DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Eed; Eed_predicted; rCG_40676 rno-miR-1 135 154 -AUGUGUGAAGAAAUGUAAGGU ||||: || |||||||: UUACAUUGUU---UACAUUCUU Eed; Eed_predicted; rCG_40676 rno-miR-101a 125 163 GAAGUCAAU---AGUGU---------------CAUGACAU :||| |:||| ||||||| --GUAGUGGUGUUUACAUUGUUUACAUUCUUUGUACUGUC Eed; Eed_predicted; rCG_40676 rno-miR-144 144 163 GAUCAUGUAGUAGAUAUGACAU |||||: |:|:|||||| ---UUACAUUCUUUGUACUGUC Eed; Eed_predicted; rCG_40676 rno-miR-145 224 247 UUCCCUAAGGAC--CCU---UUUGACCUG |: || ||| |||||||| ------AUUGUGAUGGAAACAAACUGGAA Eed; Eed_predicted; rCG_40676 rno-miR-181a 96 128 UGAGU----GGCUG--UCGCA---ACUUACAA :||| ||||: :|| ||||||| UUUCAGCAUCCGAUCAGGCUGAGCUGAAUGUA Eed; Eed_predicted; rCG_40676 rno-miR-181b 101 128 GGGU-GGCUG--UCGUU---ACUUACAA || ||||: :|| ||||||| -GCAUCCGAUCAGGCUGAGCUGAAUGUA Eed; Eed_predicted; rCG_40676 rno-miR-181c 96 128 UGAGU----GGCU-GUCCA-----ACUUACAA :||| |||| |||| ||||||| UUUCAGCAUCCGAUCAGGCUGAGCUGAAUGUA Eed; Eed_predicted; rCG_40676 rno-miR-204 55 77 UCCGUAUCCUAC---UGUUUCCCUU |:|| || :|||||||| -UGUAUCU--UGCUAGCAAAGGGAC Eed; Eed_predicted; rCG_40676 rno-miR-206 135 154 GGUGUGUGAAGGAAUGUAAGGU :|||: || |||||||: UUACAUUGUU---UACAUUCUU Eed; Eed_predicted; rCG_40676 rno-miR-211 66 77 UCCGUUUCCUACUGUUUCCCUU :|||||||| -----------AGCAAAGGGAC Eed; Eed_predicted; rCG_40676 rno-miR-214 153 172 GACG-GACAGACACGGACGACA ||: |||||| |||||| UUGUACUGUCUU--CCUGCUC- Eed; Eed_predicted; rCG_40676 rno-miR-217 102 132 -UAGGUCAGUCAAG---GACU-ACGUCAU- ||||: |||| |||| ||:|||: CAUCCGAUCAGGCUGAGCUGAAUGUAGUGG Eed; Eed_predicted; rCG_40676 rno-miR-221 110 131 CUUUGGGUCGUCUGUUACAUCGA |::|: ||| || ||||||: CAGGCUGAGCUGA--AUGUAGUG Eed; Eed_predicted; rCG_40676 rno-miR-222 106 131 CUCUGGGUCA---UCGGUCUACAUCGA || :||| |||: ||||||: -CGA-UCAGGCUGAGCUGAAUGUAGUG Eed; Eed_predicted; rCG_40676 rno-miR-24 103 124 GACAAGGA-----CGACUUGACUCGGU ||| |||||:|||| ---AUCCGAUCAGGCUGAGCUGAA--- Eed; Eed_predicted; rCG_40676 rno-miR-291-3p 62 88 CCGUGUGUUUCACCU----UCGUGAAA || :||||| ||| ||||:|| UGCUAGCAAAG-GGACUAGAGCAUUUA Eed; Eed_predicted; rCG_40676 rno-miR-29a 104 137 UUGGCUAAAGUCU---------------ACCACGAU |||| ||||: |||||:| -UCCGA--UCAGGCUGAGCUGAAUGUAGUGGUGUUU Eed; Eed_predicted; rCG_40676 