DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000547 rno-miR-322* 85430 Herpud1 acaacgucgcgaaGUACAAa |||||| gugacuugcuagaCAUGUUa 2 8 424 443 [rn4:19:11036701-11036720:-] 0.7899 120 6 -10.35 -0.1140 MIMAT0000554 rno-miR-324-3p 85430 Herpud1 ggucgucguggacccCGUCACc |||||| auugcuuuuuaaaacGCAGUGc 2 8 476 497 [rn4:19:11036647-11036668:-] 0.7458 120 6 -13.37 -0.1511 MIMAT0004639 rno-miR-325-3p 85430 Herpud1 aacuauccuccACGAGUUAUUu ||:||||||| gccggguuuucUGUUCAAUAAa 2 12 539 560 [rn4:19:11036584-11036605:-] 0.6799 151 7 -13.65 -1.2333 MIMAT0000568 rno-miR-330* 85430 Herpud1 agaGACGUCCGGGACACGAAAcg :||:| :| | |||||| uuaUUGUA--UCAU-UGCUUUuu 3 21 466 485 [rn4:19:11036659-11036678:-] 0.7458 123 0 -7.99 -0.1675 MIMAT0004646 rno-miR-338* 85430 Herpud1 gugagucgugguccuAUAACAa |||||| uuucuaggagagacuUAUUGUa 2 8 452 473 [rn4:19:11036671-11036692:-] 0.8117 120 6 -10.24 -0.1718 MIMAT0000610 rno-miR-352 85430 Herpud1 augauacgUUGGAUGAUGAGa |:: |||||||: uuacacuaAGUGUACUACUUu 2 14 394 414 [rn4:19:11036730-11036750:-] 0.7680 133 0 -13.37 -0.2713 MIMAT0004705 rno-let-7b* 85430 Herpud1 ccCUUCCGUCAUCCAACAUAuc |:|| | | |||||| uaGGAGAGACU-UAUUGUAUca 3 21 456 476 [rn4:19:11036668-11036688:-] 0.8117 122 0 -7.97 -0.3607 MIMAT0004708 rno-miR-9* 85430 Herpud1 ugAAAGCCAAU-AGA----UCGAAAUa | || |||| ||| ||||||| caUGUC-GUUAUUCUGAAGAGCUUUAa 2 21 168 193 [rn4:19:11036951-11036976:-] 0.5750 148 7 -10.97 -1.0130 MIMAT0004718 rno-miR-29a* 85430 Herpud1 gacuugugguuuucuUUAGUCa |||||| uguacuacuuuauauAAUCAGu 2 8 404 425 [rn4:19:11036719-11036740:-] 0.7680 120 6 -10.46 -0.1580 MIMAT0004731 rno-miR-125b* 85430 Herpud1 uccaggguucucggACUGAACa ||||||| cuuuauauaaucagUGACUUGc 2 9 411 432 [rn4:19:11036712-11036733:-] 0.7899 140 7 -10.53 -0.9700 MIMAT0000847 rno-miR-142-5p 85430 Herpud1 ucaUCACGAAAGAUGAAAUAc |||| | ||||||||| cuaAGUG--UACUACUUUAUa 2 19 399 417 [rn4:19:11036727-11036745:-] 0.7680 159 7 -13.99 -1.3206 MIMAT0004738 rno-miR-199a-3p 85430 Herpud1 auUGGUUACACGUCUGAUGAca ||:|| |||: |||||| acACUAA-GUGU--ACUACUuu 3 21 396 414 [rn4:19:11036730-11036748:-] 0.7680 135 0 -12.94 -0.2445 MIMAT0004738 rno-miR-199a-3p 85430 Herpud1 auUGGUUACACGUCUG-AUGACa | |: |||| || ||||| aaAACGCAGUGCUUACUUACUGa 2 21 486 508 [rn4:19:11036636-11036658:-] 0.6799 120 0 -14.88 -0.5577 MIMAT0003175 rno-miR-543* 85430 Herpud1 ucuucacguggcgCUUACAAa ||||||| uugauuccuguugGAAUGUUg 2 9 370 390 [rn4:19:11036754-11036774:-] 0.7680 140 7 -10.08 -0.7390 MIMAT0005286 rno-miR-878 85430 Herpud1 agAUGGGUCAUAC-CACA-GUACg | ||||| | | |||| |||| ccUCCCCAG-ACGUGUGUGCAUGu 2 21 262 284 [rn4:19:11036860-11036882:-] 0.5750 125 0 -21.47 -0.1528 MIMAT0005318 rno-miR-471 85430 Herpud1 cacuuuucgUGAUAUGAUGCAu | |:|||||| | auuacacuaAGUGUACUACUUu 2 14 393 414 [rn4:19:11036730-11036751:-] 0.7680 121 0 -9.89 -0.1117 MIMAT0005321 rno-miR-500 85430 Herpud1 acuugggaaCGGGU-CCA-CGUAa ||||| ||| |||| aaacagaagGCCCAGGGUCGCAUg 2 14 225 248 [rn4:19:11036896-11036919:-] 0.5750 120 0 -20.93 -0.1648 MIMAT0005329 rno-miR-674-5p 85430 Herpud1 auGUGGUGAGG-GUA-GAGUCACg :||:|||:: :|| |||||| ugUACUACUUUAUAUAAUCAGUGa 2 21 404 427 [rn4:19:11036717-11036740:-] 0.7680 130 6 -20.11 -0.3977 MIMAT0005336 rno-miR-760-5p 85430 Herpud1 gcccgagaccaccgGACUCCCc ||||||| gcagugcuuacuuaCUGAGGGc 2 9 491 512 [rn4:19:11036632-11036653:-] 0.6799 140 7 -15.98 -0.5916 MIMAT0005338 rno-miR-770 85430 Herpud1 gcaccGGGUCUGUGCAC-CACGa ||||| ||||| |||| accucCCCAG--ACGUGUGUGCa 2 18 261 281 [rn4:19:11036863-11036883:-] 0.5750 