DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000591 rno-miR-343 363253 Zfand2b agACCCGUGUGCCUCCCUCu ||||| :: |||||||| ucUGGGCUUGGGGAGGGAGg 2 19 3 22 [rn4:9:74454378-74454397:+] 0.5751 166 7 -34.53 -0.1192 MIMAT0004654 rno-miR-344-5p 363253 Zfand2b ggACCUUAGAU-CGGU-CCUCGGACu ||||: |: ||| |||||||| cgUGGAGGAUGUUCCAUGGAGCCUGg 2 23 113 138 [rn4:9:74454488-74454513:+] 0.5751 160 7 -30.80 -0.1445 MIMAT0005319 rno-miR-484 363253 Zfand2b uagcccuccccUGACUCGGACu |: ||||||| gaggauguuccAUGGAGCCUGg 2 12 117 138 [rn4:9:74454492-74454513:+] 0.5751 143 7 -17.87 -0.1488 MIMAT0012831 rno-miR-544 363253 Zfand2b cucgaacgauuuuUACGUCUUa :||||||| aggaaggaagcuuGUGCAGAAg 2 10 141 162 [rn4:9:74454516-74454537:+] 0.5428 141 7 -14.50 -0.1517 MIMAT0000583 rno-miR-339-5p 363253 Zfand2b gcaCUCGA-GG---ACCUC--CUGUCCCu |:||| || || || ||||||| ccgGGGCUGCCACAUGUAGCAGACAGGGa 2 21 258 286 [rn4:9:74454633-74454661:+] 0.5105 149 7 -27.21 -0.3443 MIMAT0000888 rno-miR-218 363253 Zfand2b ugUACCAAUCUAGUUCGUGUu | || ||: ||||||| acAGGGAAAGG--AAGCACAg 2 20 61 79 [rn4:9:74454436-74454454:+] 0.5751 144 7 -15.99 -0.1600 MIMAT0003203 rno-miR-485 363253 Zfand2b cuUAAGUAGUGCCGGUCGGAGa | ||| : | ||||||| agACUCAAUCCCCACAGCCUCu 2 21 212 233 [rn4:9:74454587-74454608:+] 0.5105 148 7 -17.32 -0.8285

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G101721 Zfand2b Rattus norvegicus 363253

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Zfand2b; Airapl rno-let-7a 224 252 UUGAUAUGUUGGA----------UGAUGGAGU- |||:||| |:|||| || -----CACAGCCUCUUACAUCGUAUUACCCCAC Zfand2b; Airapl rno-let-7b 221 252 UUGGUGUGUUGGA----------UGAUGGAGU- || ||||:||| |:|||| || -CCC-CACAGCCUCUUACAUCGUAUUACCCCAC Zfand2b; Airapl rno-let-7c 226 252 -UUGGU--AUGUUGGAUGAUGGAGU- |:|| |||| | ||:|||| || CAGCCUCUUACAUCGUAUUACCCCAC Zfand2b; Airapl rno-miR-10a 44 68 -GUGUUUAAG-CCUAGAUGUCCCAU |||| ||:| |||||| UCACAUCUCCAGGGUACACAGGGA- Zfand2b; Airapl rno-miR-122a 28 56 UGUUUGUGGUAAC---AGUGU-GAGGU- |||: ||::| ||||| ||||| CCAAGGACUGUGGCCCUCACAUCUCCAG Zfand2b; Airapl rno-miR-125b 43 69 -AGUGUUCAA-UCCCAGA-GUCCCU- ||||| ||||| |||||| CUCACAUCUCCAGGGUACACAGGGAA Zfand2b; Airapl rno-miR-128a 14 42 -UUUUCUCUGG-------CCAAGUGACACU- :|::|||:|: || ||||||: GGAGGGAGGCUCACCCAAGG---ACUGUGGC Zfand2b; Airapl rno-miR-128b 14 42 -CUUUCUCUGG-------CCAAGUGACACU- ||::|||:|: || ||||||: GGAGGGAGGCUCACCCAAGG---ACUGUGGC Zfand2b; Airapl rno-miR-135b 59 88 -GUGUA----UCCUUA----CUUUUCGGUAU |||| ||||| ||:||||| ACACAGGGAAAGGAAGCACAGAGAAGCCU-- Zfand2b; Airapl rno-miR-145 281 313 UUCCCUAAG--GACCCUU-------UUGACCUG ||||| ||||||| :||||| CAGGGAGAGGGCUGGGAAGAGUAAAGACUGGU- Zfand2b; Airapl rno-miR-150 3 24 GUGACCAUGUUCCCAACCCUCU- |||| :| ||| |||||: -UCUGG-GCUUGGGGAGGGAGGC Zfand2b; Airapl rno-miR-187 261 287 GCCGACGUUGUGU----UCUGUGCU- |||||| |||:: ||||| |: GGGCUGCCACAUGUAGCAGACAGGGA Zfand2b; Airapl rno-miR-189 168 208 -UGACUAUAGUCGAG---------------UCAUCCGUG- :|||| |||| :|||||::| GGCUGAGAAGCGCUCUCUGGUUGGGGCCUUGGUAGGUGCU Zfand2b; Airapl rno-miR-199a 278 298 CUUGUCCAUCAGACUUGUGACCC- :||||| ||: :||||| AGACAGGGA----GAGGGCUGGGA Zfand2b; Airapl rno-miR-206 27 56 -GGUG--UGUGAA--GGAAUGUA-AGGU- ||| || | ||| |||| |||| CCCAAGGACUGUGGCCCUCACAUCUCCAG Zfand2b; Airapl rno-miR-207 281 304 UUCCCUCCUCUCGGUCCUCUUCG- ||||| |||:||::||| :||: CAGGGA-GAGGGCUGGGAAGAGUA Zfand2b; Airapl rno-miR-20b* 13 42 GUCUUCA--CGAGUG------UGACGUCA :||:| |||||| ||||::| GGGAGGGAGGCUCACCCAAGGACUGUGGC Zfand2b; Airapl rno-miR-212 289 318 -CCGGCA----------CUGACCUCUGACAAU |||:| |||||| ||:| GGGCUGGGAAGAGUAAAGACUGGUGAUUA--- Zfand2b; Airapl rno-miR-222 256 279 CUCUGGGUCAU--CGGUCUACAUCGA |||:| |||| ||||||| ---CCCCGGGGCUGCCACAUGUAGCA Zfand2b; Airapl rno-miR-291-3p 55 79 -CCGUGUGUUUCA--CCUUCGUGAAA ||:|||||::| |||||||| GGGUACACAGGGAAAGGAAGCACA-- Zfand2b; Airapl rno-miR-292-5p 172 194 GUUUUCUCGGGGGUCAAACUCA |:||| ||:|:| | |||:| GAGAAGCGCUCUCUGGUUGGGG Zfand2b; Airapl rno-miR-296 5 27 UGUCCUAACUCC-CCC-CCGGGA :|| |||:|| ||| |||:| -UGGGCUUGGGGAGGGAGGCUCA Zfand2b; Airapl rno-miR-29a 183 210 UUGGCUAAA---GU--CUA-CCACGAU- |:|:|| | |:| ||||||| -UCUGGUUGGGGCCUUGGUAGGUGCUAA Zfand2b; Airapl rno-miR-326 114 145 UGACCUCCUU-------CC-CGGG--UCUCC- ||||||| || |||: ||||| -GUGGAGGAUGUUCCAUGGAGCCUGGAGAGGA Zfand2b; Airapl rno-miR-327 39 59 -UGGGAGUACGGGGAGUUCC- :|||||| :|:| ||:|| GGCCCUCACAUCUC-CAGGGU Zfand2b; Airapl rno-miR-328 141 169 UGCCUUCC--------CGUCU-CUCCCGGUC |||||| ||||| |||||: -AGGAAGGAAGCUUGUGCAGAAGAGGGUG-- Zfand2b; Airapl rno-miR-337 259 298 UUUCCGUA---GUAUAUC------------CUCGACUU- ::||| |||:||| |:||||:: CGGGGCUGCCACAUGUAGCAGACAGGGAGAGGGCUGGGA Zfand2b; Airapl rno-miR-339 260 288 ACUCGA-GG---ACCUC--CUGUCCCU- |:||| || || || |||||||| GGGGCUGCCACAUGUAGCAGACAGGGAG Zfand2b; Airapl rno-miR-343 2 24 -AGACCCGUGUGCCUCCCUCU- ||||||| : ||||||||: GUCUGGGCUUGGGGAGGGAGGC Zfand2b; Airapl rno-miR-346 160 196 -UCUCCGUCCG--------UGAGU--CCG--UCUGU ||||| ||| :||| ||: :|:| AAGAGGGUGGCUGAGAAGCGCUCUCUGGUUGGGGCC Zfand2b; Airapl rno-miR-349 185 209 UCUCCAAUUCUG---UCGUCC-CGAC ||||::|:| :|:||| ||| --UGGUUGGGGCCUUGGUAGGUGCUA Zfand2b; Airapl rno-miR-351 19 59 GUCCGAGU---UUCC------CGAGGAG--------UCCCU ||||||| |||| || |||| |||| GAGGCUCACCCAAGGACUGUGGC-CCUCACAUCUCCAGGGU Zfand2b; Airapl rno-miR-363-3p 141 161 UGUCUACCUAUGG-CACGUUAA :|| ||| :|: |||||: -AGGAAGGAAGCUUGUGCAGA- Zfand2b; Airapl rno-miR-370 257 281 UUGGUCCAA--GGUG-GGGUCGUCCG ||:|| |||| : :||||| -CCCGGGGCUGCCACAUGUAGCAGA- Zfand2b; Airapl rno-miR-378 73 111 -UGUGUC-C--UGGACCU------------CAGUCCUC- :||||| | :|||||| | |||||| AGCACAGAGAAGCCUGGAUCACAGAGACAAG-CAGGAGU Zfand2b; Airapl rno-miR-412 289 320 UGCCGAUCAC--------CUGGUCCACU--UCA ||||:| |||: ||||| ||| -GGGCUGGGAAGAGUAAAGACU-GGUGAUUAGU Zfand2b; Airapl rno-miR-449 208 232 -UGGUCGAUUGUUAU--GUGACGGU ||||| |||| ||| ||| AACCAGACU-CAAUCCCCACAGCCU Zfand2b; Airapl rno-miR-483 275 316 -UGUUCUG-CCCUC-CCC--UCCU-------------CACU :| |||| ||||| ||| :||| |||| AGC-AGACAGGGAGAGGGCUGGGAAGAGUAAAGACUGGUGAU Zfand2b; Airapl rno-miR-501 43 69 AAAGUG----GGUCCC-UGU-UUCCUAA |||| |||||| ||| |:||| -CUCACAUCUCCAGGGUACACAGGGAA- Zfand2b; Airapl rno-miR-541 202 225 ACACUGGUUGUAGUCU----UAGGGAA ||| |:||| |||| ||||| GGUG-CUAAC--CAGACUCAAUCCCC- Zfand2b; Airapl rno-let-7a 230 250 uuGAUAUGUUGGAUGAUGGAGU || |||| | ||:|||| || ctCT-TACATCGTATTACCCCA Zfand2b; Airapl rno-let-7b 208 233 UUGG--UGUGUU--GGAUGAUGGAGu |||| || ||| || || :|||| AACCAGACTCAATCCCCACAGCCTCt Zfand2b; Airapl rno-let-7c 208 233 UUGGUAU--GUU--GGAUGAUGGAGu ||||| | ||| || || :|||| AACCAGACTCAATCCCCACAGCCTCt Zfand2b; Airapl rno-miR-10a 45 68 GUGUUUAAG-CCUAGAUGUCCCau |||| | | ||:| |||||| CACATCTCCAGGGTACACAGGGaa Zfand2b; Airapl rno-miR-125b 44 67 AGUGUUCA-AUCCCA-GAGUCCCU ||||| | ||||| | |||||| TCACATCTCCAGGGTACACAGGGA Zfand2b; Airapl rno-miR-128a 15 40 uUUUCUC----UGG---CCAAGUGACACu |::||| ||| || |||||| gAGGGAGGCTCACCCAAGG---ACTGTGg Zfand2b; Airapl rno-miR-128b 15 40 CUUUCUC----UGG---CCAAGUGACACu ||::||| ||| || |||||| GAGGGAGGCTCACCCAAGG---ACTGTGg Zfand2b; Airapl rno-miR-135b 60 89 GUG----UAUCCUU----ACUUUUCGGuau ||| | ||||| ||:||||| CACAGGGAAAGGAAGCACAGAGAAGCCtgg Zfand2b; Airapl rno-miR-145 282 313 UUCC-CUAAGGACCC-------UUUUGACCug |:|| || ||||| ||:||||| AGGGAGAGGGCTGGGAAGAGTAAAGACTGGtg Zfand2b; Airapl rno-miR-150 1 18 gugaCCAUGUUCCCAA-CCCUCu ||| | :|| || ||||| ----GGT-CTGGGCTTGGGGAGg