rno-miR-29b 117 137 UUGUGACUAAAGUUUACCACGAU :|||| |:|||||:| --AGCUGAAUGU-AGUGGUGUUU Eed; Eed_predicted; rCG_40676 rno-miR-29c 117 137 -UGGCUAAAGUUUACCACGAU :|:|| |:|||||:| AGCUGAAUGU-AGUGGUGUUU Eed; Eed_predicted; rCG_40676 rno-miR-301 130 162 -UACGAAACUGUU----AUGAU---AACGUGAC- :||:|| ||| ||| |||:|||| GGUGUUU--ACAUUGUUUACAUUCUUUGUACUGU Eed; Eed_predicted; rCG_40676 rno-miR-30a-5p 108 141 GAAGGUCAG-CUC-----------CUACAAAUGU- :||| ||| |:|||||||| --AUCAGGCUGAGCUGAAUGUAGUGGUGUUUACAU Eed; Eed_predicted; rCG_40676 rno-miR-30b 116 141 -UCGACUCACAUC-CUACAAAUGU- |||||| ||||| |:|||||||| GAGCUGAAUGUAGUGGUGUUUACAU Eed; Eed_predicted; rCG_40676 rno-miR-30c 112 141 -CGACUCUC---ACAUC-CUACAAAUGU- |||||| ||||| |:|||||||| GGCUGAGCUGAAUGUAGUGGUGUUUACAU Eed; Eed_predicted; rCG_40676 rno-miR-30d 103 141 GAAGGUCAG-CC--------------C-CUACAAAUGU- |||: || || | |:|||||||| -AUCCGAUCAGGCUGAGCUGAAUGUAGUGGUGUUUACAU Eed; Eed_predicted; rCG_40676 rno-miR-30e 103 141 -AGGUCAGU---------------UC-CUACAAAUGU- |||: ||| || |:|||||||| AUCCGAUCAGGCUGAGCUGAAUGUAGUGGUGUUUACAU Eed; Eed_predicted; rCG_40676 rno-miR-320 158 180 AAGCGGGAGAGUUGGGUC-GAAAA :|:|:|| | :|:||| |||| -CUGUCUUC-CUGCUCAGACUUUA Eed; Eed_predicted; rCG_40676 rno-miR-337 100 125 UUUCCGUAGUAUA-UCC---UCGACUU- ||||| || ||| ||||||| ---AGCAUCCGAUCAGGCUGAGCUGAAU Eed; Eed_predicted; rCG_40676 rno-miR-346 77 119 -UCUCC---GUC------------CGUG----AGUCCGUCUGU |||| :|| |||: |||||| || UAGAGCAUUUAGACUUGUCUUUCAGCAUCCGAUCAGGCUGAG- Eed; Eed_predicted; rCG_40676 rno-miR-34a 161 186 UUGUUGGUCGAUUCUG---UGACGGU | || ||| |||| |||||: -UCUUCCUGCUCAGACUUUACUGCUU Eed; Eed_predicted; rCG_40676 rno-miR-34c 154 187 -CGU--UAGU----CGA--UUGAUGUGACGGA- |:| :|| ||| :||| :|||||:| UGUACUGUCUUCCUGCUCAGACUUUACUGCUUU Eed; Eed_predicted; rCG_40676 rno-miR-449 164 186 UGGUCGA--UUGUUAUGUGACGGU || ||| :|| :|||||: UCCUGCUCAGACUU--UACUGCUU Eed; Eed_predicted; rCG_40676 rno-miR-503 154 186 GUCAUGACA--AGGGCGA-----------CGAU ||||||| |||:||| ||| -UGUACUGUCUUCCUGCUCAGACUUUACUGCUU Eed; Eed_predicted; rCG_40676 rno-miR-7b 136 168 UUGUUUU-AGUGUU----------CAGAAGGU ||| |:||| ||||||| UACAUUGUUUACAUUCUUUGUACUGUCUUCCU Eed; Eed_predicted; rCG_40676 rno-miR-1 134 153 AUGUGUGAAGAAAUGUAAGgu | :||| || ||||||||| TTTACA-TTGTTTACATTCtt