126 0 -26.29 -0.2233 MIMAT0005338 rno-miR-770 85430 Herpud1 gcaccgGGUCUGUGCAC-CACGa :|| | ||||| |||| uggaagUCAUAGACGUGUGUGCa 2 17 295 317 [rn4:19:11036827-11036849:-] 0.5750 124 0 -20.65 -0.3516 MIMAT0005596 rno-miR-551b 85430 Herpud1 ugAC-UUUG-GUUC--AUACCCAGCGg || |||| ||| ||||||| acUGUAAACAGAAGGCCCAGGGUCGCa 2 22 220 246 [rn4:19:11036898-11036924:-] 0.5750 142 7 -24.49 -0.4377 MIMAT0012831 rno-miR-544 85430 Herpud1 cucgaaCGAUUUUUACGUCUUa |: | |:|||||||| auggaaGUCAUAGAUGCAGAAa 2 17 330 351 [rn4:19:11036793-11036814:-] 0.5750 156 7 -12.12 -0.6752 MIMAT0012839 rno-miR-668 85430 Herpud1 ccaucacccggcucggcUCACUGu |||||| uacuacuuuauauaaucAGUGACu 2 8 406 429 [rn4:19:11036715-11036738:-] 0.7680 120 6 -8.80 -0.2047 MIMAT0012840 rno-miR-802 85430 Herpud1 uucCUACUUAGAA--ACA-AUGACu || ||: :|| ||| ||||| ucuGAAGAGCUUUAAUGUAUACUGu 2 20 179 203 [rn4:19:11036941-11036965:-] 0.5750 122 0 -10.69 -0.8743 MIMAT0012846 rno-miR-201 85430 Herpud1 uucuUGUUACG---GAAUGACUCa :||:||| ||||||||| aaacGCAGUGCUUACUUACUGAGg 2 18 487 510 [rn4:19:11036634-11036657:-] 0.6799 160 7 -21.27 -0.2761 MIMAT0004650 rno-miR-340-5p 85430 Herpud1 uuAGUCAGAGUAACGAAAUAUu | ||| | | | ||||||| acUAAGUGU-ACUACUUUAUAu 2 21 398 418 [rn4:19:11036726-11036746:-] 0.7680 154 7 -6.97 -1.2696 MIMAT0000615 rno-miR-101b 85430 Herpud1 aagUCGAUAGUGU-CAUGACAu |||| | |:: |||||| aagAGCUUUAAUGUAUACUGUa 2 19 183 204 [rn4:19:11036940-11036961:-] 0.5750 125 6 -12.25 -0.1083 MIMAT0000811 rno-miR-32 85430 Herpud1 acguugAAUCAUUAC-ACGUUAu ||:| |||| |||||| uuccugUUGG-AAUGUUGCAAUu 2 17 374 395 [rn4:19:11036749-11036770:-] 0.7680 126 6 -11.67 -1.0096 MIMAT0000818 rno-miR-96 85430 Herpud1 ucGUUUUUACACGA--UCACGGUUu ::| :||||||| ||||||| gaUGACGAUGUGCUUCUGUGCCAAg 2 22 91 115 [rn4:19:11037029-11037053:-] 0.5750 164 7 -23.30 -0.3674 MIMAT0000823 rno-miR-101a 85430 Herpud1 aagucaauagugucAUGACAu |||||| agagcuuuaauguaUACUGUa 2 8 184 204 [rn4:19:11036940-11036960:-] 0.5750 120 6 -7.83 -0.1094 MIMAT0000824 rno-miR-103 85430 Herpud1 aguaUCGGGAC-AUGUUACGACGa | :|||| |: ||||:||| uuugAUUCCUGUUGGAAUGUUGCa 2 20 369 392 [rn4:19:11036752-11036775:-] 0.7680 146 0 -19.15 -0.1221 MIMAT0000826 rno-miR-107 85430 Herpud1 acuaUCGGGAC-AUGUUACGACGa | :|||| |: ||||:||| uuugAUUCCUGUUGGAAUGUUGCa 2 20 369 392 [rn4:19:11036752-11036775:-] 0.7680 146 0 -21.24 -0.1221 MIMAT0000838 rno-miR-132 85430 Herpud1 gcUGGU-ACCG-AC-AUCUG-ACAAu |:|| || | || ||||| |||| uaAUCAGUGACUUGCUAGACAUGUUa 2 21 418 443 [rn4:19:11036701-11036726:-] 0.7899 125 0 -16.50 -1.0585 MIMAT0000848 rno-miR-142-3p 85430 Herpud1 agguaUUUCAUCCUU--UGUGAUgu || || | || |||||| guuggAAUGUUGCAAUUACACUAag 3 19 379 403 [rn4:19:11036741-11036765:-] 0.7680 133 0 -8.52 -0.2116 MIMAT0000850 rno-miR-144 85430 Herpud1 ucauguAGUAGAUAUGACAu | || |||||||| gagcuuUAAUGUAUACUGUa 2 15 185 204 [rn4:19:11036940-11036959:-] 0.5750 154 7 -12.71 -1.1535 MIMAT0000857 rno-miR-181c 85430 Herpud1 ugagUGGCUGUCCAACU--UACAa ||| ||||| ||| |||| gaaaACCCACAGGAUGACGAUGUg 2 19 79 102 [rn4:19:11037042-11037065:-] 0.5750 122 0 -16.31 -0.2553 MIMAT0000866 rno-miR-191 85430 Herpud1 guCGACGAA--AACCCUAAGG-CAAc |||| || | |||||| ||| cuGCUGGUUCGAUUUGAUUCCUGUUg 2 22 357 382 [rn4:19:11036762-11036787:-] 0.7680 124 0 -18.76 -1.1852 MIMAT0000871 rno-miR-196a 85430 Herpud1 ggGUUGUUGUACUU----UGAUGGAu |||: ||| || |||||:| ugCAAUUACACUAAGUGUACUACUUu 2 21 389 414 [rn4:19:11036730-11036755:-] 0.7680 135 0 -11.90 -0.1117 MIMAT0000883 rno-miR-212 85430 Herpud1 accGGCACUGACC--UCUG-ACAAu | |||||| | |||| |||| aauCAGUGACUUGCUAGACAUGUUa 2 20 419 443 [rn4:19:11036701-11036725:-] 0.7899 130 0 -19.14 -1.0637 MIMAT0000888 rno-miR-218 85430 Herpud1 ugUACCAAUCUAGUUCGUGUu :|| || ||||||| cuGUGCCAAGCAAAAGCACAa 2 20 106 126 [rn4:19:11037018-11037038:-] 0.5750 143 7 -12.23 -0.9771 MIMAT0000890 rno-miR-221 85430 Herpud1 cuUUGGGUCGUCUGUUAC-AUCGa :||::: :|||| ||| |||| guGACUUGCUAGAC-AUGUUAGCa 2 22 424 446 [rn4:19:11036698-11036720:-] 0.7899 127 0 -16.10 -0.8819 MIMAT0000903 rno-miR-320 85430 Herpud1 agcgggagaguugggUCGAAAa |||||| gucguuauucugaagAGCUUUa 2 8 171 192 [rn4:19:11036952-11036973:-] 0.5750 120 6 -13.87 -0.1545 MIMAT0001082 rno-miR-196b 85430 Herpud1 ggGUUGUUGUCCUU----UGAUGGAu |||: ||| || |||||:| ugCAAUUACACUAAGUGUACUACUUu 2 21 389 414 [rn4:19:11036730-11036755:-] 0.7680 135 0 -11.23 -0.1117 MIMAT0001626 rno-miR-431 85430 Herpud1 acgUACU-GCCGGACGUUCUGu || | :| |:||| |||| auaAUCAGUGACUUGCUAGACa 2 19 417 438 [rn4:19:11036706-11036727:-] 0.7899 125 0 -15.72 -0.1484 MIMAT0001633 rno-miR-451 85430 Herpud1 uugAGUCAUUAC--CAUUGCCAAa ||| :||| | ||||||| aagUCAUAGAUGCAGAAACGGUUc 2 20 334 357 [rn4:19:11036787-11036810:-] 0.6715 154 7 -12.03 -0.7793 MIMAT0003119 rno-miR-224 85430 Herpud1 auuugccuUGGUGAUCACUGAAc |: |: |||||||| uacuuuauAUAAUCAGUGACUUg 2 16 409 431 [rn4:19:11036713-11036735:-] 0.7899 151 7 -15.29 -1.1115 MIMAT0003122 rno-miR-370 85430 Herpud1 uugguccaagGUGGGGUCGUCCg ||: ::|||||| acuugcuagaCAUGUUAGCAGGa 2 14 427 449 [rn4:19:11036695-11036717:-] 0.7899 133 6 -22.02 -0.2747 MIMAT0003193 rno-miR-494 85430 Herpud1 ucCAAAGGGCA--CAUACAAAGu | ||||:|| | ||||| | uuGAUUCCUGUUGGAAUGUUGCa 2 20 370 392 [rn4:19:11036752-11036774:-] 0.7680 130 0 -14.32 -0.1695 MIMAT0003196 rno-miR-376b-3p 85430 Herpud1 uucaccUACAAGGAGAUACUa | |||:: |||||| ucaauaAAGUUUUGCUAUGAa 2 16 553 573 [rn4:19:11036571-11036591:-] 0.6799 127 6 -9.80 -0.1097 MIMAT0003199 rno-miR-381 85430 Herpud1 cucucgaacgggAACAUAu |||||| aggagagacuuaUUGUAUc 2 8 457 475 [rn4:19:11036669-11036687:-] 0.8117 120 6 -13.05 -0.2620 MIMAT0005303 rno-miR-196c 85430 Herpud1 ggGUUGUUGUGCUU----UGAUGGAu |||: |||| || |||||:| ugCAAUUACACUAAGUGUACUACUUu 2 21 389 414 [rn4:19:11036730-11036755:-] 0.7680 143 0 -14.15 -0.1117 MIMAT0005310 rno-miR-384-3p 85430 Herpud1 uaACACUUGUU----AAAGAUCCUUa ||| |:||: |||||||||: caUGUUAGCAGGACUUUUCUAGGAGa 2 21 437 462 [rn4:19:11036682-11036707:-] 0.8117 147 0 -18.67 -0.2896 MIMAT0005311 rno-miR-410 85430 Herpud1 uguccgguagacacAAUAUAa |||||| cuaaguguacuacuUUAUAUa 2 8 399 419 [rn4:19:11036725-11036745:-] 0.7680 120 6 -4.67 -0.1961 MIMAT0005312 rno-miR-411 85430 Herpud1 gcAUGCGAUAUGCCA-GAUGAu ||| ||| | || ||||| auUACACUA-AGUGUACUACUu 2 20 393 413 [rn4:19:11036731-11036751:-] 0.7680 121 0 -10.93 -1.1936

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G120000 Herpud1 Rattus norvegicus 85430

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Herpud1; SUP; rCG_39087 rno-let-7f 412 435 UUGAUAUGUUAGA---UGAUGGAGU :||||:|||| ||| || -UUUAUAUAAUCAGUGACUUGCUA- Herpud1; SUP; rCG_39087 rno-miR-1* 289 318 CCCAUGUAUU-------UCUUCAUACACG- ||||||:: ||| ||:||||| -CGUACAUGGAAGUCAUAGACGUGUGUGCA Herpud1; SUP; rCG_39087 rno-miR-100 344 367 GUGUUCAAGCCUAGAUGCCCAA- :||: ||| |||:| |||| UGCAGAAACGGUUCUGCUGGUUC Herpud1; SUP; rCG_39087 rno-miR-101a 206 227 GAAGUCAAUAGUGUCA-UGACAU- :||| |||:|| |||||| --GUAGUC-UCAUAGGCACUGUAA Herpud1; SUP; rCG_39087 rno-miR-103 1 23 AGUAUC-GGGACAUGUUACGACGA- |:| ||||||:| ||:|||| ---UGGCCCCUGUGCUCUGUUGCUG