DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000577 rno-miR-337 266712 Rnf40 uuUCCGUAGU-AUAUCCUCGACUu |||:: | || ||||||| agAGGUGGGACUAACCGAGCUGAg 2 22 158 181 [rn4:1:186890569-186890592:+] 0.5834 148 7 -17.63 -0.1448 MIMAT0004721 rno-miR-30b-3p 266712 Rnf40 cuGCAUUUGUAGGUGUAGGGUc || : || | |||||||| ccCGGGUUCA-CAACAUCCCAc 2 21 221 241 [rn4:1:186890632-186890652:+] 0.4879 150 7 -16.40 -0.3402 MIMAT0003212 rno-miR-20b-3p 266712 Rnf40 gguCUUCACGAGUGU-GACGUCa ||| || ||||| |||||| ccuGAA-UG-UCACAUCUGCAGc 2 20 190 210 [rn4:1:186890601-186890621:+] 0.5834 131 6 -22.19 -0.4471 MIMAT0005282 rno-miR-872 266712 Rnf40 ggacUUG-AUUGU-UCAUUGGAa ||| | || ||||||| ucacAACAUCCCACUGUAACCUc 2 18 228 250 [rn4:1:186890639-186890661:+] 0.4879 143 7 -9.98 -0.1022 MIMAT0005313 rno-miR-423 266712 Rnf40 ugaCUCCCCGGAGUCUGGCUCGa |||| | | ||||||| ggaGAGGUGGGACUAACCGAGCu 2 21 156 178 [rn4:1:186890567-186890589:+] 0.5834 152 7 -27.26 -0.3764 MIMAT0005321 rno-miR-500 266712 Rnf40 acuugggaaCGG-GUCCACGUAa ||| | ||||||| ugguuugggGCCACUGGUGCAUg 2 14 131 153 [rn4:1:186890542-186890564:+] 0.5834 148 7 -18.90 -0.1069 MIMAT0005327 rno-miR-672 266712 Rnf40 agugugUGUCA-UGUGGUUGGAGu :|| | :| |||||||| ccggggGCAAUGGCCCCAACCUCc 2 18 69 92 [rn4:1:186890480-186890503:+] 0.5521 152 7 -19.64 -0.1003 MIMAT0005337 rno-miR-760-3p 266712 Rnf40 agGGGUGUCUG-GGU-CUCGGc |:: ||||| ||| ||||| ccCUUCCAGACUCCAUGAGCCc 2 19 91 112 [rn4:1:186890502-186890523:+] 0.5939 129 0 -26.82 -0.2164 MIMAT0012846 rno-miR-201 266712 Rnf40 uuCUUGUUACGGAAUGACUCa || | :| :| ||||||| caGACCUGUUUC-UACUGAGa 2 20 261 280 [rn4:1:186890672-186890691:+] 0.4879 149 7 -13.37 -0.2807 MIMAT0000608 rno-miR-351 266712 Rnf40 aguccgaguuucccgagGAGUCCCu ||||||| ---------accugaaaCUCAGGGg 2 9 1 16 [rn4:1:186890412-186890427:+] 0.7567 140 7 -15.98 -0.3236 MIMAT0000829 rno-miR-125a-5p 266712 Rnf40 aguguccaauuucccaGAGUCCCu ||||||| --------accugaaaCUCAGGGg 2 9 1 16 [rn4:1:186890412-186890427:+] 0.7567 140 7 -16.11 -0.3156 MIMAT0000830 rno-miR-125b-5p 266712 Rnf40 aguguucaaucccaGAGUCCCu ||||||| ------accugaaaCUCAGGGg 2 9 1 16 [rn4:1:186890412-186890427:+] 0.7567 140 7 -16.11 -0.3210 MIMAT0000857 rno-miR-181c 266712 Rnf40 ugAGUGGCUGUCCA--ACUUACAa | | :| || | ||||||| gcUGAGUGCCAUCUCCUGAAUGUc 2 21 176 199 [rn4:1:186890587-186890610:+] 0.5834 143 7 -11.76 -0.1235 MIMAT0000858 rno-miR-181a 266712 Rnf40 ugAGUGGCUGUCG-CAACUUACAa | | :| || | ||||||| gcUGAGUGCCAUCUCCUGAAUGUc 2 22 176 199 [rn4:1:186890587-186890610:+] 0.5834 144 7 -12.38 -0.1223 MIMAT0000859 rno-miR-181b 266712 Rnf40 ugggUGGCUGUCG-UUACUUACAa | :| || | ||||||| gcugAGUGCCAUCUCCUGAAUGUc 2 20 176 199 [rn4:1:186890587-186890610:+] 0.5834 142 7 -12.19 -0.1223 MIMAT0000860 rno-miR-183 266712 Rnf40 ucacuuaagauggUCACGGUAu |||||||| acuaaccgagcugAGUGCCAUc 2 10 167 188 [rn4:1:186890578-186890599:+] 0.5834 145 7 -14.73 -0.2161 MIMAT0000883 rno-miR-212 266712 Rnf40 accGGCACU-GACC--UCU-GACAAu :|| || |||| ||| ||||| accUCGGGAGCUGGCCAGACCUGUUu 2 20 246 271 [rn4:1:186890657-186890682:+] 0.4879 125 0 -18.32 -0.2420 MIMAT0003203 rno-miR-485 266712 Rnf40 cuUA-AGUAGUGCCGGUCGGAGa || ||| ||: ||||||| gaAUGUCA-CAUCUGCAGCCUCu 2 21 193 214 [rn4:1:186890604-186890625:+] 0.5834 149 7 -19.71 -0.2919 MIMAT0005299 rno-miR-181d 266712 Rnf40 ugggUGGCUGUUG-UUACUUACAa | :| || | ||||||| gcugAGUGCCAUCUCCUGAAUGUc 2 20 176 199 [rn4:1:186890587-186890610:+] 0.5834 142 7 -12.19 -0.1223

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G055607 Rnf40 Rattus norvegicus 266712

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Rnf40; Bre1b rno-let-7b 193 215 -UUGGUGUGUUGGAUGAUGGAGU ||: ||| |:||:| :|||| GAAUGUCAC-AUCUGCAGCCUCU Rnf40; Bre1b rno-let-7d 194 216 UGAUACGU--UGGAUGAUGGAGA- |||: |:||:| :||||| --AAUGUCACAUCUGCAGCCUCUG Rnf40; Bre1b rno-let-7f 195 215 UUGAUA-UGUUAGAUGAUGGAGU |:| || ||||:| :|||| --AUGUCAC-AUCUGCAGCCUCU Rnf40; Bre1b rno-miR-125b 197 228 -AGUGU-----UCAAU--CCCAGAGUCCCU- ||||| || ||| ||| ||: GUCACAUCUGCAGCCUCUGGGACUCCCGGGU Rnf40; Bre1b rno-miR-128a 214 233 UUUUCUCUGG----CCAAGUGACACU |:|||: ||||||| ---UGGGACUCCCGGGUUCACA---- Rnf40; Bre1b rno-miR-128b 214 233 CUUUCUCUGG----CCAAGUGACACU |:|||: ||||||| ---UGGGACUCCCGGGUUCACA---- Rnf40; Bre1b rno-miR-133a 148 173 -UGU-CGACCAACUUC-CCCUGGUU- :|| || || ||:| |||||:|| UGCAUGCAGGA-GAGGUGGGACUAAC Rnf40; Bre1b rno-miR-133b 138 173 AUCG---ACCAA---------CUUC-CCCUGGUU- :|| |||| ||:| |||||:|| GGGCCACUGGUGCAUGCAGGAGAGGUGGGACUAAC