DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000554 rno-miR-324-3p 291000 Faf2 gguCGU-CGUGGACC--CCGUCACc ||: |::| || ||||||| uguGCGUGUGCAAGGCCGGCAGUGa 2 20 178 202 [rn4:17:16011883-16011907:-] 0.5898 145 7 -18.46 -0.1496 MIMAT0000561 rno-miR-327 291000 Faf2 ugggaGUACGG-GGA-GUUCc |||||: ||| |||| gaaacCAUGCUGCCUGCAAGa 2 15 146 166 [rn4:17:16011919-16011939:-] 0.5898 121 0 -16.45 -0.1194 MIMAT0000568 rno-miR-330* 291000 Faf2 agAGACGUCCGGGACACGAAACg |:||: |: | ||||||| acUUUGU-UUCUGUUUGCUUUGu 2 22 456 477 [rn4:17:16011608-16011629:-] 0.5898 147 7 -19.81 -1.1285 MIMAT0004713 rno-miR-25* 291000 Faf2 cguuaacGGGCACAGAGGCGGa ||| | ||||||| ccuccaaCCCAUCCCUCCGCCc 2 16 265 286 [rn4:17:16011799-16011820:-] 0.5898 151 7 -20.78 -0.2495 MIMAT0004714 rno-miR-26b* 291000 Faf2 cucgGUUCAUUACCUCUUGUcc ||| || ||||||| aaaaCAA-AAACAGAGAACAag 3 19 48 68 [rn4:17:16012017-16012037:-] 0.7018 132 0 -11.26 -0.2424 MIMAT0004717 rno-miR-29b-2* 291000 Faf2 gauucgguggUACACUUUGGUc || ||||||| cugcggaaggAUCGGAAACCAu 2 13 132 153 [rn4:17:16011932-16011953:-] 0.5898 144 7 -10.85 -0.1695 MIMAT0004732 rno-miR-135a* 291000 Faf2 aaaguaccgaaGGUAGGGAUgu | ||||||| ucuucccacccCAAUCCCUAaa 3 12 17 38 [rn4:17:16012047-16012068:-] 0.7660 127 0 -15.74 -0.2876 MIMAT0004739 rno-miR-204* 291000 Faf2 uugcagggaAACGGAAGG-GUCg | ||||||| ||| ccagcagacUCGCCUUCCACAGc 2 14 213 235 [rn4:17:16011850-16011872:-] 0.5898 121 0 -21.64 -0.1548 MIMAT0003121 rno-miR-483 291000 Faf2 uguucugcccuccccUCCUCACu ||||||| aaugauaaugaccaaAGGAGUGa 2 9 478 500 [rn4:17:16011585-16011607:-] 0.5898 140 7 -15.29 -0.9627 MIMAT0003177 rno-miR-541 291000 Faf2 ucacacugguuGUAGUCUUAGGGAa || | ||||||| cuccuucuuccCACCCCAAUCCCUa 2 15 12 36 [rn4:17:16012049-16012073:-] 0.7660 146 7 -12.48 -1.2948 MIMAT0003202 rno-miR-382* 291000 Faf2 uucACAACAGGCAC-UUACUAa |||| |: || |||||| uucUGUUUGCUUUGUAAUGAUa 2 19 463 484 [rn4:17:16011601-16011622:-] 0.5898 126 6 -9.56 -1.0607 MIMAT0003207 rno-miR-369-3p 291000 Faf2 uuUCUAGUU-GGUA-CAUAAUAa |||| || :||| |||||| agAGAUAAAUUCAUAUUAUUAUu 2 20 67 89 [rn4:17:16011996-16012018:-] 0.6376 133 6 -10.39 -0.4887 MIMAT0003207 rno-miR-369-3p 291000 Faf2 uuucuaguugguacAUAAUAa |||||| cauauuauuauuauUAUUAUa 2 8 78 98 [rn4:17:16011987-16012007:-] 0.6376 120 6 -4.87 -0.7390 MIMAT0005281 rno-miR-871 291000 Faf2 acACUGGC-CGUGGUUAG-ACUUAu ||||:| ||| : || ||||| acUGACUGCCCACAGUUCAUGAAUa 2 22 431 455 [rn4:17:16011630-16011654:-] 0.5898 128 0 -17.67 -0.8971 MIMAT0005289 rno-miR-881 291000 Faf2 agauaagucUUUAC-GGUGUCAa :| || ||||||| ggauggacuGACUGCCCACAGUu 2 14 425 447 [rn4:17:16011638-16011660:-] 0.5898 144 7 -13.90 -0.3804 MIMAT0005329 rno-miR-674-5p 291000 Faf2 auGUGGUGAGGGUA-GA-GUCACg |:|| || |||| || ||||| gcCGCCUCU-CCAUCCUCCAGUGa 2 21 234 256 [rn4:17:16011829-16011851:-] 0.5898 129 0 -23.71 -0.4080 MIMAT0000600 rno-miR-129 291000 