Herpud1; SUP; rCG_39087 rno-miR-107 1 23 ACUAUC-GGGACAUGUUACGACGA- |:| ||||||:| ||:|||| ---UGGCCCCUGUGCUCUGUUGCUG Herpud1; SUP; rCG_39087 rno-miR-10b 342 365 -UGUGUUUAAGCCAAGAUGUCCC |::||:| |||||||:| || GAUGCAGAAACGGUUCUGCUGGU Herpud1; SUP; rCG_39087 rno-miR-127 24 50 -UCGGU----UCGAGUCUG-CCUAGGCU :||: ||||::||| ||||| AGGCUUUCACAGCUUGGACUGGAUCG-- Herpud1; SUP; rCG_39087 rno-miR-130b 8 46 -UACGGGA-------------AAGUAGU--AACGUGAC- :|||:|| |||| || ||| |||| UGUGCUCUGUUGCUGGAGGCUUUCA-CAGCUUGGACUGG Herpud1; SUP; rCG_39087 rno-miR-140* 355 385 ACAGGC-ACCAAGAU------GGGACA-CCAU ||:| |||||| :||||| || -UUCUGCUGGUUCGAUUUGAUUCCUGUUGGA- Herpud1; SUP; rCG_39087 rno-miR-142-5p 401 418 CAUCACGAAAGAUGAAAUAC ||||: ||||||||| -AAGUGUA--CUACUUUAUA Herpud1; SUP; rCG_39087 rno-miR-144 183 206 GAUCAUGUAG-UAGAUAUGACAU- || :| || ||||||||| -AAGAGCUUUAAUGUAUACUGUAU Herpud1; SUP; rCG_39087 rno-miR-145 15 49 UUCCCUAAGGACC-CU------------UUUGACCUG- :|| |||| |: ::||||||: ----UGUUGCUGGAGGCUUUCACAGCUUGGACUGGAUC Herpud1; SUP; rCG_39087 rno-miR-152 234 260 -GGGUUCAAG---ACAGUACGUGACU- ||||:| |||: ||| |||| GCCCAGGGUCGCAUGUUCUGC-CUGAG Herpud1; SUP; rCG_39087 rno-miR-18 249 266 AUAGACGUGAUCUACGUGGAAU ||||| || || |||||| -UUCUGC-CU-GA-GCACCUC- Herpud1; SUP; rCG_39087 rno-miR-181c 82 103 UGAGUGGCUGUCCAACU--UACAA ||| ||||| ||| |||| ---AACCCACAGGAUGACGAUGUG Herpud1; SUP; rCG_39087 rno-miR-183 272 294 GUCACUUAAGAUGGUCACGGUAU- ||| :| |: |||||:|| -CGUGUGUGC-AUGUGUGCCGUAC Herpud1; SUP; rCG_39087 rno-miR-184 532 557 -UGGGAAUAG-UCAAGAGGCAGGU- :||:||: :|||:||:||:|| AGCCUUUGCCGGGUUUUCUGUUCAA Herpud1; SUP; rCG_39087 rno-miR-189 198 223 -UGACUAUAGUC-GAGUCAUCCGUG- |||| :|| |||| ||||||| UACUGUAUGUAGUCUCA-UAGGCACU Herpud1; SUP; rCG_39087 rno-miR-191 358 384 UCGACGAAAACC--CUAAGG-CAAC- |||| || |||||| |||| UGCUGGUUCGAUUUGAUUCCUGUUGG Herpud1; SUP; rCG_39087 rno-miR-207 506 536 -UUCCCUCCUCU----CG-GUCCUCUUCG- :|||| || || || |||| |||| UGAGGGCGGCGACUUGGCACAGGUAAAGCC Herpud1; SUP; rCG_39087 rno-miR-214 2 24 GACGGACAGACACGG----ACGACA ||| ||||||: ||||| -GGCCC--CUGUGCUCUGUUGCUGG Herpud1; SUP; rCG_39087 rno-miR-22 490 517 -UGUCAAGAAGU--UGA---CCGUCGAA :|||| ||| ||| |||:|| CGCAGUGCUUACUUACUGAGGGCGGCG- Herpud1; SUP; rCG_39087 rno-miR-22* 158 191 -UUUCGA-----ACGGU-----GACUUCUUGA- |::|| ||:|: |||||||:|| CAGGGCCCCUCAUGUCGUUAUUCUGAAGAGCUU Herpud1; SUP; rCG_39087 rno-miR-221 80 106 CUUUGGGUCGU----CUGUUACAUCGA- ||||||| || |||:|||| ||| AAAACCCA-CAGGAUGACGAUGU-GCUU Herpud1; SUP; rCG_39087 rno-miR-27b 490 512 -CGUCUUGAAUCGGUGACACUU |||| :|||| ::|||| |: CGCAGUGCUUACUUACUGAGGG Herpud1; SUP; rCG_39087 rno-miR-292-3p 495 522 UGUGAGUUU-UGGA--CCGCCG-UGAA- :||:| ||: |||||| |||| -UGCUUACUUACUGAGGGCGGCGACUUG Herpud1; SUP; rCG_39087 rno-miR-297 271 297 -GUACGUAUGUACG--UGUGUAUGUA- |:||::|:||||: :| |:||||| ACGUGUGUGCAUGUGUGC-CGUACAUG Herpud1; SUP; rCG_39087 rno-miR-298 506 543 CCUUCUUGUCGG-GA--------------GGAGACGG- :||::|:|| || |||:|||| -UGAGGGCGGCGACUUGGCACAGGUAAAGCCUUUGCCG Herpud1; SUP; rCG_39087 rno-miR-299 200 230 UACAUACA---------CCCUGCCAUUUGGU ||||||| || || |||||| CUGUAUGUAGUCUCAUAGGCACUGUAAACA- Herpud1; SUP; rCG_39087 rno-miR-324-3p 490 524 GGUCGUCGUG-------GAC-CCCGUC-----ACC- ||||::| ||| ||||:| ||| --CGCAGUGCUUACUUACUGAGGGCGGCGACUUGGC Herpud1; SUP; rCG_39087 rno-miR-324-5p 488 518 UGUG-GUUACGG------GAUCCCCUACGC- || ||:|||: ||: ||| ||| -AACGCAGUGCUUACUUACUGAGGGCGGCGA Herpud1; SUP; rCG_39087 rno-miR-325 498 524 UGUGAAUGACUCGUGGA--UGAUCC- :|||||||||| :| ||| || UUACUUACUGAGGGCGGCGACUUGGC