DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G116290 Cdc16 Rattus norvegicus 290875

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Cdc16 rno-let-7b 62 84 UUGGUGUGUUGGA-UGAUGGAGU || |:|::||| :|||| || -CCCUCGCGGCCUUGCUACAUCU Cdc16 rno-let-7d 102 128 -UGAUACGUUGGA-UGAUG--GAGA- :||:|| ||| ||||| |||| UGCUGUGACUCCUAACUACAGCUCUA Cdc16 rno-let-7e 56 76 UGAUAUGUUGGAG-GAUGGAGU :|:| |||| | :|||: --AGUGCUCCCUCGCGGCCUUG Cdc16 rno-let-7i 44 69 UGUCGUGUUUG---AUGAUGGAGU- |||||:| : |:|| ||||: CCAGCAUAGGUCAGUGCUCCCUCGC Cdc16 rno-miR-125a 1 32 -GUGUCC------AAUU-UC-CCAGAGUCCCU ||||| ||:| || |||| ||||| CCACAGCACACAAUUGACAGAGGUC-CAGGGC Cdc16 rno-miR-125b 8 32 AGUGUUCAA--UC-CCAGAGUCCCU ||||| || |||| ||||| ACACAAUUGACAGAGGUC-CAGGGC Cdc16 rno-miR-128a 84 111 UUUUCUCU---GGCCAAG--UGACACU- |||| || |||| :|||||| -UAAGAAUUUCCCAGUUCCUGCUGUGAC Cdc16 rno-miR-128b 84 111 CUUUCUCU---GGCCAAG--UGACACU- |||| || |||| :|||||| -UAAGAAUUUCCCAGUUCCUGCUGUGAC Cdc16 rno-miR-129 162 183 -UCGUUCGGGUCUGGCGUUUUUC ||||: ||| |:|||||:| CAGCAGACCCUGGCCGCAGAU-- Cdc16 rno-miR-132 166 187 GCUGGUACCGACAUCUGACAAU |||| |||| | ||| |||| AGACCCUGGCCGCAGA-UGUUC Cdc16 rno-miR-141 33 61 -GGUAGAA-AUGGUCU------GUCACAAU || || |:|||| ||||| ACCCUCGUGUGCCAGCAUAGGUCAGUGC-- Cdc16 rno-miR-146 166 190 -UUGGGUACCUUAAGU---CAAGAGU :|||| ||| || |||||| AGACCC-UGGCCG-CAGAUGUUCUCU Cdc16 rno-miR-151* 102 116 AUGAUCUGACACUCGAGGAGCU :|||||| ||||| -----UGCUGUGA-CUCCUA-- Cdc16 rno-miR-192 28 59 -CCG----------ACAGUUAAGUAUCCAGUC- ||| || || |||||||||| GGGCCACCCUCGUGUGCCAG--CAUAGGUCAGU Cdc16 rno-miR-200a 36 61 UGUAGCA-AUGGUCU------GUCACAAU |||| |:|||| ||||| --CUCGUGUGCCAGCAUAGGUCAGUGC-- Cdc16 rno-miR-205 140 163 -GUCUGAGGCCACCUUACUUCCU- ||| || || |||| :||| GCAGCCUGCGUUA-AAUGUGGGAC Cdc16 rno-miR-215 38 58 -CAGACAGUUUAGUAUCCAGUA || || || ||||||||| CGUGUGCCAG--CAUAGGUCAG Cdc16 rno-miR-221 197 224 CUUUGGG----UCGUC-UGUUACAUCGA :|:||: ||:|| || ||||||| UGAGCCUACAGAGUAGUAC-AUGUAGCA Cdc16 rno-miR-222 165 203 CUCUGGGUCAUCGG--UCUACA--------------UCGA |||||| |:||| |||||| ||| CAGACCC--UGGCCGCAGAUGUUCUCUGAUCUUCUGAGCC Cdc16 rno-miR-24 181 204 GACAAGGACGACUU---GACUCGGU |||||: |||| ||||||| AUGUUCU--CUGAUCUUCUGAGCCU Cdc16 rno-miR-296 2 34 -UGUC---------CUAACUCCCC--CCCGGGA |||| || |||| ||||| CACAGCACACAAUUGACAGAGGUCCAGGGCCA- Cdc16 rno-miR-298 19 47 CCUUCUUGUC-----GGGAGGAGACGG- ||:| ||| ||||| | |||| AGAGGUCCAGGGCCACCCUCGUGUGCCA Cdc16 rno-miR-299 148 172 UACA---UACACCCUGCCAUUUGGU || ||||||||| | |:||| -CGUUAAAUGUGGGACAGCAGACCC