Faf2 cguucgggucuggcGUUUUUc |||||| aagaaauggaaaaaCAAAAAc 2 8 38 58 [rn4:17:16012027-16012047:-] 0.7660 120 6 -4.52 -0.3149 MIMAT0000781 rno-miR-9 291000 Faf2 agUAUGUCGAUCUAUUGGUUUCu :|| | || ||:||||||| uuGUAAUGAUA-AUGACCAAAGg 2 22 474 495 [rn4:17:16011590-16011611:-] 0.5898 159 7 -13.98 -0.6171 MIMAT0000800 rno-miR-28 291000 Faf2 gaguuaucugacacUCGAGGAa ||||||| ucagcuccagcagcAGCUCCUg 2 9 362 383 [rn4:17:16011702-16011723:-] 0.5898 140 7 -13.86 -0.1302 MIMAT0000814 rno-miR-34c 291000 Faf2 cguuaGUCGAUUGAUGU-GACGGa ||| |:| |:|| ||||| gccggCAG-UGAAUGCACCUGCCc 2 19 192 214 [rn4:17:16011871-16011893:-] 0.5898 124 0 -17.97 -0.1022 MIMAT0000815 rno-miR-34a 291000 Faf2 uguugGUCGAUUCUGU-GACGGu |||: || :|| ||||| gccggCAGUGAAUGCACCUGCCc 2 18 192 214 [rn4:17:16011871-16011893:-] 0.5898 125 0 -19.88 -0.1022 MIMAT0000824 rno-miR-103 291000 Faf2 aguaucgggacauguuACGACGa |||||| uuuuuuuuaaaaaaacUGCUGCa 2 8 107 129 [rn4:17:16011956-16011978:-] 0.6137 120 6 -7.26 -0.2149 MIMAT0000826 rno-miR-107 291000 Faf2 acuaucgggacauguuACGACGa |||||| uuuuuuuuaaaaaaacUGCUGCa 2 8 107 129 [rn4:17:16011956-16011978:-] 0.6137 120 6 -7.26 -0.2149 MIMAT0000842 rno-miR-136 291000 Faf2 aggUAGUAGUUUUGUUUACCUca ||| :|||| ||||||| ccaAUCCCUAAAAGAAAUGGAaa 3 21 27 49 [rn4:17:16012036-16012058:-] 0.7660 152 0 -16.57 -0.4162 MIMAT0000851 rno-miR-145 291000 Faf2 ucccUAAGGACCCUUUUGACCUg || ||| |:|| |||| cccaAUCCCUAAAAGAAAUGGAa 2 20 26 48 [rn4:17:16012037-16012059:-] 0.7660 127 0 -9.10 -0.1143 MIMAT0000863 rno-miR-186 291000 Faf2 ucggguuuuccucuUAAGAAAc |||:||| uauuauaauacaauAUUUUUUu 2 9 92 113 [rn4:17:16011972-16011993:-] 0.6376 124 0 -2.95 -0.1034 MIMAT0000873 rno-miR-200c 291000 Faf2 ggUAGUAAUGGGCCGUCAUAAu ||:||||: || |||| uuAUUAUUAUAAUACAAUAUUu 2 21 88 109 [rn4:17:16011976-16011997:-] 0.6376 128 0 -8.19 -0.1822 MIMAT0000875 rno-miR-200b 291000 Faf2 caGUAGUAAUGGUCCGUCAUAAu :||:||||: | || |||| auUAUUAUUAUAAUACAAUAUUu 2 22 87 109 [rn4:17:16011976-16011998:-] 0.6376 137 0 -9.10 -0.1822 MIMAT0000885 rno-miR-214 291000 Faf2 gacggacagacacgGACGACa |||||| uuuuuuuaaaaaaaCUGCUGc 2 8 108 128 [rn4:17:16011957-16011977:-] 0.6137 120 6 -10.06 -0.1154 MIMAT0001538 rno-miR-429 291000 Faf2 ugccGUAAUGGUCUGUCAUAAu :||||: | ||| |||| uuauUAUUAUAAUACAAUAUUu 2 19 88 109 [rn4:17:16011976-16011997:-] 0.6376 134 0 -5.96 -0.1822 MIMAT0001543 rno-miR-449a 291000 Faf2 ugGUCGAUUGUUAUGU-GACGGu |:|| : |||:|| ||||| gcCGGCAGUGAAUGCACCUGCCc 2 21 192 214 [rn4:17:16011871-16011893:-] 0.5898 128 0 -22.78 -0.1043 MIMAT0003208 rno-miR-374 291000 Faf2 gugAAUCGUCCAACAUAAUAUa ||| :| | ||||||| auaUUAUUA-UUAUUAUUAUAa 2 20 79 99 [rn4:17:16011986-16012006:-] 0.6376 145 7 -1.95 -1.3449 MIMAT0003208 rno-miR-374 291000 Faf2 gugaaucguccaacAUAAUAua |||||| aagagauaaauucaUAUUAUua 3 9 66 87 [rn4:17:16011998-16012019:-] 0.6376 120 0 -1.96 -0.5776 MIMAT0005307 rno-miR-375 291000 Faf2 agugcgcucggcuugCUUGUUu |||||| aaaaacaaaaacagaGAACAAg 2 8 47 68 [rn4:17:16012017-16012038:-] 0.7018 120 6 -8.01 -0.2916 MIMAT0005331 rno-miR-708 291000 Faf2 ggGUCGAUCUAACAUUCGAGGAa ||||| | ||||||| auCAGCUCCAGCAGCAGCUCCUg 2 22 361 383 [rn4:17:16011702-16011724:-] 0.5898 149 7 -19.79 -0.1302

