DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000598 rno-miR-347 308900 rnf141 acCCGCUGGGUCUCCCUGu || |: :||||||| gaGGAGGAGGGGAGGGACa 2 18 55 73 [rn4:1:168572471-168572489:-] 0.5481 145 7 -21.11 -0.3051 MIMAT0000606 rno-miR-7a 308900 rnf141 ugUUGUUUUAGUGAUCAGAAGGu ||:||| || | ||||||| uaAAUAAACUCCCAUGUCUUCCa 2 22 145 167 [rn4:1:168572377-168572399:-] 0.5481 169 7 -17.20 -1.1212 MIMAT0000780 rno-miR-7b 308900 rnf141 ugUUGUUUUAGUGUUCAGAAGGu ||:||| || || ||||||| uaAAUAAACUCCCAUGUCUUCCa 2 22 145 167 [rn4:1:168572377-168572399:-] 0.5481 177 7 -19.37 -1.1212 MIMAT0000863 rno-miR-186 308900 rnf141 ucggguuuuccucuUAAGAAac |||||| ugauaauaugucccAUUCUUaa 3 9 126 147 [rn4:1:168572397-168572418:-] 0.5481 120 0 -6.26 -0.1165 MIMAT0003114 rno-miR-383 308900 rnf141 ucGGUGUCAGUGG-AAGACUAga ::|: |::|: ||||||| ucUUAUUUUUGCUAUUCUGAUaa 3 21 109 131 [rn4:1:168572413-168572435:-] 0.5481 131 0 -9.26 -0.2077 MIMAT0003117 rno-miR-361 308900 rnf141 caugGGGACCUCUAAGACUAUu :::| | ||||||||| cuuaUUUUUGCUAUUCUGAUAa 2 19 110 131 [rn4:1:168572413-168572434:-] 0.5481 154 7 -16.80 -1.2664

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G100900 rnf141 Rattus norvegicus 308900

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 rnf141; Rnf141 rno-miR-128a 56 81 -UUUUCUCUGG-CCAAGUGACACU- ::|:|||: || || ||||: AGGAGGAGGGGAGGGACAGUGUGGC rnf141; Rnf141 rno-miR-128b 56 81 -CUUUCUCUGG-CCAAGUGACACU- |:|:|||: || || ||||: AGGAGGAGGGGAGGGACAGUGUGGC rnf141; Rnf141 rno-miR-133a 55 74 UGUCGACCAACUUC-CCCUGGUU || || | | ||||| -GAGGAGGA-GGGGAGGGACA-- rnf141; Rnf141 rno-miR-191 1 24 UCGACGAAAACCCU-----AAGGCAAC- ||| |||| |||:|||| -----CUUGGGGGAAGACUUUCUGUUGU rnf141; Rnf141 rno-miR-204 48 70 UCCGUAUCCUACUGUUUCCCUU- | ||||| || :|:||||: UGUCAUAGAG-GAGGAGGGGAGG rnf141; Rnf141 rno-miR-207 53 82 UUC-CCUCCUCUCGGUCCUCU----UCG- || |||||||:| :||| :|| UAGAGGAGGAGGGGAGGGACAGUGUGGCA rnf141; Rnf141 rno-miR-210 71 90 AGUCGGCGACAGUGUGCGUGUC- |||: || :||| ||||| ACAGU----GUGGCACACACAGA rnf141; Rnf141 rno-miR-211 52 73 UCCGUUUCCUAC-UGUUUCCCUU :|:|||| : ::||||| --AUAGAGGAGGAGGGGAGGGAC rnf141; Rnf141 rno-miR-221 57 82 -CUUUGGGUCG-UCUGUUACAUCGA ||:: :| :||||:|||:|| GGAGGAGGGGAGGGACAGUGUGGCA rnf141; Rnf141 rno-miR-324-3p 55 78 GGUCGUCGUGGAC-CCC-GUCACC || || | | ||| ||||| -GAGGAGGAGGGGAGGGACAGUGU rnf141; Rnf141 rno-miR-324-5p 40 80 -UGUGGUUACGGGA--------UCCCCU-------ACGC- ||||:: ||:| |||||| ||:| UACACUGUUGUCAUAGAGGAGGAGGGGAGGGACAGUGUGG rnf141; Rnf141 rno-miR-328 56 76 