DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Wdr3; Wdr3_predicted; rCG_52071 rno-let-7a 9 33 UUGAUAUGUU---GGAUGAUGGAGU :|||||: |||:|| :||| UGCUAUAUCUUUUCCUGCU-UCUCU Wdr3; Wdr3_predicted; rCG_52071 rno-let-7e 9 31 -UGAUAUGUUGGAGGAUGGAGU :|||||: ::||||:|:|| UGCUAUAUCUUUUCCUGCUUCU Wdr3; Wdr3_predicted; rCG_52071 rno-let-7f 9 31 UUGAUAUGUUAGAUGAUGGAGU :|||||: |:| ||:|:|| UGCUAUAUCUUUUCCUGCUUCU Wdr3; Wdr3_predicted; rCG_52071 rno-miR-107 424 459 -ACUA-UCGGG---ACAUG------UUACGACGA- || ||:|: |||| :||||||:| UUGUUGAGUCUGCAUGUAAGAUCAUGAUGCUGUUU Wdr3; Wdr3_predicted; rCG_52071 rno-miR-124a 323 344 ACCGUAAGUG--GCGCACGGAAUU |||||| :|:|||:||| --CCAUUCAGCAUGUGUGUCUUU- Wdr3; Wdr3_predicted; rCG_52071 rno-miR-132 357 380 GC-UGGUACC-GACA-UCUGACAAU | |:||||| |||| :|:||| AGAAUCAUGGACUGUGGGGCUGG-- Wdr3; Wdr3_predicted; rCG_52071 rno-miR-139 356 376 -UCUGUGCACGUGACAUCU- ||| || |||||:|: AAGAAUCAUGGACUGUGGGG Wdr3; Wdr3_predicted; rCG_52071 rno-miR-140* 367 402 ACAGGCACCAAGA--------------UG-GGACACCAU |:|||| || |: |||| || --ACUGUGGGGCUGGAGGGAUGAUGGGAUGCCUG-GGG- Wdr3; Wdr3_predicted; rCG_52071 rno-miR-145 378 407 -UUCCCUAA--------GGACCCUUUUGACCUG :|||||| ||||||:||:| GGAGGGAUGAUGGGAUGCCUGGGGAAGCC---- Wdr3; Wdr3_predicted; rCG_52071 rno-miR-146 134 159 -UUGGGU---ACCUUAAGUCAAGAGU |||||| ||| | |||||| AAACCCAACAUGGCUGUGAGUUCUG- Wdr3; Wdr3_predicted; rCG_52071 rno-miR-15b 437 459 -ACA-UUUGGUACUACACGACGAU ||| |:|:||||| |||||:| AUGUAAGAUCAUGA--UGCUGUUU Wdr3; Wdr3_predicted; rCG_52071 rno-miR-193 364 381 GACCCUGAAACAUCCGGUCAA ||||| :|||::| --UGGACUGUG-GGGCUGGA- Wdr3; Wdr3_predicted; rCG_52071 rno-miR-194 431 464 -AGGUGUACCU-------CAACGACA---AUGU ||::|||| | |||||| ||| GUCUGCAUGUAAGAUCAUGAUGCUGUUUGUACU Wdr3; Wdr3_predicted; rCG_52071 rno-miR-205 364 394 GUCUGAGGCCA------CCUUACU-UCCU- :|||| :|| ||:|||| :||| UGGACUGUGGGGCUGGAGGGAUGAUGGGAU Wdr3; Wdr3_predicted; rCG_52071 rno-miR-207 378 407 -UUCCCUC---CUCU-CGGUCCUCUUCG- :||||| |:|| ||| ||:||||| GGAGGGAUGAUGGGAUGCCUGGGGAAGCC Wdr3; Wdr3_predicted; rCG_52071 rno-miR-20b* 36 61 GUCUUCACGAGUG----UGACGUCA ||:|| |:|||| ||||::| AAGGAGCGUUCACAUAAACUGUGGG Wdr3; Wdr3_predicted; rCG_52071 rno-miR-214 392 429 GACGGACAGACA--CGGA---------------CGACA- |||||| | |||| |:||| AUGCCUGG--GGAAGCCUCCUUACACCAUGCAGGUUGUU Wdr3; Wdr3_predicted; rCG_52071 rno-miR-217 425 458 -UAGGUCAGU----CA----AGGACUACGUCAU :|: |||| || || |||||| || UGUUGAGUCUGCAUGUAAGAUCAUGAUGCUGUU Wdr3; Wdr3_predicted; rCG_52071 rno-miR-22* 113 137 -UUUCGAACGG---UGACUUCUUGA :|||: ||| :|||||||| AGAAGUCAGCCUUGGCUGAAGAAA- Wdr3; Wdr3_predicted; rCG_52071 rno-miR-27a 37 61 CGCCUUGAAUCGG----UGACACUU |||:| ||||||: -AGGAGCGUUCACAUAAACUGUGGG Wdr3; Wdr3_predicted; rCG_52071 rno-miR-28 138 159 GAGUUAU-CUGACACUCGAGGAA ||| |:|||||||:||: -CCAACAUGGCUGUGAGUUCUG- Wdr3; Wdr3_predicted; rCG_52071 rno-miR-296 386 409 -UGUCCUAACU-CCCCCCCGGGA |::|||| |||| |||: GAUGGGAUGCCUGGGGAAGCCUC Wdr3; Wdr3_predicted; rCG_52071 rno-miR-322 92 112 -ACAACGUCGCGAAGUACAAA |||||:|| ||| : || AUGUUGUAGAUCUUGGGGUA- Wdr3; Wdr3_predicted; rCG_52071 rno-miR-324-5p 390 407 UGUGGUUACGGGAUCCCCUACGC :|||||: ||||| || ----GGAUGCCU--GGGGAAGCC Wdr3; Wdr3_predicted; rCG_52071 rno-miR-326 374 403 -UGACCUCCUU----CCCG--GGUCUCC- :|||||||:| ||| || |:|| GGCUGGAGGGAUGAUGGGAUGCCUGGGGA Wdr3; Wdr3_predicted; rCG_52071 rno-miR-328 362 392 -UGCCU----UCCCGUCUCUCCCG---GUC- |:||| :|||| | ||||| ::| CAUGGACUGUGGGGCUG-GAGGGAUGAUGGG Wdr3; Wdr3_predicted; rCG_52071 rno-miR-336 364 389 -UCUGA--UCUAUACCUUCCCACU- :|||| :|: ||||:|| ||| UGGACUGUGGGGCUGGAGGGAUGAU Wdr3; Wdr3_predicted; rCG_52071 rno-miR-337 350 382 -UUUCCG---UAGUAUAU----CCUCGACUU- ||||| |||||: ||:||||:| UAAAGGAAGAAUCAUGGACUGUGGGGCUGGAG Wdr3; Wdr3_predicted; rCG_52071 rno-miR-338 360 382 -AGUUGUUUUAGUGACUACGACCU- ||| :| | || |||||| AUCAUGGA---CUGUGGGGCUGGAG Wdr3; Wdr3_predicted; rCG_52071 rno-miR-343 367 389 AGAC-CCGUGUGCCUCCCU-CU- ||| || :| :||||||| || ACUGUGGGGC-UGGAGGGAUGAU Wdr3; Wdr3_predicted; rCG_52071 rno-miR-347 370 387 -ACCCGCUGGGUCUCCCUGU |||| |::||||||: GUGGGG---CUGGAGGGAUG Wdr3; Wdr3_predicted; rCG_52071 rno-miR-349 356 380 -UCUCCAAUUCUGUCGUCCCGAC- ||| :||| |::|||||| AAGAAUCAUGGACUGUGGGGCUGG Wdr3; Wdr3_predicted; rCG_52071 rno-miR-370 393 426 UUGGUCCAA---GGUGG-----GGU-CGUCCG- :|| || || || ||| |||||: UGCCUGGGGAAGCCUCCUUACACCAUGCAGGUU Wdr3; Wdr3_predicted; rCG_52071 rno-miR-409-3p 37 68 -CC-C-CAAGUG--------GCUCGUUGUAA || | |||||| :|:||||||| AGGAGCGUUCACAUAAACUGUGGGCAACAUC Wdr3; Wdr3_predicted; rCG_52071 rno-miR-409-5p 388 409 GUUUCAAC-GAGCCCAUUGGA- ::| || || ||| |:||| -UGGGAUGCCUGGGGAAGCCUC Wdr3; Wdr3_predicted; rCG_52071 rno-miR-412 373 406 UGCCGAUC--------ACC---UGGUCCACUUCA ||||:| ||| :|| || |||| -GGGCUGGAGGGAUGAUGGGAUGCCUGGGGAAGC Wdr3; Wdr3_predicted; rCG_52071 rno-miR-433 411 453 -UGUGG---------CUCCUCGGG---------UAGUACUA ||||| | |||:|: |||||||| UACACCAUGCAGGUUGUUGAGUCUGCAUGUAAGAUCAUGAUG Wdr3; Wdr3_predicted; rCG_52071 rno-miR-483 371 404 UGUUCUGCCCUCCC--------------CUCCUCACU ::|:| |||||| |:||| -UGGGGCUGGAGGGAUGAUGGGAUGCCUGGGGAA--- Wdr3; Wdr3_predicted; rCG_52071 rno-miR-485 