Cdc16 rno-miR-324-3p 136 176 -GGUCGUCG---------UGGACCC---CGUC----ACC- |||||||| |: |||| |||| ||| ACCAGCAGCCUGCGUUAAAUGUGGGACAGCAGACCCUGGC Cdc16 rno-miR-326 12 55 -UGAC---CUCCU--UCCCG------------GGUC---UCC |:|| |||| ||||| |||| ||| AAUUGACAGAGGUCCAGGGCCACCCUCGUGUGCCAGCAUAGGU Cdc16 rno-miR-327 32 55 -UGGGAGUACGGGGA-GU-UCC- ||||||:||: || || ||| CACCCUCGUGUGCCAGCAUAGGU Cdc16 rno-miR-331 20 34 AAGAUCCUAUCCGGGUCCCCG- |||:|||||| | --------GAGGUCCAGGGCCA Cdc16 rno-miR-341 170 195 UGACUGGCUG--GCU---GGCUAGCU |||:||| :| |:|||| CCUGGCCGCAGAUGUUCUCUGAUCU- Cdc16 rno-miR-345 142 168 -CGUGAC-CUG---AUCCCCAGUCGU- || ||| | |: ||| ||||| AGC-CUGCGUUAAAUGUGGGACAGCAG Cdc16 rno-miR-347 156 181 -ACCCG-----CUGGGUCUCCC-UGU- |||| ||||| || :|| GUGGGACAGCAGACCCU--GGCCGCAG Cdc16 rno-miR-34a 42 63 UUGUUGGUCG-AUUCUGUGACGGU :||||| ||:| || |||: ---UGCCAGCAUAGGUCAGUGCUC Cdc16 rno-miR-34c 46 75 -CGU---UAGUCGAUUGAU---GUGACGGA- ||| :||||: :|| |:| |||| AGCAUAGGUCAGU--GCUCCCUCGCGGCCUU Cdc16 rno-miR-361 168 194 CAUGGGGACC----UCUA----AGACUAUU |||||| |||| |||||| ---ACCCUGGCCGCAGAUGUUCUCUGAUC- Cdc16 rno-miR-363-5p 11 38 UUUAACG-----UAGCACUAGGUGGGC ||||| :|| | |||||| CAAUUGACAGAGGUCCAGGGCCACCCU Cdc16 rno-miR-370 24 56 UUGGUCCAAGGUGG--------GGUCGU--CCG- ||||| ||||| |||||| ||: -UCCAGGG-CCACCCUCGUGUGCCAGCAUAGGUC Cdc16 rno-miR-383 172 196 -UCGGUGUC-AGUGGAAGACUAGA- :|||:||| | :| |||||||| UGGCCGCAGAUGUUC-UCUGAUCUU Cdc16 rno-miR-422b 13 30 CGGAAGACUGAGGUUCAGGUCA :|||| |:|||||| ----AUUGACAG-AGGUCCAGG Cdc16 rno-miR-449 42 74 -UGGUCGAUU---GUUAUG------UGACGGU :||||| ||:|:| :| ||| UGCCAGCAUAGGUCAGUGCUCCCUCGCGGCCU Cdc16 rno-miR-485 19 40 -CUUAAGUAGUGCCGGUCGGAGA || || || ||||| |||| AGAGGUC--CAGGGCCACCCUCG Cdc16 rno-miR-493 170 198 -GACCGUGUGUCAU-------CUGGAAGU ||||| |:||| ||:|||| CCUGGC-CGCAGAUGUUCUCUGAUCUUCU Cdc16 rno-miR-540 157 178 GGUCCUAG---CUGGAGACUGGA :||| |||| |||:|| -UGGGACAGCAGACC-CUGGCCG Cdc16 rno-miR-541 38 67 ACAC-UGGUUGU----AGUCUU-AGGGAA ||| :|||:|| |||| ||||| CGUGUGCCAGCAUAGGUCAGUGCUCCCUC Cdc16 rno-miR-542-5p 171 193 GCACUGUA--CUACUAGGGGCUC ||:| |||| ||:|:|| -CUGGCCGCAGAUGUUCUCUGAU Cdc16 rno-miR-96 45 74 -UCGUUUUUA--CACGAUCA-----CGGUUU |||| |::| ||||| ||| CAGCAUAGGUCAGUGCUCCCUCGCGGCCU-- Cdc16 rno-let-7b 61 83 uuGGUGUGUUGG-AUGAUGGAGu || |:|::|| |:|||| || tcCCTCGCGGCCTTGCTACATCt Cdc16 rno-let-7d 103 126 uGAUACGUUGGA-UGAUG--GAGA ||:|| ||| ||||| |||| gCTGTGACTCCTAACTACAGCTCT Cdc16 rno-let-7e 62 83 ugauauGUUGGAG-GAUGGAGu |::|||: |||| || ccctcgCGGCCTTGCTACATCt Cdc16 