UGCCUUCCCGUCUCUCCCGGUC- |||:| :|:||||| ||| -AGGAGGA--GGGGAGGGACAGU rnf141; Rnf141 rno-miR-333 64 89 -UUUUCA---UUGAUCGUGUG-GUG ::|:| : |:|||||| || GGGAGGGACAGUGUGGCACACACAG rnf141; Rnf141 rno-miR-336 53 72 -UCUGAUCUAUACCUUCCCACU ||| ||: ||:|||| UAGAGGAGGAG-GGGAGGGA-- rnf141; Rnf141 rno-miR-339 54 73 ACUCGAGGACCUCCUGUCCCU- ||| |||||: ||||| AGAGGA---GGAGGGGAGGGAC rnf141; Rnf141 rno-miR-342 60 81 -CUGCCCACGCUAAAGACACACUCU || ||| | || | |||||: GGAGGGGAGGGA---CAGUGUGGC- rnf141; Rnf141 rno-miR-343 43 68 AGACCC--GUGUG-CCUCC-CUCU- ||| ||:| ||||| |:|: ACUGUUGUCAUAGAGGAGGAGGGGA rnf141; Rnf141 rno-miR-346 59 87 -UCUCCG--UCC-GUGAGUCCGUCUGU- :|||| :|| || | |||| ||| AGGAGGGGAGGGACAGUGUGGCACACAC rnf141; Rnf141 rno-miR-347 54 75 AC-CCGCUGGGUCUCCCUGU- | || |: :|||||||| AGAGGAGGAGGGGAGGGACAG rnf141; Rnf141 rno-miR-361 104 133 CAUGGGG--------ACCUCUAAGACUAUU- ||||: || |||||||||| -CACCCUCUUAUUUUUGCU-AUUCUGAUAAU rnf141; Rnf141 rno-miR-412 62 81 UGCCGAUCACCUGGUC-CACUUCA || || ||| ||| |||: -AGGGGAG-GGA-CAGUGUGGC-- rnf141; Rnf141 rno-miR-449 27 50 UGGUC-GAUUGUUAUGUGACGGU ||: ||| |||||||||:: UCCGAACUAUAAAUACACUGUUG rnf141; Rnf141 rno-miR-483 53 78 UGUUCUGC-CCUCCCCUCC---UCACU ||| | |||||||||| |||| --UAGAGGAGGAGGGGAGGGACAGUGU rnf141; Rnf141 rno-miR-7 146 169 -UUGUUUUAGUGAUCAGAAGGU- ||:||| || |||||||| AAAUAAACUCCCAUGUCUUCCAU rnf141; Rnf141 rno-miR-7b 146 169 -UUGUUUUAGUGUUCAGAAGGU- ||:||| || || |||||||| AAAUAAACUCCCAUGUCUUCCAU rnf141; Rnf141 rno-miR-128a 60 79 uuUUCUCUGGCCAAGUGACACu |:|:|| || || |||| ggAGGGGA--GGGACAGTGTGg rnf141; Rnf141 rno-miR-128b 60 79 CUUUCUCUGGCCAAGUGACACu |:|:|:|| || || |||| GGAGGGGA--GGGACAGTGTGg rnf141; Rnf141 rno-miR-133a 54 75 UGUCGACCAACUUCCCCUGguu | || || |:: ||||| AGAGGAGGAGGGGAGGGACagt rnf141; Rnf141 rno-miR-133b 55 75 aUCGACCAACUUCCCCUGguu || || |:: ||||| gAGGAGGAGGGGAGGGACagt rnf141; Rnf141 rno-miR-207 51 70 uuccCUCCUCUCGGUCCUCUUCg |||||| | |||:||:| cataGAGGAG-G--AGGGGAGGg rnf141; Rnf141 rno-miR-210 67 88 aguCGGCGACAGUGUGCGUGUC | | ||| :||| ||||| aggGACAGTGTGGCACACACAG rnf141; Rnf141 rno-miR-211 48 68 uCCGUUUCCUACUGUUUCCCUu | || | || || :|:|||| tGTCATA-GAGGAGGAGGGGAg rnf141; Rnf141 rno-miR-221 60 81 CUUUGGGUCGUCUGUUACAUCGa |:|: || :||||:|||:|| GGAGGGGAG-GGACAGTGTGGCa rnf141; Rnf141 rno-miR-324-3p 54 77 ggUCGUCGUGGAC-CCC-GUCACc || || | | ||| ||||| agAGGAGGAGGGGAGGGACAGTGt rnf141; Rnf141 rno-miR-324-5p 41 71 UGUGGUUACGGGA--------UCCCCUACgc ||||:: ||:| | |||||| | ACACTGTTGTCATAGAGGAGGAGGGGAGGga rnf141; Rnf141 