Herpud1; SUP; rCG_39087 rno-miR-326 219 243 -UGACCUC---CUUCCCGGGUCUCC |||| ||| |||||||:| CACUGUAAACAGAA-GGCCCAGGGU Herpud1; SUP; rCG_39087 rno-miR-327 163 187 UGGGAGUACGG-----GGAGUUCC ||||||||:| :|| ||| CCCCUCAUGUCGUUAUUCUGAAGA Herpud1; SUP; rCG_39087 rno-miR-328 506 529 UGCCUUCCCGUCUCUC--CCG-GUC- :|||||:| || ||| ||| ---UGAGGGCGGCGACUUGGCACAGG Herpud1; SUP; rCG_39087 rno-miR-330 1 22 AGAGACGUCC-GGGACACGA---AACG- || ||||||||| |||| -------UGGCCCCUGUGCUCUGUUGCU Herpud1; SUP; rCG_39087 rno-miR-331 211 247 AAG-AUCCUA-----------UCCGGGUCCC--CG- || |||| |||||||||| || CUCAUAGGCACUGUAAACAGAAGGCCCAGGGUCGCA Herpud1; SUP; rCG_39087 rno-miR-338 328 348 AGUUGUUUUAGUGACUACGACCU || :||:|||: ||||| ACAUGGAAGUCAUAGAUGCA--- Herpud1; SUP; rCG_39087 rno-miR-340 478 516 CCGAU--AUU-----UCAU-------UGACU-CUGCCU ||| ||| |||: ||||| |:||| UGCUUUUUAAAACGCAGUGCUUACUUACUGAGGGCGGC Herpud1; SUP; rCG_39087 rno-miR-342 269 300 -CUGCCCACGCUAAAGACACAC--------UCU- |||| |||:| |||||| :|| AGACGUGUGUGCA---UGUGUGCCGUACAUGGAA Herpud1; SUP; rCG_39087 rno-miR-343 53 75 AGACC-CGUGUGC-CUCCCUCU |||| |:: || ||| ||| CCUGGCGUGGACUCGAGAGAGU Herpud1; SUP; rCG_39087 rno-miR-344 20 51 UGCCAGUCCGAA--------ACC-GAUCUAGU- :|| |||||| ||| ||:||||: CUGG--AGGCUUUCACAGCUUGGACUGGAUCGU Herpud1; SUP; rCG_39087 rno-miR-345 217 248 -CGUGAC---------CUGAUCCCCAGUCGU- |||||| |:| ||||| ||| GGCACUGUAAACAGAAGGCCCAGGGUC-GCAU Herpud1; SUP; rCG_39087 rno-miR-346 508 526 UCUCCGUCCG-UGAGUCCGUCUGU :||| ||| |||: |||| -AGGGC-GGCGACUU-GGCAC--- Herpud1; SUP; rCG_39087 rno-miR-351 144 171 GUCCGAGUU-------UCCCGAGGAGUCCCU ||: ||| ||||| ||||| -UGGUACAAACUGAACAGGGCCCCUCAU--- Herpud1; SUP; rCG_39087 rno-miR-376b 96 112 UCACCUACAAGGAGAUACUA ||||| |:|||:|| ---CGAUGUGCUUCUGUGC- Herpud1; SUP; rCG_39087 rno-miR-377 266 289 -GGUUUUCA---ACGGAAACACACUA |||:| || ||| |||||| CCCAGACGUGUGUGCA--UGUGUGC- Herpud1; SUP; rCG_39087 rno-miR-412 510 535 -UGCCGAUC-ACCUG-GUCCACUUCA :|||| ||| | ||||| ||| GGCGGCGACUUGG-CACAGGUAAAGC Herpud1; SUP; rCG_39087 rno-miR-433 139 173 UGUGGCUCC--------------UCGGGUAGUACUA :||| || :|||| ||||| -AGCCGUGGUACAAACUGAACAGGGCCCCUCAUGU- Herpud1; SUP; rCG_39087 rno-miR-451 333 358 -UUGAGUCAUUACCA--UUGCCAAA || ||| :||| ||||||| GAAGUCAUAGAUGCAGAAACGGUUC Herpud1; SUP; rCG_39087 rno-miR-489 285 306 CGACGGUAUAUACACUACAGUAA ||||:|| ||| || ||||| -GUGCCGUACAUG-GAAGUCAUA Herpud1; SUP; rCG_39087 rno-miR-497 76 110 -AUGUUU--GGUGUC--------ACACGACGAC- | ||| |||||| |||||| ||| AUUGAAAACCCACAGGAUGACGAUGUGCUUCUGU Herpud1; SUP; rCG_39087 rno-miR-503 6 24 GUCAUGACAAG-GGCGACGAU- |||| | |:|:||||: ----CCUGUGCUCUGUUGCUGG Herpud1; SUP; rCG_39087 rno-miR-540 235 266 -GGUCCUAGC--------UGGAGAC-UGGA- |||||:||| :||| | |||| CCCAGGGUCGCAUGUUCUGCCUGAGCACCUC Herpud1; SUP; rCG_39087 rno-miR-542-5p 54 71 GCACUGUACUACUAGGGGCUC- ||:|:||: |:|||| -CUGGCGUGGA----CUCGAGA Herpud1; SUP; rCG_39087 rno-miR-96 93 117 UCGUUUUUACACGAU--CACGGUUU- :| :||||||| |||||||: --UGACGAUGUGCUUCUGUGCCAAGC Herpud1; SUP; rCG_39087 rno-miR-99b 343 366 -GCGUUCCAGCCAAGAUGCCCAC :|||: |||||||:| ||| AUGCAGAAACGGUUCUGCUGGUU Herpud1; SUP; rCG_39087 rno-let-7f 392 415 UUGAUAUG--UUAGAUGAUGGAGU ||:|| || |:| ||||||:|:| AATTACACTAAGTGTACTACTTTA Herpud1; SUP; rCG_39087 rno-miR-1* 288 316 ccCAUGUA--UU-----UCUUCAUACACG |||||| || ||| ||:||||| ccGTACATGGAAGTCATAGACGTGTGTGC Herpud1; SUP; rCG_39087 rno-miR-100 346 365 GUGUUCAAGCCUAGAUGCCCAA || || ||| |||:| |||| CAGAA--ACGGTTCTGCTGGTT Herpud1; SUP; rCG_39087 rno-miR-101a 