DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000568 rno-miR-330* 114590 Ubqln1 agAGACGUCC-GGGACAC-GAAACg | |||:|| ::||||| ||||| gaUGUGCGGGUUUCUGUGUCUUUGg 2 22 143 167 [rn4:17:12418651-12418675:+] 0.6604 140 0 -26.00 -0.7994 MIMAT0000568 rno-miR-330* 114590 Ubqln1 agAGACGUCC-GGGACACGA-AACg || ::|| ::||||||| ||| uuUCAUUGGGAUUCUGUGCUGUUGu 2 22 76 100 [rn4:17:12418584-12418608:+] 0.6604 128 0 -20.32 -0.8632 MIMAT0000568 rno-miR-330* 114590 Ubqln1 agagacguccgggacACGAAAcg |||||| aucuuuaaaauaaccUGCUUUau 3 9 54 76 [rn4:17:12418562-12418584:+] 0.6604 120 0 -9.09 -0.1085 MIMAT0000601 rno-miR-129* 114590 Ubqln1 uacGAAAAACCCCAUUCCCGAa :| ||| | ||| |||| aauUUAUUUUUGAUAACGGCUc 2 20 28 49 [rn4:17:12418536-12418557:+] 0.7271 127 0 -8.48 -0.2432 MIMAT0000607 rno-miR-7a* 114590 Ubqln1 uaccgUCUG-ACACUAAACAACa | || || |||||||| gucaaACACUUGGCAUUUGUUGu 2 18 209 231 [rn4:17:12418717-12418739:+] 0.6604 152 7 -12.20 -1.0818 MIMAT0004708 rno-miR-9* 114590 Ubqln1 ugaaagccaauagauCGAAAUa |||||| ucuuuaaaauaaccuGCUUUAu 2 8 55 76 [rn4:17:12418563-12418584:+] 0.6604 120 6 -9.12 -0.1324 MIMAT0004711 rno-miR-21* 114590 Ubqln1 cugucgggUAGCUGACGACAAc ||: ||||||| ucauugggAUUCUGUGCUGUUg 2 15 78 99 [rn4:17:12418586-12418607:+] 0.6604 142 7 -17.37 -0.6398 MIMAT0004717 rno-miR-29b-2* 114590 Ubqln1 gauuCGGUGGUACACUUUGGUc |:::: | | ||||||| ugcuGUUGUAAAG-GAAACCAa 2 19 92 112 [rn4:17:12418600-12418620:+] 0.6604 144 7 -12.12 -0.8665 MIMAT0004720 rno-miR-30e* 114590 Ubqln1 cgacauuuguaggcuGACUUUc |||||| cagcauuucuguaucCUGAAAa 2 8 1 22 [rn4:17:12418509-12418530:+] 0.7938 120 6 -9.79 -0.6059 MIMAT0004722 rno-miR-30d* 114590 Ubqln1 cgucguuuguagacuGACUUUc |||||| cagcauuucuguaucCUGAAAa 2 8 1 22 [rn4:17:12418509-12418530:+] 0.7938 120 6 -15.95 -0.6059 MIMAT0000809 rno-miR-30a* 114590 Ubqln1 cgacguuuguaggcuGACUUUc |||||| cagcauuucuguaucCUGAAAa 2 8 1 22 [rn4:17:12418509-12418530:+] 0.7938 120 6 -11.79 -0.6059 MIMAT0004726 rno-miR-101a* 114590 Ubqln1 cguagucguGACACUAUUGACu :| ||||||| | guaauuuauUUUUGAUAACGGc 2 14 26 47 [rn4:17:12418534-12418555:+] 0.7271 121 0 -9.50 -0.1263 MIMAT0004728 rno-miR-124* 114590 Ubqln1 uaguuccaggcgaCACUUGUGc |||||||| cuuuucuaauuggGUGAACACa 2 10 249 270 [rn4:17:12418757-12418778:+] 0.6604 145 7 -13.64 -0.9815 MIMAT0004730 rno-miR-125b-3p 