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G099579 Faf2 Rattus norvegicus 291000

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Faf2 RAID00154030 rno-miR-449a-5p miRNA MIMAT0001543 Faf2 mRNA 291000 Prediction 0.1828 Faf2 RAID00287929 rno-miR-375-3p miRNA MIMAT0005307 Faf2 mRNA 291000 Prediction 0.1828 Faf2 RAID00289638 rno-miR-107-3p miRNA MIMAT0000826 Faf2 mRNA 291000 Prediction 0.2202 Faf2 RAID00365301 rno-miR-145-5p miRNA MIMAT0000851 Faf2 mRNA 291000 Prediction 0.1828 Faf2 RAID00502571 rno-miR-374-5p miRNA MIMAT0003208 Faf2 mRNA 291000 Prediction 0.2202 Faf2 RAID00520602 rno-miR-3594-5p miRNA MIMAT0017898 Faf2 mRNA 291000 Prediction 0.1828 Faf2 RAID00556372 rno-miR-708-5p miRNA MIMAT0005331 Faf2 mRNA 291000 Prediction 0.1828 Faf2 RAID00587423 rno-miR-9a-5p miRNA MIMAT0000781 Faf2 mRNA 291000 Prediction 0.2381 Faf2 RAID00690029 rno-miR-129-5p miRNA MIMAT0000600 Faf2 mRNA 291000 Prediction 0.1828 Faf2 RAID01002105 rno-miR-330-3p miRNA MIMAT0000568 Faf2 mRNA 291000 Prediction 0.1828 Faf2 RAID01233681 rno-miR-186-5p miRNA MIMAT0000863 Faf2 mRNA 291000 Prediction 0.1828 Faf2 RAID01813266 rno-miR-194-3p miRNA MIMAT0017148 Faf2 mRNA 291000 Prediction 0.1828 Faf2 RAID01940957 rno-miR-103-3p miRNA MIMAT0000824 Faf2 mRNA 291000 Prediction 0.2202 Faf2 RAID02321792 rno-miR-214-3p miRNA MIMAT0000885 Faf2 mRNA 291000 Prediction 0.1828 Faf2 RAID02443394 rno-miR-136-5p miRNA MIMAT0000842 Faf2 mRNA 291000 Prediction 0.1828 Faf2 RAID02465143 rno-miR-34a-5p miRNA MIMAT0000815 Faf2 mRNA 291000 Prediction 0.1828 Faf2 RAID02663571 rno-miR-34c-5p miRNA MIMAT0000814 Faf2 mRNA 291000 Prediction 0.1828 Faf2 RAID02694024 rno-miR-429 miRNA MIMAT0001538 Faf2 mRNA 291000 Prediction 0.1828 Faf2 RAID02755512 rno-miR-200c-3p miRNA MIMAT0000873 Faf2 mRNA 291000 Prediction 0.1828 Faf2 RAID02865708 rno-miR-200b-3p miRNA MIMAT0000875 Faf2 mRNA 291000 Prediction 0.1828 Faf2 RAID03530933 rno-miR-185-3p miRNA MIMAT0017142 Faf2 mRNA 291000 Prediction 0.1828 Faf2 RAID03708732 rno-miR-133b-3p miRNA MIMAT0003126 Faf2 mRNA 291000 Prediction 0.1828 Faf2 RAID03726639 rno-miR-541-5p miRNA MIMAT0003177 Faf2 mRNA 291000 Prediction 0.1828 Faf2 RAID03757814 rno-miR-133a-3p miRNA MIMAT0000839 Faf2 mRNA 291000 Prediction 0.1828 Faf2 RAID03779784 rno-miR-28-5p miRNA MIMAT0000800 Faf2 mRNA 291000 Prediction 0.1828 Faf2 RAID03834618 rno-miR-3575 miRNA MIMAT0017861 Faf2 mRNA 291000 Prediction 0.1828 Faf2 RAID03873140 rno-miR-134-3p miRNA MIMAT0017125 Faf2 mRNA 291000 Prediction 0.1828