Rnf40; Bre1b rno-miR-134 209 234 GGGAGACCAGUU-GGUC--AGUGU- ||||||| ||:| ||||| GCCUCUGGGACUCCCGGGUUCACAA Rnf40; Bre1b rno-miR-143 173 192 ACUCGAUGUCACGAAGUAGAGU |||||: ||||| |||||| CGAGCUG-AGUGC--CAUCUCC Rnf40; Bre1b rno-miR-145 214 263 UUCCCUAAGGACCC-------------U------------UUUGACCUG |||| ||| ||| | :|:|||| | -UGGGACUCCCGGGUUCACAACAUCCCACUGUAACCUCGGGAGCUGGCCA Rnf40; Bre1b rno-miR-146 207 231 -UUGGGUACCUUAAG---UCAAGAGU |:||: |||:| || :|||| CAGCCUCUGGGACUCCCGGGUUCA-- Rnf40; Bre1b rno-miR-150 141 169 -GUGACCAUGU---UCC-CA--ACCCUCU |||||||:|| ||| | ||||| CCACUGGUGCAUGCAGGAGAGGUGGGAC- Rnf40; Bre1b rno-miR-151* 41 64 AUGAUCUGACAC-----UCGAGGAGCU :|:||||| |||||| | ---GGGGCUGUGCCCCCAGCUCCCCA- Rnf40; Bre1b rno-miR-17 1 24 UGAUGGACG-UGACAUUCGUGAAAC- ||||| ||| ::| |||||| ---ACCUGAAACUCAGGGGACUUUGA Rnf40; Bre1b rno-miR-181a 166 200 -UGAG-----UGGCUGUCGCA-----ACUUACAA ||| :|:|| || ||||||| GACUAACCGAGCUGAGUGCCAUCUCCUGAAUGUC Rnf40; Bre1b rno-miR-181c 166 200 -UGAGUGGCU-GUC-CA---------ACUUACAA ||| ||||| | | || ||||||| GACUAACCGAGCUGAGUGCCAUCUCCUGAAUGUC Rnf40; Bre1b rno-miR-183 160 189 GUCACUUAAGA-UGG------UCACGGUAU :|||:: || ||| |||||||| AGGUGGGA-CUAACCGAGCUGAGUGCCAUC Rnf40; Bre1b rno-miR-184 296 320 -UGGGAAUAGUCAAGAGGCAGGU- :||| || :| ||| |||| UGCCCCUAAAGGGGAUCCCUCCAC Rnf40; Bre1b rno-miR-193 212 265 -GACCCUGA---------------A-----ACAU------------CCGGUCAA |||||||| | |||| |||||| UCUGGGACUCCCGGGUUCACAACAUCCCACUGUAACCUCGGGAGCUGGCCAGA- Rnf40; Bre1b rno-miR-199a 127 149 CUUGUCCAUCAGACUU--GUGACCC || |:||:||:: |||||| ---GAGAUGGUUUGGGGCCACUGGU Rnf40; Bre1b rno-miR-205 137 160 GUCUGA-GGCCACCUUACUUCCU- :|:| |:|||| ||| |||| GGGGCCACUGGUGC-AUGCAGGAG Rnf40; Bre1b rno-miR-207 136 179 UUCCC--------------UCCUCUCGGUCCUC-----UUCG :||| ||||||| ::||| :||| UGGGGCCACUGGUGCAUGCAGGAGAGGUGGGACUAACCGAGCU Rnf40; Bre1b rno-miR-20a 1 24 GAUGGACG-UGAUAUUCGUGAAAU- ||||| ||| ::| |||||: --ACCUGAAACUCAGGGGACUUUGA Rnf40; Bre1b rno-miR-20b 1 24 UGGACG-UGAUACUCGUGAAAC- ||||| ||| |:| |||||| ACCUGAAACUCAGGGGACUUUGA Rnf40; Bre1b rno-miR-20b* 174 211 GUC--UUCACG-------------AGUGU-GACGUCA || :||||| ||||| |||||| GAGCUGAGUGCCAUCUCCUGAAUGUCACAUCUGCAGC Rnf40; Bre1b rno-miR-211 280 312 -UCCGUUUCCU-----ACU---GUUUCCCUU- |||||:| || :||||||:| AAGGCAGAUACAUCCUUGCCCCUAAAGGGGAU Rnf40; Bre1b rno-miR-24 240 264 -GACAA-GGACGACUUGACUCGGU- |||| ||| ||:||| |||| ACUGUAACCUCGGGAGCUG-GCCAG Rnf40; Bre1b rno-miR-27b 251 271 CGUCUUGAAUCGGU---GACACUU :||:| |:|||| |||| -GGGAGC-UGGCCAGACCUGUU-- Rnf40; Bre1b rno-miR-28 41 62 GAGUUAUCUGACAC-----UCGAGGAA :|:||||| |||||| -----GGGGCUGUGCCCCCAGCUCCC- Rnf40; Bre1b rno-miR-290 113 141 UUUUUCACGGGGG----------UAUCAAACUC- |||||: ||:|||||:| ------AGCCCCUCUAUGCCGAGAUGGUUUGGGG Rnf40; Bre1b rno-miR-292-5p 103 141 -GUUUUC---UCGGGGG------------UCAAACUCA || :|| ||||||: :|||||:| CCAUGAGCCCAGCCCCUCUAUGCCGAGAUGGUUUGGGG Rnf40; Bre1b rno-miR-29a 123 152 UUGGCUA----AAGUCU-----ACCACGAU :|||| ||::|: |||||| UGCCGAGAUGGUUUGGGGCCACUGGUGCA- Rnf40; Bre1b rno-miR-30a-3p 254 282 -CGAC--GUUUGU---AGGCUGACUUUC |||| ||:|| |:| |||||:| AGCUGGCCAGACCUGUUUCUACUGAGAA Rnf40; Bre1b rno-miR-324-3p 52 83 -GGUCGUC--GUGGA-----CCCCGUCACC- ||||| |||: |||||| ||| CCCAGCUCCCCACUCCCCCGGGGGCAAUGGC Rnf40; Bre1b rno-miR-324-5p 24 51 -UGU-GGUUAC-GGGAUCCCCUACGC- ||| ||| ||||||||| ||:| AACAUCCAUAUACCCUAGGGGCUGUGC Rnf40; Bre1b rno-miR-327 290 309 -UGGGAGUACGGGGAGUUCC- |:||| ||||||| |||| CAUCCU--UGCCCCUAAAGGG Rnf40; Bre1b rno-miR-328 129 168 -UGCCU--UCCCG--------------UCUCUCCCGGUC- |:|| :|||| :|||||| : :| GAUGGUUUGGGGCCACUGGUGCAUGCAGGAGAGG-UGGGA Rnf40; Bre1b rno-miR-331 37 78 AAGAUCCUA----------UCC----------GGGUCCCCG |||||: || |||:||||| -CCUAGGGGCUGUGCCCCCAGCUCCCCACUCCCCCGGGGGCA Rnf40; Bre1b rno-miR-337 223 261 UUUCCGUAGU-----------AUA------UCCUCGACUU || ||| |:| :|||||||: --CGGGUUCACAACAUCCCACUGUAACCUCGGGAGCUGGC Rnf40; Bre1b rno-miR-338 125 160 AGUUGUUUUA----------GUGACUACGA----CCU- |:|:|| |||||:||| ||| ---CCGAGAUGGUUUGGGGCCACUGGUGCAUGCAGGAG Rnf40; Bre1b rno-miR-343 143 167 AGACC-CGUGUG-CCUC-CCUCU- |||| |||::| |||| || |: ACUGGUGCAUGCAGGAGAGGUGGG Rnf40; Bre1b rno-miR-346 250 291 UCUC-CGUCCG-------------UGAG---UCCGUCUGU |:| || ||| ||| |||||||:| CGGGAGCUGGCCAGACCUGUUUCUACUGAGAAGGCAGAUAC Rnf40; Bre1b rno-miR-349 145 171 UCUCCAA-----UUCUGUCGUCCC-GAC ||| |:|| || ||| || --UGGUGCAUGCAGGAGAGGUGGGACUA Rnf40; Bre1b rno-miR-351 206 228 -GUCCGAGUUUCCC-GAGGAGUCCCU ||| ||| ||| |||| |:|| GCAGCCUCU--GGGACUCC-CGGGU- Rnf40; Bre1b rno-miR-412 129 165 -UGCCGAUCACCUGGU--CCA----------CUUCA- |:||:| ||:||| ||| ||:|| GAUGGUUUG-GGGCCACUGGUGCAUGCAGGAGAGGUG Rnf40; Bre1b rno-miR-422b 91 116 CGGAAGA-CUGAGGU--UCAGGUCA ||||| ||||||| || |||| CCCUUCCAGACUCCAUGAGCCCAGC Rnf40; Bre1b rno-miR-431 132 162 ACGUACUGCCGG---------ACGUUCUGU- |: ||: |||| ||||:|| | GGUUUGG-GGCCACUGGUGCAUGCAGGAGAG Rnf40; Bre1b rno-miR-483 125 161 UGUUCUGCCCU-CCCC--------------UCCUCACU |:|||:|| |||| ||||| CCGAGAUGGUUUGGGGCCACUGGUGCAUGCAGGAGA-- Rnf40; Bre1b rno-miR-485 192 216 -CUUAAGUAGUGCCG--GUCGGAGA- |||| :|||| |||||||| UGAAU--GUCACAUCUGCAGCCUCUG Rnf40; Bre1b rno-miR-541 281 317 ACACUGGU--UGUAG-------------UCUUAGGGAA |:| ||||| :|:|||||| --AGGCAGAUACAUCCUUGCCCCUAAAGGGGAUCCCUC Rnf40; Bre1b rno-miR-542-5p 69 87 -GCA-CUGUACUACUAGGGGCUC || |:|| |||: |||| CCGGGGGCA--AUGG-CCCCA-- Rnf40; Bre1b rno-miR-543 157 185 -UCUUCACG-----UGGCG---CUUACAAA |||:||| |||| ||:|| GAGAGGUGGGACUAACCGAGCUGAGUGC-- Rnf40; Bre1b rno-miR-92 131 153 GUCC-GGCCCUGU---UCACGUUAU || ::|||:| :||||| -UGGUUUGGGGCCACUGGUGCAU-- Rnf40; Bre1b rno-miR-93 1 24 GAUGGACG-UGCUUGUCGUGAAAC- ||||| || | :| |||||| --ACCUGAAACUCAGGGGACUUUGA Rnf40; Bre1b rno-miR-96 154 188 -UCGUUUUUACA----------CGA-UCACGGUUU || |:|::|| ||| ||||||| CAGGAGAGGUGGGACUAACCGAGCUGAGUGCCAU- Rnf40; Bre1b rno-let-7b 194 214 UUGGUGUGUUGGAUGAUGGAGu ||: ||| |:||:| :|||| AATGTCAC-ATCTGCAGCCTCt Rnf40; Bre1b rno-let-7d 192 214 ugaUAC-GU-UGGAUGAUGGAGA ||| || |:||:| :||||| tgaATGTCACATCTGCAGCCTCT Rnf40; Bre1b rno-let-7f 193 214 uUGAUAUGU-UAGAUGAUGGAGu | |:| || ||||:| :|||| gAATGT-CACATCTGCAGCCTCt Rnf40; Bre1b rno-miR-125b 198 218 AGUGUUCAAUCCCAGAGUCCCU |||| | |: | ||| |||| TCAC-ATCTGCAGCCTCTGGGA Rnf40; Bre1b rno-miR-128a 211 246 uuuuCUCU---GG-CCAA----------GUGACAcu |:|| || |||| |||||| ctctGGGACTCCCGGGTTCACAACATCCCACTGTaa Rnf40; Bre1b rno-miR-128b 211 246 cuuuCUCU---GG-CCAA----------GUGACAcu |:|| || |||| |||||| ctctGGGACTCCCGGGTTCACAACATCCCACTGTaa Rnf40; Bre1b rno-miR-133a 149 171 uGU-CGACCAACUUC-CCCUGGUU || || || ||:| |||||:|| gCATGCAGG-AGAGGTGGGACTAA Rnf40; Bre1b rno-miR-133b 127 144 aUCGACCAACUUCCCCUGGUu || ||||| |||:||| gAGATGGTT---TGGGGCCAc Rnf40; Bre1b rno-miR-133b 