114590 Ubqln1 ucgaggguucucggAUUGGGCa |||||:| uuaaaucuuuaaaaUAACCUGc 2 9 50 71 [rn4:17:12418558-12418579:+] 0.6604 124 0 -13.09 -0.1588 MIMAT0000847 rno-miR-142-5p 114590 Ubqln1 ucaucacgaaaGAUGAAAUAc ||:|||||| uuuaaaauaacCUGCUUUAUu 2 11 57 77 [rn4:17:12418565-12418585:+] 0.6604 134 6 -8.16 -0.1391 MIMAT0000894 rno-miR-291a-5p 114590 Ubqln1 ucucucccggAGGU-GAAACUAc |::| :|||||| aaaaauguaaUUUAUUUUUGAUa 2 13 20 42 [rn4:17:12418528-12418550:+] 0.7271 127 6 -6.48 -0.4929 MIMAT0003124 rno-miR-412 114590 Ubqln1 ugccgaucaccUGGUCCACUUca |:::|||||| caccuuuucuaAUUGGGUGAAca 3 13 246 268 [rn4:17:12418754-12418776:+] 0.6604 128 0 -9.77 -0.1490 MIMAT0005279 rno-miR-466c 114590 Ubqln1 guACAU--GUACGUGUGUAGUGu |||| | | :| ||||||| guUGUAAUCUUUUAAACAUCACc 2 20 227 249 [rn4:17:12418735-12418757:+] 0.6604 154 7 -10.73 -1.2435 MIMAT0005280 rno-miR-743b 114590 Ubqln1 agAUAAG-UCAUA-CCACAGAAAg |:| | :|| | |||||||| gaUGUGCGGGUUUCUGUGUCUUUg 2 21 143 166 [rn4:17:12418651-12418674:+] 0.6604 150 7 -12.70 -0.3917 MIMAT0005282 rno-miR-872 114590 Ubqln1 ggACUU-GAUUGUUCAUUGGAa | || || || |||||| cuUAAAUCUUUAAAAUAACCUg 2 20 49 70 [rn4:17:12418557-12418578:+] 0.6604 122 6 -8.08 -0.2977 MIMAT0005322 rno-miR-532-5p 114590 Ubqln1 ugucaggAUGUGAGUUCCGUAc || | | ||||||| auuuaugUAGAAUAAAGGCAUu 2 16 328 349 [rn4:17:12418836-12418857:+] 0.6604 151 7 -9.28 -1.3185 MIMAT0005324 rno-miR-598-5p 114590 Ubqln1 gagcgugguagccGUAGUGGcg ||||||| guaaucuuuuaaaCAUCACCuu 3 10 230 251 [rn4:17:12418738-12418759:+] 0.6604 125 0 -12.14 -0.1313 MIMAT0012829 rno-miR-511 114590 Ubqln1 acucACGUCUCGUUUUCCGUa ||:||| : ||||||| uuuaUGUAGAAU-AAAGGCAu 2 18 329 348 [rn4:17:12418837-12418856:+] 0.6604 155 7 -17.37 -1.2433 MIMAT0012848 rno-miR-294 114590 Ubqln1 ucuaucccggagguAAAACUc |||||| aaaauguaauuuauUUUUGAu 2 8 21 41 [rn4:17:12418529-12418549:+] 0.7271 120 6 -5.26 -0.2927 MIMAT0012853 rno-miR-761 114590 Ubqln1 acacagucaaaGUGGGACGAcg :| |||||| aaucuuuaaaaUAACCUGCUuu 3 12 53 74 [rn4:17:12418561-12418582:+] 0.6604 123 0 -10.54 -0.3038 MIMAT0000575 rno-miR-335 114590 Ubqln1 ugUAAAAAGCAAUAACGAGAAcu |||||| | | |||||| uuAUUUUUGAUAACGGCUCUUaa 3 22 31 53 [rn4:17:12418539-12418561:+] 0.6604 145 0 -10.47 -0.3468 MIMAT0000579 rno-miR-148b-3p 114590 Ubqln1 ugUUUCAAGACACUACGU-GACu | | ||:||| |||| ||| acACAUUUUUGUCCUGCAUCUGu 2 21 266 288 [rn4:17:12418774-12418796:+] 0.6604 128 0 -14.16 -0.7700 MIMAT0004650 rno-miR-340-5p 114590 Ubqln1 uuaGUC-AGAGUAACGAAAUAUu |:| |||:| ||||| | uaaCGGCUCUUAAAUCUUUAAAa 2 20 41 63 [rn4:17:12418549-12418571:+] 0.6604 122 0 -10.21 -0.2010 MIMAT0000611 rno-miR-135b 114590 Ubqln1 agUGUAUCCUUACUUUUCGGUAu |::|| |||| |||| ||| uuAUGUA-GAAU--AAAGGCAUu 2 22 330 349 [rn4:17:12418838-12418857:+] 0.6604 128 0 -9.18 -0.1304 MIMAT0000787 rno-miR-18a 114590 Ubqln1 gauagacgugaucuacGUGGAAu |||||| guaaucuuuuaaacauCACCUUu 2 8 230 252 [rn4:17:12418738-12418760:+] 0.6604 120 6 -10.19 -0.1607 MIMAT0004729 rno-miR-125a-3p 114590 Ubqln1 ccGAGGGUUCUUGGAGUGGAca ||:::| ||| |||||| auCUUUUA--AACAUCACCUuu 3 21 233 252 [rn4:17:12418741-12418760:+] 0.6604 137 0 -13.42 -0.1297 MIMAT0000841 rno-miR-135a 114590 Ubqln1 agUGUAUCCUUAUU-UUUCGGUAu |: || | | || |||| ||| uaAUUUAUGUAGAAUAAAGGCAUu 2 22 326 349 [rn4:17:12418834-12418857:+] 0.6604 128 0 -9.40 -0.1304 MIMAT0000854 rno-miR-152 114590 Ubqln1 gguUCAAGACAGUACGU-GACu | ||:|||| |||| ||| cacAUUUUUGUCCUGCAUCUGu 2 19 267 288 [rn4:17:12418775-12418796:+] 0.6604 134 0 -17.28 -0.7700 MIMAT0000856 rno-miR-154 114590 Ubqln1 gcuuccguugugccUAUUGGAu ||||||| cuuaaaucuuuaaaAUAACCUg 2 9 49 70 [rn4:17:12418557-12418578:+] 0.6604 140 7 -9.27 -1.2295 MIMAT0000876 rno-miR-203 114590 Ubqln1 gaucaccaggauUUGUAAAGug |:|||||| -----------cAGCAUUUCug 3 11 1 11 [rn4:17:12418509-12418519:+] 0.7938 126 0 -6.56 -0.1590 MIMAT0000878 rno-miR-205 114590 Ubqln1 gucUGAGGCCACCUUACUUCCu |:|: || |||| |||| guaAUUUAUGUAGAAUAAAGGc 2 20 325 346 [rn4:17:12418833-12418854:+] 0.6604 131 0 -9.98 -0.1004 MIMAT0000885 rno-miR-214 114590 Ubqln1 gacggacagacacGGACGAca |||||| aucuuuaaaauaaCCUGCUuu 3 9 54 74 [rn4:17:12418562-12418582:+] 0.6604 120 0 -9.66 -0.3090 MIMAT0000890 rno-miR-221 114590 Ubqln1 cuuuggGUCGUCUGUUACAUCga :||:| : |||||| cucuggUAGUAAUUUAUGUAGaa 3 18 317 339 [rn4:17:12418825-12418847:+] 0.6604 129 0 -15.55 -0.4238 MIMAT0000891 rno-miR-222 114590 Ubqln1 ugGGUCAUCGGU--CUACAUCga |::||||: | |||||| cuCUGGUAGUAAUUUAUGUAGaa 3 20 317 339 [rn4:17:12418825-12418847:+] 0.6604 134 0 -17.05 -0.4206 MIMAT0001549 rno-miR-365 114590 Ubqln1 uauuccuaaaaauccCCGUAAu |||||| uuuauguagaauaaaGGCAUUa 2 8 329 350 [rn4:17:12418837-12418858:+] 0.6604 120 6 -8.82 -0.6361 MIMAT0001633 rno-miR-451 114590 Ubqln1 uuGAGUCAUUACCAUUGCCAAa :|:| | || |||||| | aaUUUAUUUUUGAUAACGGCUc 2 21 28 49 [rn4:17:12418536-12418557:+] 0.7271 128 0 -11.30 -0.2913 MIMAT0003176 rno-miR-539 114590 Ubqln1 ugugugguuccuauUAAAGAgg |||||| ----------cagcAUUUCUgu 3 9 1 12 [rn4:17:12418509-12418520:+] 0.7938 120 0 -3.67 -0.2146

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G043026 Ubqln1 Rattus norvegicus 114590

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Ubqln1 RAID00068708 rno-miR-125a-3p miRNA MIMAT0004729 Ubqln1 mRNA 114590 Prediction 0.1828 Ubqln1 RAID00323149 rno-miR-203a-3p miRNA MIMAT0000876 Ubqln1 mRNA 114590 Prediction 0.1828 Ubqln1 RAID00421866 rno-miR-222-3p miRNA MIMAT0000891 Ubqln1 mRNA 114590 Prediction 0.1828 Ubqln1 RAID00623508 rno-miR-365-3p miRNA MIMAT0001549 Ubqln1 mRNA 114590 Prediction 0.1828 Ubqln1 RAID00696316 rno-miR-21-3p miRNA MIMAT0004711 Ubqln1 mRNA 114590 Prediction 0.1828 Ubqln1 RAID00762060 rno-miR-340-5p miRNA MIMAT0004650 Ubqln1 mRNA 114590 Prediction 0.1828 Ubqln1 RAID01365971 rno-miR-205 miRNA MIMAT0000878 Ubqln1 mRNA 114590 Prediction 0.1828 Ubqln1 RAID01373483 rno-miR-214-3p miRNA MIMAT0000885 Ubqln1 mRNA 114590 Prediction 0.1828 Ubqln1 RAID01485809 rno-miR-221-3p miRNA MIMAT0000890 Ubqln1 mRNA 114590 Prediction 0.1828 Ubqln1 RAID01739659 rno-miR-18a-5p miRNA MIMAT0000787 Ubqln1 mRNA 114590 Prediction 0.1828 Ubqln1 RAID02118759 rno-miR-466c-5p miRNA MIMAT0005279 Ubqln1 mRNA 114590 Prediction 0.1828 Ubqln1 RAID02155963 rno-miR-135a-5p miRNA MIMAT0000841 Ubqln1 mRNA 114590 Prediction 0.1828 Ubqln1 RAID02808765 rno-miR-335 miRNA MIMAT0000575 Ubqln1 mRNA 114590 Prediction 0.1828 Ubqln1 RAID02906321 rno-miR-539-5p miRNA MIMAT0003176 Ubqln1 mRNA 114590 Prediction 0.1828 Ubqln1 RAID03016018 rno-miR-154-5p miRNA MIMAT0000856 Ubqln1 mRNA 114590 Prediction 0.1828 Ubqln1 RAID03296008 rno-miR-148b-3p miRNA MIMAT0000579 Ubqln1 mRNA 114590 Prediction 0.1828 Ubqln1 RAID03372798 rno-miR-152-3p miRNA MIMAT0000854 Ubqln1 mRNA 114590 Prediction 0.1828 Ubqln1 RAID04001723 rno-miR-451-5p miRNA MIMAT0001633 Ubqln1 mRNA 114590 Prediction 0.1828 Ubqln1 RAID04042477 rno-miR-135b-5p miRNA MIMAT0000611 Ubqln1 mRNA 114590 Prediction 0.1828