DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004652 rno-miR-342-5p 313658 Ubr4 gaguuagugucuAUCGUGGGGa ||||||||| cggaugcugcauUAGCACCCCc 2 11 93 114 [rn4:5:158289777-158289798:+] 0.5327 150 7 -19.58 -0.5595 MIMAT0000902 rno-miR-300-3p 313658 Ubr4 cuuCUCUCGAACGGGAACGUAu || |||| | ||||||| auuGA-AGCUAG--CUUGCAUu 2 20 34 52 [rn4:5:158289718-158289736:+] 0.5028 150 7 -14.39 -0.2008 MIMAT0012847 rno-miR-293 313658 Ubr4 guUUCACAGUGUGUCAAAC-UCa :|||| | :: :||||| || ugGAGUGGCUUGGGGUUUGUAGg 2 21 132 154 [rn4:5:158289816-158289838:+] 0.6446 124 0 -13.71 -0.1825 MIMAT0000824 rno-miR-103 313658 Ubr4 agUAUCGGGACAUG-UUACGACGa || ||| || :||||||| ucAUUUCCC-CCACGGAUGCUGCa 2 22 81 103 [rn4:5:158289765-158289787:+] 0.5028 146 7 -20.17 -0.2768 MIMAT0000826 rno-miR-107 313658 Ubr4 acUAUCGGGACAUG-UUACGACGa || ||| || :||||||| ucAUUUCCC-CCACGGAUGCUGCa 2 22 81 103 [rn4:5:158289765-158289787:+] 0.5028 146 7 -16.89 -0.2768 MIMAT0000849 rno-miR-143 313658 Ubr4 acucGAUGUCACGAAGUAGAGu || | | |||||||| cauuCUCCCCUCAUUCAUCUCu 2 19 49 70 [rn4:5:158289733-158289754:+] 0.5028 150 7 -11.10 -0.5725 MIMAT0000862 rno-miR-185 313658 Ubr4 aguccuugacggaaAGAGAGGu ||||||| ucuccccucauucaUCUCUCCg 2 9 52 73 [rn4:5:158289736-158289757:+] 0.5028 140 7 -16.16 -0.5294 MIMAT0000866 rno-miR-191 313658 Ubr4 gucgaCGAAAACCCUAAGG-CAAc |:|| | || |||| ||| uugggGUUUGUAGGCUUCCUGUUc 2 19 141 164 [rn4:5:158289825-158289848:+] 0.6446 126 0 -12.31 -0.7564 MIMAT0005339 rno-miR-873 313658 Ubr4 ucCUCUGAGUGUUC-AAGGACg |:|::|:::|:| |||||| uuGGGGUUUGUAGGCUUCCUGu 2 20 141 162 [rn4:5:158289825-158289846:+] 0.6446 131 6 -21.27 -0.6909

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G058268 Ubr4 Rattus norvegicus 313658

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Ubr4 RAID00101325 rno-miR-185-5p miRNA MIMAT0000862 Ubr4 mRNA 313658 Prediction 0.1828 Ubr4 RAID01187766 rno-miR-103-3p miRNA MIMAT0000824 Ubr4 mRNA 313658 Prediction 0.2202 Ubr4 RAID01698346 rno-miR-143-3p miRNA MIMAT0000849 Ubr4 mRNA 313658 Prediction 0.1828 Ubr4 RAID02710841 rno-miR-873-5p miRNA MIMAT0005339 Ubr4 mRNA 313658 Prediction 0.1828 Ubr4 RAID03437349 rno-miR-191a-5p miRNA MIMAT0000866 Ubr4 mRNA 313658 Prediction 0.1828 Ubr4 RAID03609896 rno-miR-107-3p miRNA MIMAT0000826 Ubr4 mRNA 313658 Prediction 0.2202 Ubr4 RAID03969103 rno-miR-802-3p miRNA MIMAT0017362 Ubr4 mRNA 313658 Prediction 0.1828