Eed; Eed_predicted; rCG_40676 rno-miR-144 141 162 gaucAUGUAGUAGAUAUGACAu |||||: |:|:|||||| tgttTACATTCTTTGTACTGTc Eed; Eed_predicted; rCG_40676 rno-miR-181a 99 127 ugaGU-GGCU-GU-CG---CAACUUACAa || |||| || || | ||||||| cagCATCCGATCAGGCTGAGCTGAATGTa Eed; Eed_predicted; rCG_40676 rno-miR-181b 105 127 GGGUGG-CUGUCGUUACUUACAa || |:| |:| | : ||||||| CCGATCAGGCTGAGCTGAATGTa Eed; Eed_predicted; rCG_40676 rno-miR-181c 99 127 ugaGU-GGCU-GUCC-A----ACUUACAa || |||| |||| | ||||||| cagCATCCGATCAGGCTGAGCTGAATGTa Eed; Eed_predicted; rCG_40676 rno-miR-206 133 153 ggugUGUGAAGGAAUGUAAGgu ||| || :|||||||| gtttACA-TTGTTTACATTCtt Eed; Eed_predicted; rCG_40676 rno-miR-214 153 172 gACG-GACAGACACGGACGAca ||: |||||| | |||||| tTGTACTGTCT-T-CCTGCTca Eed; Eed_predicted; rCG_40676 rno-miR-217 103 130 UAGGUCAGUCAAG---GAC-UACGUCAu ||||: |||| : ||| |||:||| ATCCGATCAGGCTGAGCTGAATGTAGTg Eed; Eed_predicted; rCG_40676 rno-miR-221 101 130 CUUUGGGUCGUCUG-------UUACAUCga | | || | |||:| ||||||| GCATCCGATCAGGCTGAGCTGAATGTAGtg Eed; Eed_predicted; rCG_40676 rno-miR-222 105 130 cuCUGGGUC-A-UCGGUCUACAUCga ||:| :| | |||:: |||||| ccGATCAGGCTGAGCTGAATGTAGtg Eed; Eed_predicted; rCG_40676 rno-miR-24 100 121 gacaAGGACGACU-UGACUCGgu ||| | | | :|||||| agcaTCC-GATCAGGCTGAGCtg Eed; Eed_predicted; rCG_40676 rno-miR-29a 117 136 UUGGCUAAAGUCUACCACGAu |:|:|| | :|| |||||:| AGCTGAATGTAG-TGGTGTTt Eed; Eed_predicted; rCG_40676 rno-miR-29b 115 136 uuguGACUAAAGUUUACCACGAu |||| | : |:|||||:| tgagCTGAATGT-AGTGGTGTTt Eed; Eed_predicted; rCG_40676 rno-miR-29c 118 136 uGGCUAAAGUUUACCACGAu |:|| | : |:|||||:| gCTGAATGT-AGTGGTGTTt Eed; Eed_predicted; rCG_40676 rno-miR-301 140 160 uACGAAACUGUUAUGAUAACGUGAC ||:|| || || || |||:|||| tTGTTT--AC-ATTCT-TTGTACTG Eed; Eed_predicted; rCG_40676 rno-miR-30a-5p 119 139 gaagguCAGCUCCUACAAAUGU || | || |||||||| ctgaatGTAGTGG-TGTTTACA Eed; Eed_predicted; rCG_40676 rno-miR-30b 117 139 UCGACUCACAUC-CUACAAAUGU |||||| ||||| |:|||||||| AGCTGAATGTAGTGGTGTTTACA Eed; Eed_predicted; rCG_40676 rno-miR-30c 113 139 CGACU---CUCACAUC-CUACAAAUGU ||||| || ||||| |:|||||||| GCTGAGCTGAATGTAGTGGTGTTTACA Eed; Eed_predicted; rCG_40676 rno-miR-30d 119 139 gaagguCAGCCCCUACAAAUGU || | || |||||||| ctgaatGTAGTGG-TGTTTACA Eed; Eed_predicted; rCG_40676 