGGUAGGAGGCACAUc 2 19 374 395 [rn4:10:56840660-56840681:+] 0.6950 154 7 -18.93 -0.8288 MIMAT0005341 rno-miR-488 58974 Gabarap cuGGUUCUUU--GUCGGAAAGUu |||| ||| | ||||||| ccCCAAUAAACCCUUCCUUUCAc 2 20 309 331 [rn4:10:56840595-56840617:+] 0.6950 158 7 -14.61 -1.1251 MIMAT0005341 rno-miR-488 58974 Gabarap cugguucuuugucGGAAAGuu |||||| uugguuucuauucCCUUUCua 3 9 268 288 [rn4:10:56840554-56840574:+] 0.6950 120 0 -7.18 -0.1110 MIMAT0005595 rno-miR-146b 58974 Gabarap ugucGGAUACCUUAAGUCAA-GAGu ||| ||| || ||||| ||| ccuuCCU-UGGCAUCCAGUUCCUCc 2 21 51 74 [rn4:10:56840337-56840360:+] 0.6950 134 0 -16.93 -0.7759

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G051932 Gabarap Rattus norvegicus 58974

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Gabarap rno-let-7i 78 97 UGUCGUGUUUGAUGAUGGAGU :|| ||||| || |:||| -AGGCUCAAAC-ACCAUCUCC Gabarap rno-miR-130b 93 117 UACGGGAAAGUAGUA----ACGUGAC :|||||| ||| |||||| --CUCCUUUCUUCAGGACCUGCACUU Gabarap rno-miR-134 50 71 -GGGAG--ACCAGUUGGUCAGUGU ||:|| ||| || |||||: UCCUUCCUUGG-CAUCCAGUUC-- Gabarap rno-miR-150 4 25 GUGACCAUGUUCCCAACCCUCU :||| |:: || ||||:| UGCUGUCCCGGAGG-UGGGGGU Gabarap rno-miR-17 106 133 UGAUGGACGUG----ACA---UUCGUGAAAC |||||||| ||| |:|| | --GACCUGCACUUAAUGUUUGAGGCUGUC-- Gabarap rno-miR-184 53 80 UGGGAAUA----GUCAA-GAGGCAGGU- :||||: ||||| |||| |:|| UUCCUUGGCAUCCAGUUCCUCC-UUCAG Gabarap rno-miR-185 104 140 -CUU-GACG-GAA--------------AGAGAGGU- |:| |||| ||| |||||||| AGGACCUGCACUUAAUGUUUGAGGCUGUCUCUCCAG Gabarap rno-miR-20a 106 133 GAUGGACGUGAUA-------UUCGUGAAAU ||||||||| |:|| | -GACCUGCACUUAAUGUUUGAGGCUGUC-- Gabarap rno-miR-20b 106 133 -UGGACGUGAU------ACU-CGUGAAAC ||||||||| ||| || | GACCUGCACUUAAUGUUUGAGGCUGUC-- Gabarap rno-miR-28 33 56 GAGUUA-UCUGACACU-CGAGGAA- ||| ||| |||: ||||||| -ACAAAGAGAG-GUGGCGCUCCUUC Gabarap rno-miR-292-3p 26 52 UGUGAGUUUUGGA-----CCGCCGUGAA ||:|| || ||:|||:|| CCAUUCU--ACAAAGAGAGGUGGCGCUC Gabarap rno-miR-296 13 28 UGUCCUAACUCC-CCCCCGGGA |||| |||||::| -------GGAGGUGGGGGUUCC Gabarap rno-miR-298 39 63 CCUUC-UUGUC-GGGAGGAGACGG ||:| ::|: ||:||||: || AGAGGUGGCGCUCCUUCCUUGGCA Gabarap rno-miR-300 35 65 CUUCUCUCGAA--CG-GGAA-----CGUAU ||||||| | || |||| |||| AAAGAGAGGUGGCGCUCCUUCCUUGGCAUC Gabarap rno-miR-326 12 45 UGACCUCC-UUCCCGGG------------UCUCC- ||||| ::|||::| ||||| --CGGAGGUGGGGGUUCCAUUCUACAAAGAGAGGU Gabarap rno-miR-343 5 24 AGACCCGUGUGCCUCC-CUCU- ||| | |||||| |:|: GCUGU---CCCGGAGGUGGGGG Gabarap rno-miR-346 36 68 -UCUC-CGUCCGUGAGU------CCGUCUGU- |||| | |||:||| |||| || AAGAGAGGUGGCGCUCCUUCCUUGGCAUCCAG Gabarap rno-miR-351 76 108 -GUCCGAGUUUCCC---GAGG-----AGUCCCU |||||||||| |||| ||||| UCAGGCUCAAACACCAUCUCCUUUCUUCAGGA- Gabarap