151 171 auCGACCAACUUC-CCCUGGUU || || ||:| |||||:|| atGCAGG-AGAGGTGGGACTAA Rnf40; Bre1b rno-miR-145 239 261 uucccuaaGGACCCUUUUGACCug ||| || :|:|||| cactgtaaCCTCGG-GAGCTGGcc Rnf40; Bre1b rno-miR-146 208 232 UUGGGUACCUUAAG---UCAAGAGU |:||: |||:| || :|||| || AGCCTCTGGGACTCCCGGGTTCACA Rnf40; Bre1b rno-miR-150 142 169 GUGACCAUGU---UCC---CAACCCUcu |||||||:|| ||| | ||||| CACTGGTGCATGCAGGAGAGGTGGGAct Rnf40; Bre1b rno-miR-151* 36 64 auGAU--CUGACAC-----UCGAGGAGcu ||| |:||||| |||||| | ccCTAGGGGCTGTGCCCCCAGCTCCCCac Rnf40; Bre1b rno-miR-181a 167 199 UGAGUGGCU-GUCGCA---------ACUUACAa ||| ||||| | | || ||||||| ACTAACCGAGCTGAGTGCCATCTCCTGAATGTc Rnf40; Bre1b rno-miR-181c 167 199 UGAGUGGCU-GUC-CA---------ACUUACAa ||| ||||| | | || ||||||| ACTAACCGAGCTGAGTGCCATCTCCTGAATGTc Rnf40; Bre1b rno-miR-183 160 188 guCACUUAAGAUGG------UCACGGUAu |||:: : ||| |||||||| agGTGGGACTAACCGAGCTGAGTGCCATc Rnf40; Bre1b rno-miR-184 297 318 uGGGAAUAGUCAAGAGGCAGGU ||| || :| ||| |||| gCCCCTAAAGGGGATCCCTCCA Rnf40; Bre1b rno-miR-193 248 265 GA-CCCUGAAACAUCCGGUCaa || |||| | |||||| CTCGGGA----GCTGGCCAGac Rnf40; Bre1b rno-miR-199a 124 148 cuugUCCAUCAGA--CUUGUGACCc || |:||:| |: |||||| gccgAGATGGTTTGGGGCCACTGGt Rnf40; Bre1b rno-miR-205 138 158 guCUGAGGCCACCUUACUUCCU | | |:||| | ||| |||| ggGCCACTGGT-GCATGCAGGA Rnf40; Bre1b rno-miR-20b* 191 210 GUCUUCACGAGUGU-GACGUCa | ||| || ||||| |||||| CTGAA-TG-TCACATCTGCAGc Rnf40; Bre1b rno-miR-211 281 310 UCCGUUU-CCU----ACUG---UUUCCCUU |||||:| | || | ||||||:| AGGCAGATACATCCTTGCCCCTAAAGGGGA Rnf40; Bre1b rno-miR-24 241 262 GACA-AGGACGACUUGACUCGGU |||| ||| ||:||| |||| CTGTAACCTCGGGAGCTG-GCCA Rnf40; Bre1b rno-miR-27b 260 281 cGUCUUGA-AUCGGUGACACUU |||| || | |:|||| ||| cCAGACCTGTTTCTACTGAGAA Rnf40; Bre1b rno-miR-28 36 62 GAGUUAUCUGACAC-----UCGAGGaa | | | :|:||||| |||||| CCCTAGGGGCTGTGCCCCCAGCTCCcc Rnf40; Bre1b rno-miR-290 117 139 uuuuucACGGGGGUAUCAAACUC |||| ||:|||||:| cctctaTGCCGAGATGGTTTGGG Rnf40; Bre1b rno-miR-292-5p 104 140 GUUUUC---UCGGGG------------GUCAAACUCa || :|| |||||| ::|||||:| CATGAGCCCAGCCCCTCTATGCCGAGATGGTTTGGGg Rnf40; Bre1b rno-miR-29a 128 152 UUGGCUAAAGUCU----ACCACGau |: :|:||| :|: |||||| AGATGGTTTGGGGCCACTGGTGCat Rnf40; Bre1b rno-miR-30a-3p 255 281 