200 225 GAAGU-CAAUAGUGU---CAUGACAU || :| || :|| || | |||||| CTGTATGTAGTCTCATAGGCACTGTA Herpud1; SUP; rCG_39087 rno-miR-10b 343 364 UGUGUUUAAGCCAAGAUGUCCc |::||:| |||||||:| || ATGCAGAAACGGTTCTGCTGGt Herpud1; SUP; rCG_39087 rno-miR-127 28 51 ucgGU-UCGAGUCUG-CCUAGgcu || ||||::||| ||||| tttCACAGCTTGGACTGGATCgtc Herpud1; SUP; rCG_39087 rno-miR-130b 22 44 uacggGAAAGUAGU--AACGUGAC |||||| || ||| |||| ggaggCTTTCA-CAGCTTGGACTG Herpud1; SUP; rCG_39087 rno-miR-133b 138 167 aUCG--ACCA------ACUU-CCCCUGGuu ||| |||| |||| ||| || aAGCCGTGGTACAAACTGAACAGGGCCCct Herpud1; SUP; rCG_39087 rno-miR-140* 354 385 acAGGC-ACCAAGAU------GGGAC-ACCau ||:| |||||| | :|||| ||| gtTCTGCTGGTTCGATTTGATTCCTGTTGGaa Herpud1; SUP; rCG_39087 rno-miR-145 23 47 uUCCCUAAG-GACCCUUUUGACCUg ||| ||| | | ::|||||| gAGGCTTTCACAGCTTGGACTGGAt Herpud1; SUP; rCG_39087 rno-miR-152 235 258 GGGUUCAAG---ACAGUACGUGACU ||||:| || |||: ||| |||| CCCAGGGTCGCATGTTCTGC-CTGA Herpud1; SUP; rCG_39087 rno-miR-18 248 266 auAGACGUGAUCUACGUGGAau ||||| || || |||||| gtTCTGC-CT-GA-GCACCTcc Herpud1; SUP; rCG_39087 rno-miR-181c 79 102 ugagUGGCUGUCCAACU--UACAa ||| ||||| ||| |||| gaaaACCCACAGGATGACGATGTg Herpud1; SUP; rCG_39087 rno-miR-183 271 292 guCACUUAAGAUGGUCACGGUAU ||| :| | |: |||||:|| acGTGTGTGC-ATGTGTGCCGTA Herpud1; SUP; rCG_39087 rno-miR-184 533 555 uGGGAAUAG-UCAAGAGGCAGGU ||:||: | :|||:||:||:|| gCCTTTGCCGGGTTTTCTGTTCA Herpud1; SUP; rCG_39087 rno-miR-189 199 221 UGAC-UAUAGUCGAGUCAUCCGUG |||| ||:| : ||| ||||||| ACTGTATGTAGTCTC-ATAGGCAC Herpud1; SUP; rCG_39087 rno-miR-207 507 534 uUCCCUCCUCU----CG-GUCCUCUUCG |||| || || || |||| |||| gAGGGCGGCGACTTGGCACAGGTAAAGC Herpud1; SUP; rCG_39087 rno-miR-214 1 20 gaCGGACAGACAC-GGACGACa ||| ||||| :|||:|| tgGCC--CCTGTGCTCTGTTGc Herpud1; SUP; rCG_39087 rno-miR-22 491 517 uGUCAAGAA--GUUGA---CCGUCGaa |||| ||| : ||| |||:|| gCAGTGCTTACTTACTGAGGGCGGCga Herpud1; SUP; rCG_39087 rno-miR-22* 164 189 uuucGAACGGU-----GACUUCUUGA | ||:|: |||||||:|| ccctCATGTCGTTATTCTGAAGAGCT Herpud1; SUP; rCG_39087 rno-miR-224 400 431 AUUUGCCUUGGUGA----------UCACUGAAC |||:: | ||:||| ||||||||| TAAGT-GTACTACTTTATATAATCAGTGACTTG Herpud1; SUP; rCG_39087 rno-miR-27b 491 511 CGUCUUGAAUCGGUGACACuu |||| :|||| ::|||| | GCAGTGCTTACTTACTGAGgg Herpud1; SUP; rCG_39087 rno-miR-292-3p 498 520 ugUGAGUUUUGGA---CCGCCG-UGAA |||:| || |||||| |||| ttACTTA----CTGAGGGCGGCGACTT Herpud1; SUP; rCG_39087 rno-miR-297 276 295 guACGUAUGUACGUGUGUAUGUA |||||:::||| |:||||| tgTGCATGTGTGC---CGTACAT Herpud1; SUP; rCG_39087 rno-miR-298 518 541 ccuuCUUGUCGG--GAGGAGACGG | |||| : |||:|||| cttgGCACAGGTAAAGCCTTTGCC Herpud1; SUP; rCG_39087 rno-miR-299 200 230 uACAUACA---------CCCUGCCAUUUGgu ||||||| || || |||||| cTGTATGTAGTCTCATAGGCACTGTAAACag Herpud1; SUP; rCG_39087 rno-miR-324-3p 491 517 gGUCGUCG--UG---GAC-CCCGUCACc |||: || || ||| ||||:| | gCAGT-GCTTACTTACTGAGGGCGGCGa Herpud1; SUP; rCG_39087 rno-miR-324-5p 487 516 UGUG-GUUACG---GGAU--C-CCCUACGC | || ||:||| |:|| | ||| ||| AAACGCAGTGCTTACTTACTGAGGGCGGCG Herpud1; SUP; rCG_39087 rno-miR-326 220 242 UGACCUCCUUC--CCGGGUCUCc |||| | || |||||||:| ACTGTAAACAGAAGGCCCAGGGt Herpud1; SUP; rCG_39087 rno-miR-327 154 172 ugggaguaCGGGGAGUUCc |||||||| | tgaacaggGCCCCTCATGt Herpud1; SUP; rCG_39087 rno-miR-328 489 515 UGCCUUCCCG------UCUCUCCCGguc || | || || | |||||| AC-GCAGTGCTTACTTACTGAGGGCggc Herpud1; SUP; rCG_39087 rno-miR-331 224 243 aagaucCUAUCCGGGUCCCcg || |||||||||| taaacaGA-AGGCCCAGGGtc Herpud1; SUP; rCG_39087 rno-miR-338 342 364 aguuGUUUUAGUGACUACGACCu ||:|| |: | |||||| gatgCAGAAACGGTTCTGCTGGt Herpud1; SUP; rCG_39087 rno-miR-340 495 515 cCGAUAUUUCAUUGACU-CUGCCu ||| | | | ||||| |:||| tGCT-T--ACTTACTGAGGGCGGc Herpud1; SUP; rCG_39087 rno-miR-342 270 290 CUGCCCACGCUAAAG-ACACACucu |||| |||:| | |||||| GACGTGTGTG----CATGTGTGccg Herpud1; SUP; rCG_39087 rno-miR-344 26 49 ugccAGU-CCGAAACCGAUCUAGu ||| |||| | ||:|||| gcttTCACAGCTTGGACTGGATCg Herpud1; SUP; rCG_39087 rno-miR-345 218 246 CGUGAC---------CUGAUCCCCAGUCGU |||||| |:| ||||| ||| GCACTGTAAACAGAAGGCCCAGGGTC-GCA Herpud1; SUP; rCG_39087 rno-miR-346 506 528 uCUCCGUCCG-UGAGUCCGUCUgu |||| ||| |||: |||| | tGAGGGCGGCGACTT-GGCACAgg Herpud1; SUP; rCG_39087 rno-miR-351 149 173 GUCCGAGUU-UCCCGAGGAGUCCcu || || || ||||| ||||| | CAAACTGAACAGGGCCCCTCATGtc Herpud1; SUP; rCG_39087 rno-miR-376b 93 112 ucacCUACAAGGAGAUACua ||||| |:|||:|| tgacGATGTGCTTCTGTGcc Herpud1; SUP; rCG_39087 rno-miR-377 267 289 GGUUUUCA-ACGGAAACACACua |||:| || ||: |||||| CCAGACGTGTGTGCATGTGTGcc Herpud1; SUP; rCG_39087 rno-miR-412 511 534 uGCCGAUCACCUG-GUCCACUUCa |||| | | |:| ||||| ||| gCGGCGACTTGGCACAGGTAAAGc Herpud1; SUP; rCG_39087 rno-miR-433 150 173 UGUGGCU--CCUCGGGUAGUACua | ||:|| |:|||| ||||| AAACTGAACAGGGCCCCTCATGtc Herpud1; SUP; rCG_39087 rno-miR-489 284 305 cgACGGUAUAUACACUACAGUAa ||||:|| ||| || ||||| tgTGCCGTACATG-GAAGTCATa Herpud1; SUP; rCG_39087 rno-miR-497 79 108 aUGUUUGGUGUC--------ACACGACGAC | || |||||| |||||| ||| gAAAACCCACAGGATGACGATGTGCTTCTG Herpud1; SUP; rCG_39087 rno-miR-503 2 22 gucauGACAAG-GGCGACGAu |||| | |:|:|||| ggcccCTGTGCTCTGTTGCTg Herpud1; SUP; rCG_39087 rno-miR-540 236 256 GGUCCUAGC-UG-GAGACUGGA |||||:||| |: :|||| ||| CCAGGGTCGCATGTTCTG-CCT Herpud1; SUP; rCG_39087 rno-miR-542-5p 37 57 gcaCUGUACUACUAGGGGcuc ||| ||| :||||| ttgGACTGGATCGTCCCCtgg Herpud1; SUP; rCG_39087 rno-miR-96 89 115 UCGU--UUUUACACGA--UCACGGUUu || | | :||||||| ||||||| AGGATGACGATGTGCTTCTGTGCCAAg Herpud1; SUP; rCG_39087 rno-miR-99b 344 365 gCGUUCCAGCCAAGAUGCCCAc |||: |||||||:| ||| tGCAGAAACGGTTCTGCTGGTt Herpud1; SUP; rCG_39087 rno-miR-142-5p 410 417 CA-------------------------UCACGAAAGAUGAAAUAC ||||: ||||||||| UCCUGUUGGAAUGUUGCAAUUACACUAAGUGUA--CUACUUUAUA Herpud1; SUP; rCG_39087 rno-miR-144 197 204 GA--------------------UCAUGUAG-UAGAUAUGACAU || :| || ||||||||| GCCCCUCAUGUCGUUAUUCUGAAGAGCUUUAAUGUAUACUGUAU Herpud1; SUP; rCG_39087 rno-miR-224 424 431 -----------AUUUGCCUUGGUGA----------UCACUGAAC |||::| ||:||| ||||||||| UGCAAUUACACUAAGUGU-ACUACUUUAUAUAAUCAGUGACUUGC Herpud1; SUP; rCG_39087 rno-miR-451 350 357 U-------UGAGUCAUUACCA---------------UUGCCAAA :||| |||| ||||||| GCAUGUGUGCUCUAC-AUGGAAGUCAUAGAUGCAGAAACGGUUC Herpud1; SUP; rCG_39087 rno-miR-96 108 115 -----------------UC-GUUUUUACACGAU--CACGGUUU :| ::| :||||||| |||||||: GUCAUUGAAAACCCACAGGAUGACGAUGUGCUUCUGUGCCAAGC

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Herpud1 RAID00221367 rno-miR-181b-5p miRNA MIMAT0000859 Herpud1 mRNA 85430 Prediction 0.1828 Herpud1 RAID00357642 rno-miR-103-3p miRNA MIMAT0000824 Herpud1 mRNA 85430 Prediction 0.1828 Herpud1 RAID00406920 rno-miR-381-3p miRNA MIMAT0003199 Herpud1 mRNA 85430 Prediction 0.1828 Herpud1 RAID00424879 rno-miR-384-3p miRNA MIMAT0005310 Herpud1 mRNA 85430 Prediction 0.1828 Herpud1 RAID00552710 rno-miR-216b-3p miRNA MIMAT0017847 Herpud1 mRNA 85430 Prediction 0.1828 Herpud1 RAID00571011 rno-miR-340-5p miRNA MIMAT0004650 Herpud1 mRNA 85430 Prediction 0.2381 Herpud1 RAID00582343 rno-miR-9a-3p miRNA MIMAT0004708 Herpud1 