Zfand2b; Airapl rno-miR-189 183 206 uGACUAUAGUC-GAGUCAUCCGUG |||:| :| ||::|||||::| tCTGGTTGGGGCCTTGGTAGGTGC Zfand2b; Airapl rno-miR-199a 289 312 CUUG-UCCAUCAGACUUGUGACCc |::| :|| || | || ||||| GGGCTGGGAAGAGTAAAGACTGGt Zfand2b; Airapl rno-miR-206 28 54 GGUGUGUGA-A---GGAAUGUA-AGGU ||| : ||| | ||| |||| |||| CCAAGGACTGTGGCCCTCACATCTCCA Zfand2b; Airapl rno-miR-207 270 291 uUCCCUCCUCUCGGUCCUCUUCg | | || ||| | :|||||:| cATGTAGCAGA-CAGGGAGAGGg Zfand2b; Airapl rno-miR-20b* 16 41 guCUUCACGAGUG------UGACGUCa |:|| |||||| ||||::| agGGAG-GCTCACCCAAGGACTGTGGc Zfand2b; Airapl rno-miR-212 290 313 CCGGCACUGACC---UCUGACAAu |||:| || | |||||| | GGCTGGGAAGAGTAAAGACTGGTg Zfand2b; Airapl rno-miR-218 61 79 UGUACCAAUCUAGUUCGUGUu ||| || ||: ||||||| ACAGGGAAAGG--AAGCACAg Zfand2b; Airapl rno-miR-221 253 278 cuuuGGG--UCGUCUGU-UACAUCGa ||| :|| | || ||||||| tttcCCCGGGGCTGCCACATGTAGCa Zfand2b; Airapl rno-miR-222 253 278 cucuGGGUCAU--CGGUCUACAUCGa |||:| : |||| ||||||| tttcCCCGGGGCTGCCACATGTAGCa Zfand2b; Airapl rno-miR-291-3p 56 80 CCGUGUGUUUC--ACCUUCGUGaaa ||:|||||::| |||||||| GGTACACAGGGAAAGGAAGCACaga Zfand2b; Airapl rno-miR-296 4 26 uguCCUAACUCC-CCC-CCGGGa || |||:|| ||| |||:| ctgGGCTTGGGGAGGGAGGCTCa Zfand2b; Airapl rno-miR-29a 188 208 uuggcuaaagucuaCCACGAU ||||||| ttggggccttggtaGGTGCTA Zfand2b; Airapl rno-miR-326 112 141 UG-ACCUCCU------U-CC-CGGGUCUCc || ||||||| | || |||::||| ACGTGGAGGATGTTCCATGGAGCCTGGAGa Zfand2b; Airapl rno-miR-327 40 56 uGGGAGUACGGGGAGUUCC |||||| | :||| ||| gCCCTCA--CATCTCCAGG Zfand2b; Airapl rno-miR-328 144 170 UGCCUUC---C-CGUC-UCUCCCgguc | ||||| | |||| |||||| AAGGAAGCTTGTGCAGAAGAGGGtggc Zfand2b; Airapl rno-miR-336 1 22 uCUGAUCU-AUACCUUCCCACu | ||:|: | ||:|||| | gGTCTGGGCTTGGGGAGGGAGg Zfand2b; Airapl rno-miR-337 272 296 uuucCGU-AGUAUAUC-CUCGACuu ||| || : || |:|||| tgtaGCAGACAGGGAGAGGGCTGgg Zfand2b; Airapl rno-miR-339 260 286 aCUCGA-GG---ACCUC--CUGUCCCU |:||| || || || |||||||| gGGGCTGCCACATGTAGCAGACAGGGA Zfand2b; Airapl rno-miR-343 3 22 AGACCCGUGUGCCUCCCUCu ||||||| :: |||||||| TCTGGGCTTGGGGAGGGAGg Zfand2b; Airapl rno-miR-346 139 162 UCUCCGUCCGU-GAGUCCGUCUgu ||||| ||| | ||:: ||||| AGAGGAAGGAAGCTTGTGCAGAag Zfand2b; Airapl rno-miR-349 183 208 ucuCCAAUUCUG---UCGUCC-CGAc ||||::|:| :|:||| ||| tctGGTTGGGGCCTTGGTAGGTGCTa Zfand2b; Airapl rno-miR-351 46 67 guccGAGUUUCCCGAGGAGUCCCU ||| |||| | | |||||| acatCTC-CAGGG-TACACAGGGA Zfand2b; Airapl rno-miR-351 5 34 