CGAC--GUUUG---UAGGCUGACUUUc |||| ||:|| |:| |||||:| GCTGGCCAGACCTGTTTCTACTGAGAa Rnf40; Bre1b rno-miR-324-3p 61 81 GGUCGUCGUGGACCCCGUCACC ||| | | || |||||| ||| CCA-CTCCCCCGGGGGCAATGG Rnf40; Bre1b rno-miR-324-5p 25 49 UGU-GGU-UACGGGAUCCCCUACGC ||| ||| || ||||||||| ||:| ACATCCATATACCCTAGGGGCTGTG Rnf40; Bre1b rno-miR-327 291 307 UGGGAGUACGGGGAGUUCC |:||| ||||||| |||| ATCCT--TGCCCCTAAAGG Rnf40; Bre1b rno-miR-328 125 144 uGCCUUCCCGUCUCUCCCGGUc || :| ||: :|||||| cCGAGATGGT--TTGGGGCCAc Rnf40; Bre1b rno-miR-328 158 187 ugcCUUCCC-----GUCU---CUCCCGGUc |: ||| | || ||| |||| agaGGTGGGACTAACCGAGCTGAGTGCCAt Rnf40; Bre1b rno-miR-331 56 76 aagauccuauccGGGUCCCCG |||:||||| gctccccactccCCCGGGGGC Rnf40; Bre1b rno-miR-331 26 45 aagauccUAUCCGGGUCCCCG ||| ||:|||||| catccatATA-CCCTAGGGGC Rnf40; Bre1b rno-miR-337 158 181 UUUCCGUAGU-AUAUCCUCGACUu |:|||:: | || ||||||| AGAGGTGGGACTAACCGAGCTGAg Rnf40; Bre1b rno-miR-337 239 260 uuucCGUAGUAUAUCCUCGACuu |:| | | :||||||| cactGTAACCT-CGGGAGCTGgc Rnf40; Bre1b rno-miR-338 132 158 aguuguuuuaGUGAC----UACGACCU ||||| |||| ||| ggtttggggcCACTGGTGCATGCAGGA Rnf40; Bre1b rno-miR-343 143 167 aGACC-CGU--GUGC-CUCC-CUCU |||| ||| || | |||| |:|| aCTGGTGCATGCAGGAGAGGTGGGA Rnf40; Bre1b rno-miR-349 158 179 UCUCCAAUUCUG-UCGUCCCGAC ||||| |::||| | | | |||| AGAGG-TGGGACTAACCGAGCTG Rnf40; Bre1b rno-miR-351 195 218 guCCGAGUUUCCCGAGGAGUCCCU | | || | |||| |||| atGTCACATCTGCAGCCTCTGGGA Rnf40; Bre1b rno-miR-351 223 255 GUCCGAGU-UUCCCG------A--GGAGUCCcu |:||:||| || | | ||||:|| CGGGTTCACAACATCCCACTGTAACCTCGGGag Rnf40; Bre1b rno-miR-412 140 163 ugccGAUCACCUG-GUCCACUUCA ||:||| |: |||| ||:|| gccaCTGGTGCATGCAGGAGAGGT Rnf40; Bre1b rno-miR-431 140 160 acGU-ACUGCCGGACGUUCUgu || ||:: || ||||:|| gcCACTGGT-GCATGCAGGAga Rnf40; Bre1b rno-miR-483 153 184 uGUUCUGCCCUCCC-------CUC--CUCACu ||:|| || ||| ||| ||||| gCAGGAGAGGTGGGACTAACCGAGCTGAGTGc Rnf40; Bre1b rno-miR-485 193 214 CUUA-AGUAGU-GCCGGUCGGAGA |||| ||| || | | |||||||| GAATGTCA-CATCTG-CAGCCTCT Rnf40; Bre1b rno-miR-541 294 316 acACUGGUUGUAGUCUUAGGGAa || || | :|:|||||| ctTGCCCCTAAAGGGGATCCCTc Rnf40; Bre1b rno-miR-542-5p 53 73 gcacuguacuacuaGGGGCUC |||||:| ccagctccccactcCCCCGGG Rnf40; Bre1b rno-miR-543 177 200 ucuUCAC-GUGGCG--CUUACAaa |||| ||:| | |||||| ctgAGTGCCATCTCCTGAATGTca Rnf40; Bre1b rno-miR-92 137 154 guCCGGCCCUGUUCACGUuau |||| || :||||| ggGGCC---ACTGGTGCAtgc Rnf40; Bre1b rno-miR-96 165 188 ucguuUUUACACGA-UCACGGUuu || | ||| ||||||| ggactAACCGAGCTGAGTGCCAtc Rnf40; Bre1b rno-miR-181a 192 199 ----------UGAGUGGCUG---UCGCA-------ACUUACAA ||| ||||| ||:| ||||||| GAGAGGUGGGACUAACCGAGCUGAGUGCCAUCUCCUGAAUGUC Rnf40; Bre1b rno-miR-181c 192 199 ----------UGAGUGGCU-GUC-CA---------ACUUACAA ||| ||||| | | || ||||||| GAGAGGUGGGACUAACCGAGCUGAGUGCCAUCUCCUGAAUGUC Rnf40; Bre1b rno-miR-183 181 188 G--------------UCACUUAAGAU-GG------UCACGGUAU :|||:: ||| || |||||||| GGUGCAUGCAGGAGAGGUGGGA-CUAACCGAGCUGAGUGCCAUC Rnf40; Bre1b rno-miR-337 174 181 -------------------UUUCCGUAGUAUAUC-CUCGACUU |:|||:: |||||||: GGCCACUGGUGCAUGCAGGAGAGGUGGGACUAACCGAGCUGAGU Rnf40; Bre1b rno-miR-485 207 214 ---------------------CUUAAGUAGUGCCG--GUCGGAGA |||| :|||| |||||||| CCGAGCUGAGUGCCAUCUCCUGAAU--GUCACAUCUGCAGCCUCUG

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Rnf40 RAID00023138 rno-miR-183-5p miRNA MIMAT0000860 Rnf40 mRNA 266712 Prediction 0.1828 Rnf40 RAID00158240 rno-miR-181b-5p miRNA MIMAT0000859 Rnf40 mRNA 266712 Prediction 0.1828 Rnf40 RAID00285085 rno-miR-181c-5p miRNA MIMAT0000857 Rnf40 mRNA 266712 Prediction 0.1828 Rnf40 RAID00948357 rno-miR-497-3p miRNA MIMAT0017230 Rnf40 mRNA 266712 Prediction 0.1828 Rnf40 RAID00979120 rno-miR-125b-5p miRNA MIMAT0000830 Rnf40 mRNA 266712 Prediction 0.1828 Rnf40 RAID00999945 rno-miR-212-3p miRNA MIMAT0000883 Rnf40 mRNA 266712 Prediction 0.1828 Rnf40 RAID01482953 rno-miR-194-3p miRNA MIMAT0017148 Rnf40 mRNA 266712 Prediction 0.1828 Rnf40 RAID01871156 rno-miR-181a-5p miRNA MIMAT0000858 Rnf40 mRNA 266712 Prediction 0.1828 Rnf40 RAID02181417 rno-miR-181d-5p miRNA MIMAT0005299 Rnf40 mRNA 266712 Prediction 0.1828 Rnf40 RAID02290311 rno-miR-351-5p miRNA MIMAT0000608 Rnf40 mRNA 266712 Prediction 0.1828 Rnf40 RAID03172408 rno-miR-666-3p miRNA MIMAT0017371 Rnf40 mRNA 266712 Prediction 0.1828 Rnf40 RAID03776238 rno-miR-125a-5p miRNA MIMAT0000829 Rnf40 mRNA 266712 Prediction 0.1828 Rnf40 RAID03819167 rno-miR-485-5p miRNA MIMAT0003203 Rnf40 mRNA 266712 Prediction 0.2202