rno-miR-30e 121 139 agguCAGUUCCUACAAAUGU || |: |:|||||||| gaatGT-AGTGGTGTTTACA Eed; Eed_predicted; rCG_40676 rno-miR-320 160 187 aAGCGGGA-GAGU-UGG---GUCGAAAA || :||| |||| ||: | |||||| gTCTTCCTGCTCAGACTTTACTGCTTTT Eed; Eed_predicted; rCG_40676 rno-miR-337 97 123 uuucCGUAGUAUA-UC---CUCGACUU ||||| || || |||||||| ttcaGCATCCGATCAGGCTGAGCTGAA Eed; Eed_predicted; rCG_40676 rno-miR-346 97 119 ucucCGUCCGUGAGUCCGUCUgu ||| |: |||||| || ttcaGCATCCGATCAGGCTGAgc Eed; Eed_predicted; rCG_40676 rno-miR-34a 160 185 uuguuGGUCGAUUCU---GUGACGgu || ||| ||| :||||| gtcttCCTGCTCAGACTTTACTGCtt Eed; Eed_predicted; rCG_40676 rno-miR-34c 168 185 CGUUAGUCGAUUGAUGUGACGGA || |||| ||| :|||||:| GC--TCAG---ACTTTACTGCTT Eed; Eed_predicted; rCG_40676 rno-miR-503 153 171 guCAUGACAAGGGCGACGAu ||||||| ::| ||||| ttGTACTGTCTTC-CTGCTc Eed; Eed_predicted; rCG_40676 rno-miR-7 148 167 uuguuuuagUGAUCAGAAGGu ||| ||||||| attctttgtACT-GTCTTCCt Eed; Eed_predicted; rCG_40676 rno-miR-101a 155 162 GAA---GUCAAU---AGUGU---------------CAUGACAU :||| |:||| ||||||| UGAAUGUAGUGGUGUUUACAUUGUUUACAUUCUUUGUACUGUC Eed; Eed_predicted; rCG_40676 rno-miR-145 239 246 UUCCCUA--------------AGGAC--CCU---UUUGACCUG |: || ||| |||||||| UGUAAAGCUGUGUUAUUUUUAUUGUGAUGGAAACAAACUGGAA Eed; Eed_predicted; rCG_40676 rno-miR-181a 120 127 UGA--------------GU-GGCUG--UCG---CAACUUACAA || ||||: :|| | ||||||| UUAGACUUGUCUUUCAGCAUCCGAUCAGGCUGAGCUGAAUGUA Eed; Eed_predicted; rCG_40676 rno-miR-181b 120 127 --------------------GGGUGG-CUG--UCGUUACUUACAA || |:| |:| ||| ||||||| UUAGACUUGUCUUUCAGCAUCCGAUCAGGCUGAGC--UGAAUGUA Eed; Eed_predicted; rCG_40676 rno-miR-181c 120 127 UGA--------------GU-GGCU-GUCCA-----ACUUACAA || |||| |||| ||||||| UUAGACUUGUCUUUCAGCAUCCGAUCAGGCUGAGCUGAAUGUA Eed; Eed_predicted; rCG_40676 rno-miR-204 69 76 UC--------------------CGUAUCCUAC-UGUUUCCCUU |:|| :|||||||| GUCUGUGUAAAAUAGAAUUAAUGUAUCUUGCUAGCAAAGGGAC Eed; Eed_predicted; rCG_40676 rno-miR-211 69 76 UCCGUUUCCUAC---------------------UGUUUCCCUU :|||||||| GUCUGUGUAAAAUAGAAUUAAUGUAUCUUGCUAGCAAAGGGAC Eed; Eed_predicted; rCG_40676 rno-miR-30a-5p 132 139 GAA---------GGUCA-GCUC-----------CUACAAAUGU :||| :||| |:|||||||| UUCAGCAUCCGAUCAGGCUGAGCUGAAUGUAGUGGUGUUUACAU Eed; Eed_predicted; rCG_40676 rno-miR-30b 132 139 --------------------UCGACUCACAUC-CUACAAAUGU |||||| ||||| |:|||||||| UUCAGCAUCCGAUCAGGCUGAGCUGAAUGUAGUGGUGUUUACAU Eed; Eed_predicted; rCG_40676 rno-miR-30c 132 139 ----------------CGACUCUC---ACAUC-CUACAAAUGU |||||| ||||| |:|||||||| UUCAGCAUCCGAUCAGGCUGAGCUGAAUGUAGUGGUGUUUACAU Eed; Eed_predicted; rCG_40676 rno-miR-30d 132 139 GA-----AGGUCAGCCC----------------CUACAAAUGU |||: || || |:|||||||| UUCAGCAUCCGAUCAGGCUGAGCUGAAUGUAGUGGUGUUUACAU Eed; Eed_predicted; rCG_40676 rno-miR-30e 132 139 -------AGGUCAGUUC----------------CUACAAAUGU |||: |||:| |:|||||||| UUCAGCAUCCGAUCAGGCUGAGCUGAAUGUAGUGGUGUUUACAU Eed; Eed_predicted; rCG_40676 rno-miR-337 116 123 UUUC----------------CGUAGUAUA-UC---CUCGACUU ||||| || || |||||||| GCAUUUAGACUUGUCUUUCAGCAUCCGAUCAGGCUGAGCUGAAU Eed; Eed_predicted; rCG_40676 rno-miR-7 160 167 U--------------------UGUUUUA---GUGAUCAGAAGGU ||| :||| ||||||| GUAGUGGUGUUUACAUUGUUUACAUUCUUUGUACU-GUCUUCCU Eed; Eed_predicted; rCG_40676 rno-miR-7b 160 167 U-----------UGUUUU-AGUGUU----------CAGAAGGU ||| |:||| ||||||| GUAGUGGUGUUUACAUUGUUUACAUUCUUUGUACUGUCUUCCU

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Eed RAID00203358 rno-miR-7a-5p miRNA MIMAT0000606 Eed mRNA 293104 Prediction 0.1828 Eed RAID00662898 rno-miR-186-5p miRNA MIMAT0000863 Eed mRNA 293104 Prediction 0.1828 Eed RAID00808140 rno-miR-101b-3p miRNA MIMAT0000615 Eed mRNA 293104 Prediction 0.1828 Eed RAID00870650 rno-miR-30a-5p miRNA MIMAT0000808 Eed mRNA 293104 Prediction 0.2202 Eed RAID01114266 rno-miR-30b-5p miRNA MIMAT0000806 Eed mRNA 293104 Prediction 0.2202 Eed RAID01389368 rno-miR-30c-5p miRNA MIMAT0000804 Eed mRNA 293104 Prediction 0.2202 Eed RAID01520708 rno-miR-7b miRNA MIMAT0000780 Eed mRNA 293104 Prediction 0.1828 Eed RAID02157811 rno-miR-743b-3p miRNA MIMAT0005280 Eed mRNA 293104 Prediction 0.1828 Eed RAID02250026 rno-miR-101a-3p miRNA MIMAT0000823 Eed mRNA 293104 Prediction 0.1828 Eed RAID02659927 rno-miR-384-5p miRNA MIMAT0005309 Eed mRNA 293104 Prediction 0.2202 Eed RAID03576376 rno-miR-30d-5p miRNA MIMAT0000807 Eed mRNA 293104 Prediction 0.2202 Eed RAID03668974 rno-miR-337-3p miRNA MIMAT0000577 Eed mRNA 293104 Prediction 0.1828 Eed RAID03835512 rno-miR-30e-5p miRNA MIMAT0000805 Eed mRNA 293104 Prediction 0.2202