389 410 -CUUAAGUAGUGCCGGUCGGAGA |:|| | || |||||| GGGAUGC--CUGGGGAAGCCUCC Wdr3; Wdr3_predicted; rCG_52071 rno-miR-493 200 226 GACCGUGU---GUC---AUCUGGAAGU- |:|: ||| |:||||||:| --UGUAUUUUUCAGAGUUGGACCUUUAA Wdr3; Wdr3_predicted; rCG_52071 rno-miR-505 399 432 -CCUUUGGU-----------CGUUC-ACAACUG ||||:|| |||:| |||||| GGGAAGCCUCCUUACACCAUGCAGGUUGUUGAG Wdr3; Wdr3_predicted; rCG_52071 rno-miR-541 54 80 -ACACUGGUUGUAGUCUUAG---GGAA ||||: ||||||| || CUGUGGGCAACAUCUUAAAAAUACCG- Wdr3; Wdr3_predicted; rCG_52071 rno-miR-7 138 167 UUGUUUUAGUGAU--------CAGAAGGU- ||| || :||: |||||||| -CCAACAUGGCUGUGAGUUCUGUCUUCCAU Wdr3; Wdr3_predicted; rCG_52071 rno-miR-7* 293 312 -AUACCGUCUGACACUAAACAAC |||||||||:| |||||| UUAUGGCAGAUU---AUUUGUA- Wdr3; Wdr3_predicted; rCG_52071 rno-miR-7b 144 167 -UUGU--UUUAGUGUUCAGAAGGU- ::| :|:|: |||||||| UGGCUGUGAGUUCU--GUCUUCCAU Wdr3; Wdr3_predicted; rCG_52071 rno-let-7e 10 30 uGAUAUGUUGGAGGAUGGAGu |||||: ::||||:|:|| gCTATATCTTTTCCTGCTTCt Wdr3; Wdr3_predicted; rCG_52071 rno-miR-107 425 457 ACUA-UCGG--G-ACAU----GU--UACGACGA || | ||:| | |||| || ||||||:| TGTTGAGTCTGCATGTAAGATCATGATGCTGTT Wdr3; Wdr3_predicted; rCG_52071 rno-miR-124a 321 344 accGUAAGUGG--CGCACGGAAuu |||||| | |:|||:||| ttcCATTCAGCATGTGTGTCTTtg Wdr3; Wdr3_predicted; rCG_52071 rno-miR-132 358 373 gcUGGUACCGACAUCUGACAau |:|||| |||||| gaATCATG------GACTGTgg Wdr3; Wdr3_predicted; rCG_52071 rno-miR-139 357 374 UCUGUGCACGUGACAUCu ||| | || |||||:| AGAATCATGGACTGTGGg Wdr3; Wdr3_predicted; rCG_52071 rno-miR-140 471 498 gAUGGUAUC-------CCAUUUUGGUGA ||| |||| |||||||||| aTACAATAGCTTTTTCATTAAAACCACT Wdr3; Wdr3_predicted; rCG_52071 rno-miR-140* 337 375 ACAGGCAC-CAAGA---------UGG-----GACACCau ||||: || |||| |:| |||||| TGTCTTTGTCTTCTAAAGGAAGAATCATGGACTGTGGgg Wdr3; Wdr3_predicted; rCG_52071 rno-miR-145 352 381 UUCC--CUAAGGACC---C-UUUUGACCUg |||| || || ||| | ::::||||| AAGGAAGAATCATGGACTGTGGGGCTGGAg Wdr3; Wdr3_predicted; rCG_52071 rno-miR-146 135 159 UUGG---GUACCUUAAGUCAAGAgu |||| ||||| | |||||| AACCCAACATGGCTGTGAGTTCTgt Wdr3; Wdr3_predicted; rCG_52071 rno-miR-15b 438 458 ACAUU-UGGUACUACACGACGAu ||||| |:||||| |||||:| TGTAAGATCATGA--TGCTGTTt Wdr3; Wdr3_predicted; rCG_52071 rno-miR-193 362 381 gacCCUGAAACAUCCGGUCaa ||||| || :|||::| catGGACTGTG-GGGCTGGag Wdr3; Wdr3_predicted; rCG_52071 rno-miR-194 432 460 AGGUGUAC---CU----CAACGACAAugu ||::|||| || | ||||||| TCTGCATGTAAGATCATGATGCTGTTtgt Wdr3; Wdr3_predicted; rCG_52071 rno-miR-207 379 405 uUCCCUCCU---CU-CGGUCCUCUUCG ||||| || || ||| ||:||||| gAGGGATGATGGGATGCCTGGGGAAGC