rno-miR-412 11 50 UGCCGAUCACCU----GGU-------------CCACUUCA ||| :||||: ||| |||| | CCGGA-GGUGGGGGUUCCAUUCUACAAAGAGAGGUGGCGC Gabarap rno-miR-542-5p 11 42 -GCACUGUACUACUAGGGG---------CUC- || || :|| |:|:|| ||| CCG-GAGGUGGGGGUUCCAUUCUACAAAGAGA Gabarap rno-miR-93 106 133 GAUGGACGUGCUUG-------UCGUGAAAC |||||||| | :|| | -GACCUGCACUUAAUGUUUGAGGCUGUC-- Gabarap rno-let-7i 76 96 uGU-CGUGUUUGAUGAUGGAGu || || ||||| || |:||| tCAGGCTCAAAC-ACCATCTCc Gabarap rno-miR-130b 91 116 UACGGGAAAGUAGU----AACGUGAc || :|||||| ||| |||||| ATCTCCTTTCTTCAGGACCTGCACTt Gabarap rno-miR-134 51 72 GGGAG--ACCAGUUGGUCAGUGu ||:|| ||| || |||||: | CCTTCCTTGG-CATCCAGTTCCt Gabarap rno-miR-17 95 118 uGAUGGACGUGACAU--UCGUGAAac || :|| || | | |||||| cCTTTCTTCA--GGACCTGCACTTaa Gabarap rno-miR-185 121 138 cuugaCGGAAAGAGAGGU | || |||||||| tttgaGGCTGTCTCTCCA Gabarap rno-miR-191 1 31 UCGACGA-A--------AACCCUAAGGCAAc ||:|||| | | |||:|||| || AGTTGCTGTCCCGGAGGTGGGGGTTCCATTc Gabarap rno-miR-20a 96 118 GAUGGACGUGAUAUUCGUGAAau || :|| || | |||||| CTTTCTTCAGGACCTGCACTTaa Gabarap rno-miR-20b 98 118 ugGACGUGAUACUCGUGAAac || || | |||||| ttCTTCAGGACCTGCACTTaa Gabarap rno-miR-28 31 54 GA-GUUAUCU-GACA-CUCGAGGAA || ||| ||| || | ||||||| CTACAA-AGAGAGGTGGCGCTCCTT Gabarap rno-miR-292-3p 28 51 UGUGA-GUUUUGGACCGCCGUGAa |: || ||||: ||:|||:|| ATTCTACAAAGAGAGGTGGCGCTc Gabarap rno-miR-292-5p 101 127 guuUUCU---CGGGGGU--CAAACUCa |:|| || |::| ||||||| ttcAGGACCTGCACTTAATGTTTGAGg Gabarap rno-miR-296 6 27 uguccuaaCUCC-CCCCCGGGa |||| |||||::| ctgtcccgGAGGTGGGGGTTCc Gabarap rno-miR-298 42 62 CCUUCUUGUCGGGAGGAGACGg || :| :| ||:||||: || GGTGGCGC-TCCTTCCTTGGCa Gabarap rno-miR-326 1 17 ugaccuccuucCCGGGUCUCC | |||:|||| ----agttgctGTCCCGGAGG Gabarap rno-miR-343 5 24 aGACCCGUGUGCCUCCCUCu ||| | : || |||:| gCTGTCCCGGAGGTGGGGGt Gabarap rno-miR-346 39 66 UCUCCGUCCGUGAG------UCCGUCUGU |||||: |||:||| |||| || AGAGGT-GGCGCTCCTTCCTTGGCATCCA Gabarap rno-miR-351 77 108 GUCCGAGUUUCCCG--------AGGAGUCCcu |||||||||| | ||:||||| CAGGCTCAAACACCATCTCCTTTCTTCAGGac Gabarap rno-miR-351 57 82 guCCG-AGUUUCCCGA-GGAGUCCcu ||| || |: || |:||||| ttGGCATCCAGTTCCTCCTTCAGGct Gabarap rno-miR-376a 16 37 gCACCUAAAAGG--AGAUGCUa ||||: |||| ||||| | gGTGGGGGTTCCATTCTACAAa Gabarap rno-miR-412 1 23 ugcCGAUCACCUGG--UCCACUUCa |:|: || || |||||::| --aGTTGCTGTCCCGGAGGTGGGGg Gabarap rno-miR-542-5p 1 16 gcacuguACUACUAGGGGCUC || || |||| ||| ----agtTGCTG-TCCCGGAG Gabarap rno-miR-93 96 118 GAUGGACGUGCUUGUCGUGAAac || :|| || || | |||||| CTTTCTTCAGGACCTGCACTTaa Gabarap rno-miR-185 131 138 ----------CUUGACG-GAA--------------AGAGAGGU || |||| ||| |||||||| CUUUCUUCAGGACCUGCACUUAAUGUUUGAGGCUGUCUCUCCAG Gabarap rno-miR-292-5p 120 127 GUUU---------------UCUCGGGGGU------CAAACUCA || ||: || ||||||| AACACCAUCUCCUUUCUUCAGGACCUGCACUUAAUGUUUGAGG

