DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT006532 rno-miR-199a-5p Rattus norvegicus Ube2i 25573 Rattus norvegicus Luciferase reporter assay Functional MTI 20965886

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000568 rno-miR-330* 25573 Ube2i agagacguccggGACACGAAAcg || |||||| uauugaguaaaaCU-UGCUUUua 3 12 169 190 [rn4:10:14510273-14510294:-] 0.7472 121 0 -7.38 -0.5945 MIMAT0004645 rno-miR-148b-5p 25573 Ube2i ggaCUCA-CAUAUUG-UCUUGAAg || | | |::| ||||||| aggGAUUGGCUUGGCAAGAACUUg 2 20 28 51 [rn4:10:14510412-14510435:-] 0.7472 145 7 -12.56 -0.9081 MIMAT0004646 rno-miR-338* 25573 Ube2i gugagucgugguccUAUAACaa |||||| uugcuuuuauuuuaAUAUUGau 3 9 182 203 [rn4:10:14510260-14510281:-] 0.7472 120 0 -6.06 -0.2052 MIMAT0000604 rno-miR-350 25573 Ube2i cacuuUCACAUACCCGAAACACUu ||| | | | ||| ||| uauucAGUCUUUUGUAUUUUUGAu 2 20 145 168 [rn4:10:14510295-14510318:-] 0.7472 123 0 -4.24 -0.1139 MIMAT0000614 rno-miR-151* 25573 Ube2i ggaGUUCCUCGGAGUCAGAuc | :| | :||||||| ccaCUGGCAUAUUCAGUCUuu 3 19 136 156 [rn4:10:14510307-14510327:-] 0.7472 130 0 -14.59 -0.1534 MIMAT0004705 rno-let-7b* 25573 Ube2i cccuuccGUCAUCCAACAUAuc |||| |||||| gcauauuCAGUCUUUUGUAUuu 3 16 142 163 [rn4:10:14510300-14510321:-] 0.7472 131 0 -8.83 -0.2140 MIMAT0004710 rno-miR-17-3p 25573 Ube2i gguguUCACGGAAGUGACGUCa ||| ::| ||||| | augucAGUAUUUCAACUGCUGu 2 18 202 223 [rn4:10:14510240-14510261:-] 0.7472 121 0 -14.83 -0.1534 MIMAT0004711 rno-miR-21* 25573 Ube2i cuGUCGGGUAGCUGACGACAac |||: : || |||||||| guCAGUAUUUCAACUGCUGUaa 3 21 204 225 [rn4:10:14510238-14510259:-] 0.7472 148 0 -18.72 -0.3966 MIMAT0004711 rno-miR-21* 25573 Ube2i cuguCGGGUAGCUGACGACAAc |:|::| ::||||||| uuuuGUCUGU--GUUGCUGUUu 2 19 471 490 [rn4:10:14509973-14509992:-] 0.7472 147 7 -12.40 -1.2118 MIMAT0003152 rno-miR-22* 25573 Ube2i auuUCGAACGGUG-ACU-UCUUGa |||| ||::: ||| ||||| uccAGCUGGCUGUAUGACAGAACc 2 20 322 345 [rn4:10:14510118-14510141:-] 0.7472 130 0 -15.48 -0.4692 MIMAT0004713 rno-miR-25* 25573 Ube2i cguUAACGGGCACAGAGGCGGa ||| :|| |:|||||| gccAUUUUCC--AUUUCCGCCa 2 20 119 138 [rn4:10:14510325-14510344:-] 0.7472 136 6 -17.85 -0.1541 MIMAT0004715 rno-miR-27a* 25573 Ube2i acGAGUGUUCGUCGAUUCGGGa :|:::| ::| ||||||| cuUUUGUACUUGG-UAAGCCCc 2 21 235 255 [rn4:10:14510208-14510228:-] 0.7472 146 7 -13.39 -0.6944 MIMAT0004732 rno-miR-135a* 25573 Ube2i aaaguaccGAAGGUAGGGAUGu ||||| ||||||| ugucccucCUUCCUUCCCUACc 2 15 350 371 [rn4:10:14510092-14510113:-] 0.7472 162 7 -19.86 -0.8689 MIMAT0004734 rno-miR-138* 25573 Ube2i gggaccacaacacuUCAUCGGc ||||||| uccguacaguuacuAGUAGCCu 2 9 80 101 [rn4:10:14510362-14510383:-] 0.7472 140 7 -13.18 -0.6732 MIMAT0004738 rno-miR-199a-3p 25573 Ube2i auUGGUUACACGUCUGAUGACa ::||:| | : |||:||| auGUCAGUAUUUCAACUGCUGu 2 21 202 223 [rn4:10:14510240-14510261:-] 0.7472 136 0 -14.33 -0.1157 MIMAT0000894 rno-miR-291a-5p 25573 Ube2i ucucucccGGAGGU-GAAACUAc ::| :| :|||||| uucagucuUUUGUAUUUUUGAUu 2 15 147 169 [rn4:10:14510294-14510316:-] 0.7472 125 6 -9.32 -0.4004 MIMAT0003113 rno-miR-489 25573 Ube2i cgacgguaUAUACACUACAGUaa |||| |||||||| uuauuuuaAUAU-UGAUGUCAgu 3 16 188 209 [rn4:10:14510254-14510275:-] 0.7472 141 0 -11.98 -0.2863 MIMAT0003116 rno-miR-501 25573 Ube2i aaAGUGGGUCCCUGUUUCCUAa ||| |:: | ||| ||| uuUCAACUGCUGUAAAAUGAUa 2 21 211 232 [rn4:10:14510231-14510252:-] 0.7472 120 0 -3.03 -0.1060 MIMAT0003202 rno-miR-382* 25573 Ube2i uucacaacaggcacUUACUAa |||||| uucaacugcuguaaAAUGAUa 2 8 212 232 [rn4:10:14510231-14510251:-] 0.7472 120 6 -7.94 -0.3742 MIMAT0003212 rno-miR-20b-3p 25573 Ube2i ggucuUCACGAGUGUGACGUCa ||| :|: ||||| | augucAGUAUUUCAACUGCUGu 2 18 202 223 [rn4:10:14510240-14510261:-] 0.7472 121 0 -15.75 -0.1519 MIMAT0003380 rno-miR-505 25573 Ube2i ccuuuggucguuCACAACug |||||| ggcguuuugucuGUGUUGcu 3 9 467 486 [rn4:10:14509977-14509996:-] 0.7472 120 0 -8.25 -0.1739 MIMAT0005287 rno-miR-879 25573 Ube2i ccgaaucucGAUAUUCGGAGa :|||:|||||| ggcuguugcUUAUGAGCCUCa 2 13 393 413 [rn4:10:14510050-14510070:-] 0.7472 140 6 -22.40 -0.1062 MIMAT0005301 rno-miR-188 25573 Ube2i ggGAGGUG--GUACGUUCCCUAc |||||: |: | ||||||| ggCUCCAUGACGAGGAAGGGAUu 2 20 12 34 [rn4:10:14510429-14510451:-] 0.7472 158 7 -21.94 -1.1910 MIMAT0005342 rno-miR-652 25573 Ube2i guguugggaucaCCGCGGUAa |||||||| gaggguugagcgGGCGCCAUu 2 10 104 124 [rn4:10:14510339-14510359:-] 0.7472 145 7 -19.78 -0.5618 MIMAT0012831 rno-miR-544 25573 Ube2i cucGAACGAUUUUU-----ACGUCUua ||||:| | || |||||| gaaCUUGUUUACAACCUUUUGCAGAuc 3 20 45 71 [rn4:10:14510392-14510418:-] 0.7472 130 0 -12.69 -0.1232 MIMAT0012831 rno-miR-544 25573 Ube2i cuCGAACGAUUUUUAC-GUCUUa ||| ||| : ||| ||||| caGCUGGCU--GUAUGACAGAAc 2 21 324 344 [rn4:10:14510119-14510139:-] 0.7472 121 0 -16.26 -0.5654 MIMAT0012833 rno-miR-582 25573 Ube2i ucauugaccaacuuGUUGACau |||||| ugaugucaguauuuCAACUGcu 3 9 200 221 [rn4:10:14510242-14510263:-] 0.7472 120 0 -7.74 -0.1959 