rno-miR-125a 9 31 GUGUCCAAUUUC-CCAGAGUCCCu |||| | | || |||| ||||| CACAATTGACAGAGGTC-CAGGGc Cdc16 rno-miR-128a 86 109 uuuucucuGGCCAA--GUGACACU || ||| ::|||||| agaatttcCCAGTTCCTGCTGTGA Cdc16 rno-miR-128b 86 109 cuuucucuGGCCAA--GUGACACU || ||| ::|||||| agaatttcCCAGTTCCTGCTGTGA Cdc16 rno-miR-129 163 184 UCGUUCGGGUCUGGCGUUUuuc ||||: ||| |:|||||:| AGCAGACCCTGGCCGCAGAtgt Cdc16 rno-miR-141 34 62 GGUAG-AAAUGGUC---U---GUCACAAu || || | |:|||| | ||||| | CCCTCGTGTGCCAGCATAGGTCAGTGCTc Cdc16 rno-miR-146 167 189 uUGGGUACC----UUAAGUCAAGAGu |||| ||| |: | |||||| gACCC-TGGCCGCAGAT--GTTCTCt Cdc16 rno-miR-151* 99 117 AUGAUCUGACACUCGAGGAgcu | || :|||||| ||||| TCCT--GCTGTGA-CTCCTaac Cdc16 rno-miR-192 39 57 ccgACAGUUAAGUAUCCAGUC || ||: |||||||||| gtgTGCCAG--CATAGGTCAG Cdc16 rno-miR-200a 34 62 uGUAGCA-AUGGUC---U---GUCACAAu | |||| |:|||| | ||||| | cCCTCGTGTGCCAGCATAGGTCAGTGCTc Cdc16 rno-miR-205 141 161 GUCUGAGGCCACCUUACUUCCU ||| || | || |||| :||| CAGCCTGC-GTTAAATGTGGGA Cdc16 rno-miR-214 90 107 gACGGACAGACACGGACGACA | || | || |||||||| tTTCC---CAGTTCCTGCTGT Cdc16 rno-miR-215 39 57 CAGACAGUUUAGUAUCCAGUa || || ||: ||||||||| GTGTGCCAG--CATAGGTCAg Cdc16 rno-miR-221 201 223 cuuUGGGUCGUC-UGUUACAUCGa || ||:|| || ||||||| cctACAGAGTAGTAC-ATGTAGCa Cdc16 rno-miR-222 198 223 CUC---UGGGUCAUCGGUCUACAUCGa ||| || ||||| :| ||||||| GAGCCTACAGAGTAG-TACATGTAGCa Cdc16 rno-miR-24 181 203 gACAAG-GACGACUUGACUCGGu ||||| ||| | ||||||| aTGTTCTCTGATCTTCTGAGCCt Cdc16 rno-miR-296 8 34 UGUCCUAAC--UC-CC---CCCCGGga ||| |||| || || ||||| ACACAATTGACAGAGGTCCAGGGCCac Cdc16 rno-miR-299 150 171 uacaUACACCCUGCCAUUUGGu ||||||||| | |:||| ttaaATGTGGGACAGCAGACCc Cdc16 rno-miR-324-3p 161 184 gGUCGUCGUGGACC-CCGUC-ACc |||||| ||||| |||| || aCAGCAGACCCTGGCCGCAGATGt Cdc16 rno-miR-326 13 31 UGACCUCCUUCCCGGGUCUCc |:|| || ||:||||:| ATTGACAGA--GGTCCAGGGc Cdc16 rno-miR-327 50 70 ugggAGU-ACG-GGGAGUUCC ||| ||| |||||: || taggTCAGTGCTCCCTCGCGG Cdc16 rno-miR-331 12 32 aagauccUAUCCGGGUCCCcg | |||:|||||| aattgacAGAGGTCCAGGGcc Cdc16 rno-miR-341 170 195 uGACUGGCUGGCU------GGCUAGcu |||:||| | || |:|||| cCTGGCCG-CAGATGTTCTCTGATCtt Cdc16 rno-miR-345 140 166 CGU--GACCUGAU---C-CCCAGUCGU ||| ||| ::|| | ||| ||||| GCAGCCTGCGTTAAATGTGGGACAGCA Cdc16 rno-miR-347 144 163 accCGCUGGGU-CUCCCUGU ||| : | | |||||| cctGCGTTAAATGTGGGACA Cdc16 rno-miR-34a 39 62 uuguuGGUCG-AUUCUGUGACGgu ||||| ||:| || ||| gtgtgCCAGCATAGGTCAGTGCtc Cdc16 rno-miR-34c 47 73 CGU---UAGU--CGAUUGAUGUGACGGA ||| :||| ||| || |:| |||| GCATAGGTCAGTGCTCCCT-CGCGGCCT