mRNA 85430 Prediction 0.1828 Herpud1 RAID00588243 rno-miR-32-5p miRNA MIMAT0000811 Herpud1 mRNA 85430 Prediction 0.1828 Herpud1 RAID00886006 rno-miR-181c-5p miRNA MIMAT0000857 Herpud1 mRNA 85430 Prediction 0.2202 Herpud1 RAID00900641 rno-miR-494-3p miRNA MIMAT0003193 Herpud1 mRNA 85430 Prediction 0.1828 Herpud1 RAID00945810 rno-miR-196b-5p miRNA MIMAT0001082 Herpud1 mRNA 85430 Prediction 0.1828 Herpud1 RAID01019540 rno-miR-431 miRNA MIMAT0001626 Herpud1 mRNA 85430 Prediction 0.1828 Herpud1 RAID01037784 rno-miR-142-3p miRNA MIMAT0000848 Herpud1 mRNA 85430 Prediction 0.1828 Herpud1 RAID01089966 rno-miR-101a-3p miRNA MIMAT0000823 Herpud1 mRNA 85430 Prediction 0.1828 Herpud1 RAID01118175 rno-miR-3548 miRNA MIMAT0017806 Herpud1 mRNA 85430 Prediction 0.1828 Herpud1 RAID01144912 rno-miR-132-3p miRNA MIMAT0000838 Herpud1 mRNA 85430 Prediction 0.1828 Herpud1 RAID01257975 rno-miR-181a-5p miRNA MIMAT0000858 Herpud1 mRNA 85430 Prediction 0.1828 Herpud1 RAID01275627 rno-miR-221-3p miRNA MIMAT0000890 Herpud1 mRNA 85430 Prediction 0.1828 Herpud1 RAID01352604 rno-miR-320-3p miRNA MIMAT0000903 Herpud1 mRNA 85430 Prediction 0.1828 Herpud1 RAID01383867 rno-miR-107-3p miRNA MIMAT0000826 Herpud1 mRNA 85430 Prediction 0.1828 Herpud1 RAID01592349 rno-miR-376b-3p miRNA MIMAT0003196 Herpud1 mRNA 85430 Prediction 0.1828 Herpud1 RAID01678959 rno-miR-410-3p miRNA MIMAT0005311 Herpud1 mRNA 85430 Prediction 0.1828 Herpud1 RAID01681145 rno-miR-370-3p miRNA MIMAT0003122 Herpud1 mRNA 85430 Prediction 0.1828 Herpud1 RAID01737483 rno-miR-543-3p miRNA MIMAT0003175 Herpud1 mRNA 85430 Prediction 0.1828 Herpud1 RAID02030434 rno-miR-196c-5p miRNA MIMAT0005303 Herpud1 mRNA 85430 Prediction 0.1828 Herpud1 RAID02165915 rno-miR-191a-5p miRNA MIMAT0000866 Herpud1 mRNA 85430 Prediction 0.1828 Herpud1 RAID02183683 rno-miR-196a-5p miRNA MIMAT0000871 Herpud1 mRNA 85430 Prediction 0.1828 Herpud1 RAID02239008 rno-miR-181d-5p miRNA MIMAT0005299 Herpud1 mRNA 85430 Prediction 0.1828 Herpud1 RAID02327952 rno-miR-411-5p miRNA MIMAT0005312 Herpud1 mRNA 85430 Prediction 0.1828 Herpud1 RAID02592472 rno-miR-466b-3p miRNA MIMAT0017285 Herpud1 mRNA 85430 Prediction 0.1828 Herpud1 RAID02725432 rno-miR-3557-5p miRNA MIMAT0017819 Herpud1 mRNA 85430 Prediction 0.1828 Herpud1 RAID02789365 rno-miR-96-5p miRNA MIMAT0000818 Herpud1 mRNA 85430 Prediction 0.2202 Herpud1 RAID02825969 rno-miR-3572 miRNA MIMAT0017853 Herpud1 mRNA 85430 Prediction 0.1828 Herpud1 RAID02978503 rno-miR-101b-3p miRNA MIMAT0000615 Herpud1 mRNA 85430 Prediction 0.1828 Herpud1 RAID03145095 rno-miR-224-5p miRNA MIMAT0003119 Herpud1 mRNA 85430 Prediction 0.1828 Herpud1 RAID03151907 rno-miR-3573-5p miRNA MIMAT0017856 Herpud1 mRNA 85430 Prediction 0.1828 Herpud1 RAID03156701 rno-miR-218a-5p miRNA MIMAT0000888 Herpud1 mRNA 85430 Prediction 0.1828 Herpud1 RAID03171806 rno-miR-144-3p miRNA MIMAT0000850 Herpud1 mRNA 85430 Prediction 0.2202 Herpud1 RAID03296603 rno-miR-212-3p miRNA MIMAT0000883 Herpud1 mRNA 85430 Prediction 0.1828 Herpud1 RAID03317415 rno-miR-142-5p miRNA MIMAT0000847 Herpud1 mRNA 85430 Prediction 0.1828 Herpud1 RAID03384748 rno-miR-544-3p miRNA MIMAT0012831 Herpud1 mRNA 85430 Prediction 0.1828 Herpud1 RAID03561713 rno-miR-423-5p miRNA MIMAT0017305 Herpud1 mRNA 85430 Prediction 0.1828 Herpud1 RAID03736924 rno-miR-325-3p miRNA MIMAT0004639 Herpud1 mRNA 85430 Prediction 0.2202 Herpud1 RAID03807471 rno-miR-451-5p miRNA MIMAT0001633 Herpud1 mRNA 85430 Prediction 0.1828