MIMAT0012833 rno-miR-582 25573 Ube2i ucauugaccaacuugUUGACAu |||||| uguuuagaguaaauaAACUGUu 2 8 486 507 [rn4:10:14509956-14509977:-] 0.7472 120 6 -8.39 -0.4642 MIMAT0012838 rno-miR-653 25573 Ube2i gucaucucUUACAAAGUUGug |:| ||||||| uugaugucAGUAUUUCAACug 3 14 199 219 [rn4:10:14510244-14510264:-] 0.7472 133 0 -9.63 -0.2042 MIMAT0012846 rno-miR-201 25573 Ube2i uucuuguuacggAAUGACUCa |||:|||| uuguauuuuugaUUAUUGAGu 2 10 156 176 [rn4:10:14510287-14510307:-] 0.7472 129 0 -10.56 -0.1163 MIMAT0012848 rno-miR-294 25573 Ube2i ucuauccCGGAGGUAAAACUc ||:|::||||| | aaaacuuGCUUUUAUUUUAAu 2 15 177 197 [rn4:10:14510266-14510286:-] 0.7472 126 0 -7.71 -0.1418 MIMAT0012848 rno-miR-294 25573 Ube2i ucuaucccggagguAAAACUc |||||| ucagucuuuuguauUUUUGAu 2 8 148 168 [rn4:10:14510295-14510315:-] 0.7472 120 6 -7.11 -0.4111 MIMAT0012853 rno-miR-761 25573 Ube2i acACAGUC--AAAGUGGGACGACg |||||| ||||| |||||| gaUGUCAGUAUUUCA-ACUGCUGu 2 21 201 223 [rn4:10:14510240-14510262:-] 0.7472 141 6 -24.73 -0.3770 MIMAT0004650 rno-miR-340-5p 25573 Ube2i uuagucagaguaacgAAAUAUu |||||| agaguaaauaaacugUUUAUAu 2 8 491 512 [rn4:10:14509951-14509972:-] 0.7472 120 6 -2.82 -0.3356 MIMAT0000804 rno-miR-30c 25573 Ube2i cgacucucacauccuACAAAUGu ||||||| ggcuuggcaagaacuUGUUUACa 2 9 35 57 [rn4:10:14510406-14510428:-] 0.7472 140 7 -11.40 -1.0126 MIMAT0000804 rno-miR-30c 25573 Ube2i cgACUCUCA--CAUCCUACAAAUGu | ||||| || ||||||: guUUAGAGUAAAUAAACUGUUUAUa 2 22 487 511 [rn4:10:14509952-14509976:-] 0.7472 136 0 -12.00 -0.4781 MIMAT0000804 rno-miR-30c 25573 Ube2i cgACUCUCACAUCCUACAAAUgu || |||| | |||||| uuUGUCUGUGU-UGCUGUUUAga 3 22 472 493 [rn4:10:14509970-14509991:-] 0.7472 131 0 -10.91 -0.1431 MIMAT0000805 rno-miR-30e 25573 Ube2i gaaGGUCAGUUCCU--ACAAAUGu |: | |||| | ||||||| uggCUUGGCAAGAACUUGUUUACa 2 20 34 57 [rn4:10:14510406-14510429:-] 0.7472 154 7 -14.23 -1.0010 MIMAT0000805 rno-miR-30e 25573 Ube2i gaaggUCAGUUCCU--ACAAAUGu ||| || | ||||||: uuuagAGUAAAUAAACUGUUUAUa 2 18 488 511 [rn4:10:14509952-14509975:-] 0.7472 132 0 -8.34 -0.4714 MIMAT0000805 rno-miR-30e 25573 Ube2i gaaggucaguucCUACAAAUgu | |||||| uuugucuguguuGCUGUUUAga 3 11 472 493 [rn4:10:14509970-14509991:-] 0.7472 122 0 -6.37 -0.1488 MIMAT0000806 rno-miR-30b-5p 25573 Ube2i ucgacucacauccuACAAAUGu ||||||| gcuuggcaagaacuUGUUUACa 2 9 36 57 [rn4:10:14510406-14510427:-] 0.7472 140 7 -10.67 -1.0126 MIMAT0000806 rno-miR-30b-5p 25573 Ube2i ucGACUCACAU-CCUACAAAUgu :|| |||: | |||||| uuUUGUCUGUGUUGCUGUUUAga 3 21 471 493 [rn4:10:14509970-14509992:-] 0.7472 131 0 -10.24 -0.1431 MIMAT0000806 rno-miR-30b-5p 25573 Ube2i ucgaCUCA--CAUCCUACAAAUGu |||| || ||||||: uuuaGAGUAAAUAAACUGUUUAUa 2 19 488 511 [rn4:10:14509952-14509975:-] 0.7472 129 0 -9.78 -0.4781 MIMAT0000807 rno-miR-30d 25573 Ube2i gaaggucagccccuACAAAUGu ||||||| gcuuggcaagaacuUGUUUACa 2 9 36 57 [rn4:10:14510406-14510427:-] 0.7472 140 7 -10.39 -1.0097 MIMAT0000807 rno-miR-30d 25573 Ube2i gaAGGUCAG-CCC--CUACAAAUgu |:: ||| | | | |||||| cgUUUUGUCUGUGUUGCUGUUUAga 3 21 469 493 [rn4:10:14509970-14509994:-] 0.7472 126 0 -7.83 -0.1459 MIMAT0000807 rno-miR-30d 25573 Ube2i gaaggucagccccuACAAAUGu ||||||: uagaguaaauaaacUGUUUAUa 2 9 490 511 [rn4:10:14509952-14509973:-] 0.7472 124 0 -7.40 -0.4815 MIMAT0000808 rno-miR-30a 25573 Ube2i gaaGGUCAGCUCCU--ACAAAUGu |: | | || | ||||||| uggCUUGGCAAGAACUUGUUUACa 2 20 34 57 [rn4:10:14510406-14510429:-] 0.7472 146 7 -10.94 -1.0068 MIMAT0000808 rno-miR-30a 25573 Ube2i gaAGGUCAG-CUC--CUACAAAUgu |:: ||| | | | |||||| cgUUUUGUCUGUGUUGCUGUUUAga 3 21 469 493 [rn4:10:14509970-14509994:-] 0.7472 126 0 -7.89 -0.1459 MIMAT0000808 rno-miR-30a 25573 Ube2i gaaggucagcuccuACAAAUGu ||||||: uagaguaaauaaacUGUUUAUa 2 9 490 511 [rn4:10:14509952-14509973:-] 0.7472 124 0 -7.40 -0.4781 MIMAT0000838 rno-miR-132 25573 Ube2i gcugguaccgacaucUGACAAu |||||| guuuagaguaaauaaACUGUUu 2 8 487 508 [rn4:10:14509955-14509976:-] 0.7472 120 6 -5.89 -0.4904 MIMAT0000850 rno-miR-144 25573 Ube2i ucAUGUAGUAGAUAUGACAu || | :| || ||||| uuUAGAGUAAAUAAACUGUu 2 19 488 507 [rn4:10:14509956-14509975:-] 0.7472 122 0 -7.26 -0.1137 MIMAT0000868 rno-miR-193 25573 Ube2i ugacccugaaaCAUCCGGUCaa || |||||| ucagauccaaaGUUGGCCAGca 3 12 411 432 [rn4:10:14510031-14510052:-] 0.7472 127 0 -12.96 -0.1838 MIMAT0000873 rno-miR-200c 25573 Ube2i ggUAGUAAUGGGCCGUCAUAAu | :|||: :| ||||||| uuAAUAUUG-AUGUCAGUAUUu 2 21 193 213 [rn4:10:14510250-14510270:-] 0.7472 150 7 -12.97 -1.2079 MIMAT0000875 rno-miR-200b 25573 Ube2i caGUAGUAAUGGUCCGUCAUAAu :| :|||: : | ||||||| uuUAAUAUUGAU-GUCAGUAUUu 2 22 192 213 [rn4:10:14510250-14510271:-] 0.7472 151 7 -10.85 -1.2079 MIMAT0000876 rno-miR-203 25573 Ube2i gaucACCAGGAUUUGUAAAGUg | | : | |::|||||| aauaUUGAUGUCAGUAUUUCAa 2 19 195 216 [rn4:10:14510247-14510268:-] 0.7472 134 6 -8.22 -0.1717 MIMAT0000883 rno-miR-212 25573 Ube2i accggcacugaccucUGACAAu |||||| guuuagaguaaauaaACUGUUu 2 8 487 508 [rn4:10:14509955-14509976:-] 0.7472 120 6 -6.98 -0.4802 MIMAT0000885 rno-miR-214 25573 Ube2i gacggacagacacgGACGACa |||||| ugucaguauuucaaCUGCUGu 2 8 203 223 [rn4:10:14510240-14510260:-] 0.7472 120 6 -15.64 -0.4066 MIMAT0000903 rno-miR-320 25573 Ube2i agCGG-GAGAGU-UGGGUC-GAAAa ||| || || |::||| |||| ccGCCACUGGCAUAUUCAGUCUUUu 2 21 133 157 [rn4:10:14510306-14510330:-] 0.7472 122 0 -21.50 -1.0451 MIMAT0001538 rno-miR-429 25573 Ube2i ugccGUAAUGGUCUGUCAUAAu :|||: : | ||||||| uuaaUAUUGAU-GUCAGUAUUu 2 19 193 213 [rn4:10:14510250-14510270:-] 0.7472 148 7 -10.84 -1.2079 MIMAT0003199 rno-miR-381 25573 Ube2i cucucgaacGGGAACAUAu |::|||||| auauucaguCUUUUGUAUu 2 11 144 162 [rn4:10:14510301-14510319:-] 0.7472 130 6 -8.92 -0.2564 MIMAT0003203 rno-miR-485 25573 Ube2i cuuaaguagugccggUCGGAGa |||||| gggcuguugcuuaugAGCCUCa 2 8 392 413 [rn4:10:14510050-14510071:-] 0.7472 120 6 -12.11 -0.1072 MIMAT0005309 rno-miR-384-5p 25573 Ube2i uguAACGGAUCCUUAACAAAUGu ||| | || | |||||||| ggcUUGGCAAGAACUUGUUUACa 2 21 35 57 [rn4:10:14510406-14510428:-] 0.7472 168 7 -17.71 -1.0039 MIMAT0005309 rno-miR-384-5p 25573 Ube2i uguAACGGAU-CCUUAACAAAUgu |||:||: | : |||||| guuUUGUCUGUGUUGCUGUUUAga 3 21 470 493 [rn4:10:14509970-14509993:-] 0.7472 135 0 -11.48 -0.1473 MIMAT0005309 rno-miR-384-5p 25573 Ube2i uguaacggauccUUAACAAAUGu || ||||||: uuagaguaaauaAACUGUUUAUa 2 12 489 511 [rn4:10:14509952-14509974:-] 0.7472 131 0 -6.81 -0.4781 MIMAT0005311 rno-miR-410 25573 Ube2i uguccGGUAGACAC-AAUAUAa :| |:|||| |||||| ccacuUCCUUUGUGUUUAUAUg 2 17 446 467 [rn4:10:14509996-14510017:-] 0.7472 128 6 -12.53 -0.6835 MIMAT0005311 rno-miR-410 25573 Ube2i uguccgguagacacAAUAUAa |||||| aguaaauaaacuguUUAUAU- 2 8 493 512 [rn4:10:14509951-14509970:-] 0.7472 120 6 -6.94 -0.3328

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G036755 Ube2i Rattus norvegicus 25573

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Ube2i RAID00287533 rno-miR-30c-5p miRNA MIMAT0000804 Ube2i mRNA 25573 Prediction 0.2381 Ube2i RAID00298375 rno-miR-489-3p miRNA MIMAT0003113 Ube2i mRNA 25573 Prediction 0.1828 Ube2i RAID00369005 rno-miR-485-5p miRNA MIMAT0003203 Ube2i mRNA 25573 Prediction 0.1828 Ube2i RAID00430045 rno-miR-30b-5p miRNA MIMAT0000806 Ube2i mRNA 25573 Prediction 0.2381 Ube2i RAID00449111 rno-miR-3541 miRNA MIMAT0017795 Ube2i mRNA 25573 Prediction 0.1828 Ube2i RAID00479134 rno-miR-132-3p miRNA MIMAT0000838 Ube2i mRNA 25573 Prediction 