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Gabarap RAID00028474 rno-miR-325-3p miRNA MIMAT0004639 Gabarap mRNA 58974 Prediction 0.2202 Gabarap RAID00090521 rno-miR-293-5p miRNA MIMAT0012847 Gabarap mRNA 58974 Prediction 0.1828 Gabarap RAID00309778 rno-miR-542-3p miRNA MIMAT0003179 Gabarap mRNA 58974 Prediction 0.2202 Gabarap RAID00337461 rno-miR-143-3p miRNA MIMAT0000849 Gabarap mRNA 58974 Prediction 0.1828 Gabarap RAID00376689 rno-miR-30b-5p miRNA MIMAT0000806 Gabarap mRNA 58974 Prediction 0.1828 Gabarap RAID00523772 rno-miR-409b miRNA MIMAT0017870 Gabarap mRNA 58974 Prediction 0.1828 Gabarap RAID00657567 rno-miR-146b-5p miRNA MIMAT0005595 Gabarap mRNA 58974 Prediction 0.1828 Gabarap RAID00780513 rno-miR-292-5p miRNA MIMAT0000896 Gabarap mRNA 58974 Prediction 0.2202 Gabarap RAID01048042 rno-miR-30c-5p miRNA MIMAT0000804 Gabarap mRNA 58974 Prediction 0.1828 Gabarap RAID01299792 rno-miR-196b-5p miRNA MIMAT0001082 Gabarap mRNA 58974 Prediction 0.1828 Gabarap RAID01396174 rno-miR-142-3p miRNA MIMAT0000848 Gabarap mRNA 58974 Prediction 0.1828 Gabarap RAID01981414 rno-miR-365-5p miRNA MIMAT0017184 Gabarap mRNA 58974 Prediction 0.1828 Gabarap RAID01985500 rno-miR-290 miRNA MIMAT0000893 Gabarap mRNA 58974 Prediction 0.1828 Gabarap RAID02406718 rno-miR-196c-5p miRNA MIMAT0005303 Gabarap mRNA 58974 Prediction 0.1828 Gabarap RAID02541867 rno-miR-196a-5p miRNA MIMAT0000871 Gabarap mRNA 58974 Prediction 0.1828 Gabarap RAID02853566 rno-miR-146a-5p miRNA MIMAT0000852 Gabarap mRNA 58974 Prediction 0.1828 Gabarap RAID02893627 rno-miR-30d-5p miRNA MIMAT0000807 Gabarap mRNA 58974 Prediction 0.1828 Gabarap RAID02910265 rno-miR-384-5p miRNA MIMAT0005309 Gabarap mRNA 58974 Prediction 0.1828 Gabarap RAID02932944 rno-miR-152-5p miRNA MIMAT0017134 Gabarap mRNA 58974 Prediction 0.1828 Gabarap RAID03237948 rno-miR-488-3p miRNA MIMAT0005341 Gabarap mRNA 58974 Prediction 0.2202 Gabarap RAID03311651 rno-miR-337-3p miRNA MIMAT0000577 Gabarap mRNA 58974 Prediction 0.1828 Gabarap RAID03486708 rno-miR-185-5p miRNA MIMAT0000862 Gabarap mRNA 58974 Prediction 0.1828 Gabarap RAID03524007 rno-miR-185-3p miRNA MIMAT0017142 Gabarap mRNA 58974 Prediction 0.1828 Gabarap RAID03563942 rno-miR-30e-5p miRNA MIMAT0000805 Gabarap mRNA 58974 Prediction 0.1828 Gabarap RAID03770701 rno-miR-30a-5p miRNA MIMAT0000808 Gabarap mRNA 58974 Prediction 0.1828 Gabarap RAID03822154 rno-miR-6329 miRNA MIMAT0025068 Gabarap mRNA 58974 Prediction 0.1828 Gabarap RAID03878737 rno-miR-455-5p miRNA MIMAT0005316 Gabarap mRNA 58974 Prediction 0.2202