Wdr3; Wdr3_predicted; rCG_52071 rno-miR-214 420 440 GACGGACAGACACGGACG-ACA | | :||| || |:|||| ||| CAGGTTGT-TGAGTCTGCATGT Wdr3; Wdr3_predicted; rCG_52071 rno-miR-217 433 457 uAGGU-CAGUCAAGGACUACGUCAu | || || || || |||||| || cTGCATGTAAGATCATGATGCTGTt Wdr3; Wdr3_predicted; rCG_52071 rno-miR-22* 114 137 uUUCGAACGG---UGACUUCUUga |||: ||| :|||||||| gAAGTCAGCCTTGGCTGAAGAAac Wdr3; Wdr3_predicted; rCG_52071 rno-miR-27a 36 60 cgCCUUG-AAUCG---GUGACACuu |||:| || | |||||| aaGGAGCGTTCACATAAACTGTGgg Wdr3; Wdr3_predicted; rCG_52071 rno-miR-28 137 159 GAGUUAU-CUGACACUCGAGgaa | ||| | |:|||||||:|| CCCAACATGGCTGTGAGTTCtgt Wdr3; Wdr3_predicted; rCG_52071 rno-miR-296 387 408 UGUCCUAACUCCCCCC--CGGga |::||| || |||| ||| ATGGGA-TGCCTGGGGAAGCCtc Wdr3; Wdr3_predicted; rCG_52071 rno-miR-324-5p 374 396 ugugguuacgggaUCCCCUACGc | ||||||| ggctggagggatgATGGGATGCc Wdr3; Wdr3_predicted; rCG_52071 rno-miR-326 375 402 uGACCUCCUU-----CC--CGGGUCUCc |||||||:| || |||::|:| gCTGGAGGGATGATGGGATGCCTGGGGa Wdr3; Wdr3_predicted; rCG_52071 rno-miR-328 367 387 UGCCUUCCCGUCUCUCCCgguc || | :|||| | ||||| ACTGTGGGGCTG-GAGGGatga Wdr3; Wdr3_predicted; rCG_52071 rno-miR-336 365 387 uCUG--AUCUAUACCUUCCCACU ||| |:|: ||||:|| ||| gGACTGTGGGGCTGGAGGGATGA Wdr3; Wdr3_predicted; rCG_52071 rno-miR-337 351 380 UUUC---CGUAGUAUAU----CCUCGACUU |||| | |||||: | ||:||||:| AAAGGAAGAATCATGGACTGTGGGGCTGGA Wdr3; Wdr3_predicted; rCG_52071 rno-miR-338 352 380 aguugUUUUAG----UG--ACUACGACCU |:|||| || ||: |||||| aaggaAGAATCATGGACTGTGGGGCTGGA Wdr3; Wdr3_predicted; rCG_52071 rno-miR-347 371 386 ACCCGCUGGGUCUCCCUgu |||| | |::|||||| TGGG-G--CTGGAGGGAtg Wdr3; Wdr3_predicted; rCG_52071 rno-miR-349 357 378 ucuccaauuCUGUCGUCCCGAC ||| |::|||||| agaatcatgGACTGTGGGGCTG Wdr3; Wdr3_predicted; rCG_52071 rno-miR-370 399 424 uuggUCCAAGG--UGGGGU-CGUCCg || ||| || ||| ||||| gggaAGCCTCCTTACACCATGCAGGt Wdr3; Wdr3_predicted; rCG_52071 rno-miR-409-3p 40 67 cCCCAAGUG--------GCUCGUUGUAa | |||||| :|:||||||| aGCGTTCACATAAACTGTGGGCAACATc Wdr3; Wdr3_predicted; rCG_52071 rno-miR-409-5p 387 407 guuuCAAC-GAGCCCAUUGGA | || || ||| |:||| atggGATGCCTGGGGAAGCCT Wdr3; Wdr3_predicted; rCG_52071 rno-miR-412 380 405 UGCCGAUCACC---UGGUCCACUUCa | || |: ||| :|| || |||| AGGGATGATGGGATGCCTGGGGAAGc Wdr3; Wdr3_predicted; rCG_52071 rno-miR-433 412 451 UGUGG--C-UC------CUCGG--G-------UAGUACUA ||||| | || |||:| | |||||||| ACACCATGCAGGTTGTTGAGTCTGCATGTAAGATCATGAT Wdr3; Wdr3_predicted; rCG_52071 rno-miR-483 361 387 uGU-UCUG-CCCUCC--CCUCCUCACU || :||| | |:|| |||||: ||| tCATGGACTGTGGGGCTGGAGGGATGA