Cdc16 rno-miR-361 165 194 caugGGGACC----UCUA----AGACUAuu |||||| |||| |||||| cagaCCCTGGCCGCAGATGTTCTCTGATct Cdc16 rno-miR-370 23 54 uuGGUCCAAGGUGG--------GGUCG--UCCg ||||| ||||| ||||| ||| gtCCAGG-GCCACCCTCGTGTGCCAGCATAGGt Cdc16 rno-miR-383 173 194 uCGGUGUCAGUGGAAGACUAGA |||:||| :::: |||||||| gGCCGCAGATGTTCTCTGATCT Cdc16 rno-miR-422b 9 29 cggaagACUGAGGUUCAGGUCa |||| |:|||||| cacaatTGAC-AGAGGTCCAGg Cdc16 rno-miR-449 43 73 uGGUCG-AUU--GUUAU------GUGACGGu ||||| ||: ||:|: |:| ||| gCCAGCATAGGTCAGTGCTCCCTCGCGGCCt Cdc16 rno-miR-485 20 39 CUUAAGUAGUGCCGGUCGGAGa ||: || || ||||| |||| GAGGTC--CAGGGCCACCCTCg Cdc16 rno-miR-493 171 197 GACCGUGUGUC-AU------CUGGAAGu ||||| |:||| |: ||:|||| CTGGC-CGCAGATGTTCTCTGATCTTCt Cdc16 rno-miR-540 177 194 gGUCCUAGCUGGAGACUGGA || ||| | :||||||:|| gCA-GAT-GTTCTCTGATCT Cdc16 rno-miR-541 40 66 ACACUGGUUGU----AGUC-UUAGGGAa |||| |||:|| |||| : ||||| TGTG-CCAGCATAGGTCAGTGCTCCCTc Cdc16 rno-miR-542-5p 170 192 GCACUG--UACUACUAGGGGCUc | ||:| |||| ||:|:|| CCTGGCCGCAGATGTTCTCTGAt Cdc16 rno-miR-96 16 48 ucGUUUUUA---CACGAU-------CACGGUuu ||:|::| | || | |||||| gaCAGAGGTCCAGGGCCACCCTCGTGTGCCAgc Cdc16 rno-miR-192 50 57 --------------CCG--------ACAGUUAAGUAUCCAGUC ||| ||| |||||||||| UGACAGAGGUCCAGGGCCACCCUCGUGUGCCAGCAUAGGUCAGU Cdc16 rno-miR-214 100 107 GA---CGGACAGA-------------------CACGGACGACA |||| || || |||||||| UCGCGGCCUUGCUACAUCUUAAGAAUUUCCCAGUUCCUGCUGUG Cdc16 rno-miR-215 50 57 ------------------------CAGACAGUUUAGUAUCCAGUA || || || ||||||||| UGACAGAGGUCCAGGGCCACCCUCGUGUGCCAG--CAUAGGUCAG Cdc16 rno-miR-221 216 223 C----------------UUUGGG----UCGUC-UGUUACAUCGA :|:||: ||:|| || ||||||| AUGUUCUCUGAUCUUCUGAGCCUACAGAGUAGUAC-AUGUAGCA Cdc16 rno-miR-222 216 223 -----------------CUCUGGG----UCAUCGGUCUACAUCGA ||| ||: |||||: ||||||| AUGUUCUCUGAUCUUCUGAG-CCUACAGAGUAGUAC-AUGUAGCA Cdc16 rno-miR-24 196 203 G--------------------ACAAG-GACGACUUGACUCGGU ||||| ||| ||||||| ACAGCAGACCCUGGCCGCAGAUGUUCUCUGAUCUUCUGAGCCU Cdc16 rno-miR-383 187 194 ---------------------UCGGUGUCAGUGGAAGACUAGA :|||:||| ::: |||||||| AAAUGUGGGACAGCAGACCCUGGCCGCAGAUGUUCUCUGAUCUU

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Cdc16 RAID00344653 rno-miR-24-3p miRNA MIMAT0000794 Cdc16 mRNA 290875 Prediction 0.1828 Cdc16 RAID00892237 rno-miR-214-3p miRNA MIMAT0000885 Cdc16 mRNA 290875 Prediction 0.1828 Cdc16 RAID00917994 rno-miR-761 miRNA MIMAT0012853 Cdc16 mRNA 290875 Prediction 0.1828 Cdc16 RAID03859956 rno-miR-3543 miRNA MIMAT0017797 Cdc16 mRNA 290875 Prediction 0.1828