guCCGAGUUUC-----CCGAG-GAGUCCCU ||||::::| ||||| | || ||| tgGGCTTGGGGAGGGAGGCTCACCCAAGGA Zfand2b; Airapl rno-miR-363-3p 140 161 uguCUACCUAUG-GCACGUuaa || ||| :| :||||| gagGAAGGAAGCTTGTGCAgaa Zfand2b; Airapl rno-miR-370 256 285 uuGGUCC--AAGGUGGG----GUC-GUCCg ||:|| | |||| : ||| |||| ccCCGGGGCTGCCACATGTAGCAGACAGGg Zfand2b; Airapl rno-miR-378 91 109 uGUGUC-CUGGACCUCAGUCCUC ||||| ||| || |||||| tCACAGAGAC---AAG-CAGGAG Zfand2b; Airapl rno-miR-412 288 319 UGCCGA----UCAC----CUGGUCCACU--UCA | |||| || | |||: ||||| ||| AGGGCTGGGAAGAGTAAAGACT-GGTGATTAGT Zfand2b; Airapl rno-miR-449 209 231 UGGUC-GAUUGUUA--UGUGACGGu ||||| || |||| ||| ||| ACCAGACT--CAATCCCCACAGCCt Zfand2b; Airapl rno-miR-483 280 304 UGUUCUGCCCUC--CCCUCCUCAcu |||:|: | |:| |||| |||| ACAGGGAGAGGGCTGGGAAGAGTaa Zfand2b; Airapl rno-miR-485 213 233 CUUAAGUAGUGCCG-GUCGGAGA || | ||| | | |||||||| GACTCAATCCC--CACAGCCTCT Zfand2b; Airapl rno-miR-501 55 74 aaagUGGGUCCCUGUUUCCUaa || ||||| |||||| gggtACACAGGG--AAAGGAag Zfand2b; Airapl rno-miR-541 202 225 aCACUGGUUGUAGUC----UUAGGGaa ||| |:||| ||| |||||| gGTG-CTAAC--CAGACTCAATCCCca Zfand2b; Airapl rno-miR-218 72 79 ------------------------UGUACCAAUCUAGUUCGUGUU ||| || ||: |||||||: GUGGCCCUCACAUCUCCAGGGUACACAGGGAAAGG--AAGCACAGA Zfand2b; Airapl rno-miR-221 271 278 CUUU-----------------GGG--UCGUCUGU-UACAUCGA ||| :|| | || ||||||| CAUCGUAUUACCCCACUUUUCCCCGGGGCUGCCACAUGUAGCA Zfand2b; Airapl rno-miR-222 271 278 CUCU-----------------GGGUCAU--CGGUCUACAUCGA |||:| |||| ||||||| CAUCGUAUUACCCCACUUUUCCCCGGGGCUGCCACAUGUAGCA Zfand2b; Airapl rno-miR-339 279 286 A----------------CUCGA-GG---ACCUC--CUGUCCCU |:||| || || || |||||||| UACCCCACUUUUCCCCGGGGCUGCCACAUGUAGCAGACAGGGAG Zfand2b; Airapl rno-miR-485 226 233 CUUA---------------------AGU-AGUGCCGGUCGGAGA ||| || | |||||||| GGGCCUUGGUAGGUGCUAACCAGACUCAAUC-CCCACAGCCUCUU

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Zfand2b RAID01474710 rno-miR-218a-5p miRNA MIMAT0000888 Zfand2b mRNA 363253 Prediction 0.1828 Zfand2b RAID02673770 rno-miR-339-5p miRNA MIMAT0000583 Zfand2b mRNA 363253 Prediction 0.1828 Zfand2b RAID03111069 rno-miR-3544 miRNA MIMAT0017798 Zfand2b mRNA 363253 Prediction 0.1828 Zfand2b RAID03557488 rno-miR-485-5p miRNA MIMAT0003203 Zfand2b mRNA 363253 Prediction 0.1828 Zfand2b RAID03591328 rno-miR-874-5p miRNA MIMAT0017290 Zfand2b mRNA 363253 Prediction 0.1828 Zfand2b RAID03679258 rno-miR-343 miRNA MIMAT0000591 Zfand2b mRNA 363253 Prediction 0.1828