Wdr3; Wdr3_predicted; rCG_52071 rno-miR-485 390 409 CUUAAGUAGUGCCGGUCGGAGa |:|| | | || |||||| GGATGC--CTGGGGAAGCCTCc Wdr3; Wdr3_predicted; rCG_52071 rno-miR-493 203 224 gaccguGUGUC-AUCUGGAAGU || || |:||||||:| atttttCAGAGTTGGACCTTTA Wdr3; Wdr3_predicted; rCG_52071 rno-miR-505 410 431 ccUUUGGU-CGUUC-ACAACUg | |||| |||:| |||||| ttACACCATGCAGGTTGTTGAg Wdr3; Wdr3_predicted; rCG_52071 rno-miR-541 55 80 ACACUGGUUGUAG---UCUUAGGGaa ||||: ||||||| | ||| || TGTGGGCAACATCTTAAAAATACCga Wdr3; Wdr3_predicted; rCG_52071 rno-miR-7 137 165 uuGUUUUAGUGAU--------CAGAAGGU ||| || :||: |||||||| ccCAACATGGCTGTGAGTTCTGTCTTCCA Wdr3; Wdr3_predicted; rCG_52071 rno-miR-7* 294 312 AUACCGUCUGACACUAAACAac |||||||||:| |||||| TATGGCAGATT---ATTTGTat Wdr3; Wdr3_predicted; rCG_52071 rno-miR-140 491 498 G---AUGGUAUCCC-------------------AUUUUGGUGA |||: ||| |||||||||| UUUGUACUUCUGGGAAUACAAUAGCUUUUUCAUUAAAACCACUU Wdr3; Wdr3_predicted; rCG_52071 rno-miR-322 90 97 ACAACGUCGCGA---------------------------AGUACAAA || | || ||||||| ---UGUGG-GCAACAUCUUAAAAAUACCGAAAAAGAAGAUCAUGUUG Wdr3; Wdr3_predicted; rCG_52071 rno-miR-324-5p 389 396 -----------UGUGGUUA--CGGGAUC-------CCCUACGC : ||:: ||: || ||||||| GGAAGAAUCAUGGACUGUGGGGCUGGAGGGAUGAUGGGAUGCC Wdr3; Wdr3_predicted; rCG_52071 rno-miR-409-3p 60 67 -------------CC-C-CAAGUG--------GCUCGUUGUAA || | |||||| :|:||||||| GCUUCUCUUCUAAGGAGCGUUCACAUAAACUGUGGGCAACAUC Wdr3; Wdr3_predicted; rCG_52071 rno-miR-433 444 451 ---UGUGG---------CUCCUCGGG---------UAGUACUA ||||| | |||:|: |||||||| CUUACACCAUGCAGGUUGUUGAGUCUGCAUGUAAGAUCAUGAUG Wdr3; Wdr3_predicted; rCG_52071 rno-miR-7 158 165 UU--------------GUUUUAGUGAU--------CAGAAGGU ||| || :||: |||||||| CUUGGCUGAAGAAACCCAACAUGGCUGUGAGUUCUGUCUUCCAU Wdr3; Wdr3_predicted; rCG_52071 rno-miR-7b 158 165 ----------------------UUGU--UUUAGUGUUCAGAAGGU ::| :|:|: |||||||| CUUGGCUGAAGAAACCCAACAUGGCUGUGAGUUCU--GUCUUCCAU

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Wdr3 RAID01222932 rno-miR-3084a-3p miRNA MIMAT0035740 Wdr3 mRNA 310720 Prediction 0.1828 Wdr3 RAID01323344 rno-miR-140-5p miRNA MIMAT0000573 Wdr3 mRNA 310720 Prediction 0.1828 Wdr3 RAID02171116 rno-miR-7a-5p miRNA MIMAT0000606 Wdr3 mRNA 310720 Prediction 0.1828 Wdr3 RAID02240499 rno-miR-7b miRNA MIMAT0000780 Wdr3 mRNA 310720 Prediction 0.1828 Wdr3 RAID02367417 rno-miR-3084d miRNA MIMAT0035745 Wdr3 mRNA 310720 Prediction 0.1828 Wdr3 RAID03066631 rno-miR-3084b-3p miRNA MIMAT0035742 Wdr3 mRNA 310720 Prediction 0.1828 Wdr3 RAID04050307 rno-miR-6216 miRNA MIMAT0024856 Wdr3 mRNA 310720 Prediction 0.1828