0.1828 Ube2i RAID00540883 rno-miR-30a-5p miRNA MIMAT0000808 Ube2i mRNA 25573 Prediction 0.2381 Ube2i RAID00579254 rno-miR-873-3p miRNA MIMAT0017318 Ube2i mRNA 25573 Prediction 0.1828 Ube2i RAID00760938 rno-miR-21-3p miRNA MIMAT0004711 Ube2i mRNA 25573 Prediction 0.1828 Ube2i RAID00879720 rno-miR-1188-3p miRNA MIMAT0017855 Ube2i mRNA 25573 Prediction 0.1828 Ube2i RAID01116681 rno-miR-7a-2-3p miRNA MIMAT0017091 Ube2i mRNA 25573 Prediction 0.1828 Ube2i RAID01970358 rno-miR-410-3p miRNA MIMAT0005311 Ube2i mRNA 25573 Prediction 0.1828 Ube2i RAID02023468 rno-miR-122-3p miRNA MIMAT0017116 Ube2i mRNA 25573 Prediction 0.1828 Ube2i RAID02269987 rno-miR-193a-3p miRNA MIMAT0000868 Ube2i mRNA 25573 Prediction 0.1828 Ube2i RAID02368275 rno-miR-212-3p miRNA MIMAT0000883 Ube2i mRNA 25573 Prediction 0.1828 Ube2i RAID02679678 rno-miR-144-3p miRNA MIMAT0000850 Ube2i mRNA 25573 Prediction 0.1828 Ube2i RAID02862652 rno-miR-195-3p miRNA MIMAT0017149 Ube2i mRNA 25573 Prediction 0.1828 Ube2i RAID02924040 rno-miR-203a-3p miRNA MIMAT0000876 Ube2i mRNA 25573 Prediction 0.1828 Ube2i RAID02946845 rno-miR-199a-5p miRNA MIMAT0000872 Ube2i mRNA 25573 Reporter Assay 0.7311 Ube2i RAID03075701 rno-miR-214-3p miRNA MIMAT0000885 Ube2i mRNA 25573 Prediction 0.1828 Ube2i RAID03198011 rno-miR-3120 miRNA MIMAT0017900 Ube2i mRNA 25573 Prediction 0.1828 Ube2i RAID03334779 rno-miR-381-3p miRNA MIMAT0003199 Ube2i mRNA 25573 Prediction 0.1828 Ube2i RAID03348318 rno-miR-652-3p miRNA MIMAT0005342 Ube2i mRNA 25573 Prediction 0.1828 Ube2i RAID03379961 rno-miR-429 miRNA MIMAT0001538 Ube2i mRNA 25573 Prediction 0.2381 Ube2i RAID03449623 rno-miR-200c-3p miRNA MIMAT0000873 Ube2i mRNA 25573 Prediction 0.2381 Ube2i RAID03513257 rno-miR-384-5p miRNA MIMAT0005309 Ube2i mRNA 25573 Prediction 0.2381 Ube2i RAID03526268 rno-miR-320-3p miRNA MIMAT0000903 Ube2i mRNA 25573 Prediction 0.1828 Ube2i RAID03543034 rno-miR-30e-5p miRNA MIMAT0000805 Ube2i mRNA 25573 Prediction 0.2381 Ube2i RAID03557519 rno-miR-200b-3p miRNA MIMAT0000875 Ube2i mRNA 25573 Prediction 0.2381 Ube2i RAID03614384 rno-miR-3549 miRNA MIMAT0017807 Ube2i mRNA 25573 Prediction 0.1828 Ube2i RAID03652973 rno-miR-30d-5p miRNA MIMAT0000807 Ube2i mRNA 25573 Prediction 0.2381 Ube2i RAID03761943 rno-miR-340-5p miRNA MIMAT0004650 Ube2i mRNA 25573 Prediction 0.1828 Ube2i RAID03944072 rno-miR-188-5p miRNA MIMAT0005301 Ube2i mRNA 25573 Prediction 0.1828