rno-miR-328 52 74 UGCCUUC-CCGUCUCUCCCGGUC |: ||:| || :|:||||| ||| ATAGAGGAGGAGGGGAGGGACAG rnf141; Rnf141 rno-miR-333 70 88 uUUUCAUUGAUCGUGUG-GUg | |||: |:|||||| || gACAGTG--TGGCACACACAg rnf141; Rnf141 rno-miR-336 48 69 uCUG-AUCUAUACCUUCCCACu | | |||| : |||:||| | tGTCATAGAGGAGGAGGGGAGg rnf141; Rnf141 rno-miR-339 56 77 acucgaggaCCU-CCUGUCCCu ||| |||||| | aggaggaggGGAGGGACAGTGt rnf141; Rnf141 rno-miR-342 61 81 CUGCCCACGCUAAAGACACACucu || ||| | || | ||||| GAGGGGAGGGA---CAGTGTGgca rnf141; Rnf141 rno-miR-343 54 73 agacccgugugCCUCCCUcu ||||||| agaggaggaggGGAGGGAca rnf141; Rnf141 rno-miR-346 62 85 UCUCCGUCC-GUGAGUCCGUCUGU ||:|| :|| || | |||| ||| AGGGGAGGGACAGTGTGGCACACA rnf141; Rnf141 rno-miR-347 55 73 acCCGCUGGGUCUCCCUGU || |: :|||||||| gaGGAGGAGGGGAGGGACA rnf141; Rnf141 rno-miR-361 111 131 cAUGGGGACCUCUAAGACUAUU ||::::| | |||||||||| tTATTTTT-GCTATTCTGATAA rnf141; Rnf141 rno-miR-412 47 70 ugCCG-AUCACCUGGUCCACUUCa | | ||| ||| ||| ||:| ttGTCATAGAGGAGGAGGGGAGGg rnf141; Rnf141 rno-miR-483 50 77 uGU-UCUGC-CCUCCCCUCC---UCACu || ||| | |||||||||| |||| tCATAGAGGAGGAGGGGAGGGACAGTGt rnf141; Rnf141 rno-miR-7 147 167 UUGUUUUAGUGAUCAGAAGGU ||:||| || | |||||||| AATAAACTCCCATGTCTTCCA rnf141; Rnf141 rno-miR-7b 147 167 UUGUUUUAGUGUUCAGAAGGU ||:||| || || |||||||| AATAAACTCCCATGTCTTCCA rnf141; Rnf141 rno-miR-347 66 73 AC------------------------CCGCUGGGUCUCCCUGU || |: :|||||||| AACUAUAAAUACACUGUUGUCAUAGAGGAGGAGGGGAGGGACAG rnf141; Rnf141 rno-miR-361 124 131 CA--------------UGGGG--------ACCUCUAAGACUAUU ||||: || |||||||||| AAAUAUCAGUUUCCCCACCCUCUUAUUUUUGCU-AUUCUGAUAAU rnf141; Rnf141 rno-miR-7 160 167 ----------------------UUGUUUUAGUGAUCAGAAGGU ||:||| || |||||||| CUGAUAAUAUGUCCCAUUCUUAAAUAAACUCCCAUGUCUUCCAU rnf141; Rnf141 rno-miR-7b 160 167 ----------------------UUGUUUUAGUGUUCAGAAGGU ||:||| || || |||||||| CUGAUAAUAUGUCCCAUUCUUAAAUAAACUCCCAUGUCUUCCAU

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score rnf141 RAID00140173 rno-miR-92a-2-5p miRNA MIMAT0017108 rnf141 mRNA 308900 Prediction 0.1828 rnf141 RAID00382020 rno-miR-7b miRNA MIMAT0000780 rnf141 mRNA 308900 Prediction 0.1828 rnf141 RAID01202774 rno-miR-383-5p miRNA MIMAT0003114 rnf141 mRNA 308900 Prediction 0.1828 rnf141 RAID01785361 rno-miR-361-5p miRNA MIMAT0003117 rnf141 mRNA 308900 Prediction 0.2202 rnf141 RAID01885706 rno-miR-7a-5p miRNA MIMAT0000606 rnf141 mRNA 308900 Prediction 0.1828 rnf141 RAID03688098 rno-miR-186-5p miRNA MIMAT0000863 rnf141 mRNA 308900 Prediction 0.1828