DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000585 rno-miR-340-3p 298689 Ube2j2 ccGAUAUUUCAUUGACUCUGCCu || |:| | |: ||||||| agCU-UGAUGCAGGCGAGACGGa 2 22 50 71 [rn4:5:172796441-172796462:+] 0.5276 151 7 -19.74 -0.2537 MIMAT0000598 rno-miR-347 298689 Ube2j2 acCCGCUGGGUCUCCCUGu | :| : | ||||||| caGUUGCUGCUGAGGGACa 2 18 21 39 [rn4:5:172796412-172796430:+] 0.4901 145 7 -18.05 -0.3824 MIMAT0000607 rno-miR-7a* 298689 Ube2j2 uacCGUCUGACACUAAACAAca |:| || || |||||| uuaGUAAAC-CUGUUUUGUUug 3 20 244 264 [rn4:5:172796635-172796655:+] 0.5276 133 0 -8.00 -0.1113 MIMAT0000607 rno-miR-7a* 298689 Ube2j2 uaccgucUGACACUAAACAAca ::| || |||||| uuuguuuGUUUUGUUUUGUUuu 3 16 257 278 [rn4:5:172796648-172796669:+] 0.5276 131 0 -3.95 -0.1141 MIMAT0000901 rno-miR-299 298689 Ube2j2 uacauacacccugcCAUUUGGu ||||||| uuugaaccuguuuaGUAAACCu 2 9 233 254 [rn4:5:172796624-172796645:+] 0.5276 140 7 -8.21 -1.1200 MIMAT0001320 rno-miR-421 298689 Ube2j2 guuGUUUGUAAAUUAC-UCCGg ||:| : ||:||| |||| ggcCAGA-GCUUGAUGCAGGCg 2 19 44 64 [rn4:5:172796435-172796455:+] 0.5276 120 0 -11.80 -0.2157 MIMAT0005280 rno-miR-743b 298689 Ube2j2 agAUAAGUCAUACCACAGAAAg ||| : |:|| ||||||| cuUAUCUCCUGUGUUGUCUUUu 2 21 214 235 [rn4:5:172796605-172796626:+] 0.5276 160 7 -12.35 -0.8276 MIMAT0005282 rno-miR-872 298689 Ube2j2 ggACUU-GAUUGUUCA-UUGGAa |||| ||: : ||| ||||| uuUGAACCUGUUUAGUAAACCUg 2 20 233 255 [rn4:5:172796624-172796646:+] 0.5276 126 0 -14.59 -1.0645 MIMAT0005336 rno-miR-760-5p 298689 Ube2j2 gcccgaGAC--CACCG--GACUCCCc ||| || || ||||||| cacaacCUGCAGUUGCUGCUGAGGGa 2 17 12 37 [rn4:5:172796403-172796428:+] 0.4526 146 7 -17.78 -0.1306 MIMAT0012844 rno-miR-665 298689 Ube2j2 uccCUGGA--GUCGGAGGACCa |:||| |:| ||||||| gguGGCCUGCCGGACUCCUGGg 2 18 89 110 [rn4:5:172796480-172796501:+] 0.5276 156 7 -26.46 -0.2331 MIMAT0001619 rno-miR-322 298689 Ube2j2 agGUUUUGUACUUAACGACGAc |:|:||: || ||||||| ggCGAGACG-GACAUGCUGCUg 2 21 61 81 [rn4:5:172796452-172796472:+] 0.5276 158 7 -23.32 -0.1678 MIMAT0000600 rno-miR-129 298689 Ube2j2 cguucggGUCUGGCGUUUUUc |||| ||||||| ccuuaaaCAGAAAGCAAAAAc 2 15 127 147 [rn4:5:172796518-172796538:+] 0.5276 154 7 -12.82 -0.9030 MIMAT0000784 rno-miR-15b 298689 Ube2j2 acaUUUGGUACUACACGACGAu :|: |: || ||||||| ggcGAGACG-GACAUGCUGCUg 2 20 61 81 [rn4:5:172796452-172796472:+] 0.5276 145 7 -15.43 -0.1710 MIMAT0000785 rno-miR-16 298689 Ube2j2 gcgGUUAUAAAUGCACGACGAu |:| | || ||||||| aggCGAGACGGACAUGCUGCUg 2 20 60 81 [rn4:5:172796451-172796472:+] 0.5276 151 7 -17.46 -0.1710 MIMAT0000792 rno-miR-23a 298689 Ube2j2 ccuuuagggaccgUUACACUa ||||||| aagcaaaaaccaaAAUGUGAu 2 9 138 158 [rn4:5:172796529-172796549:+] 0.5276 140 7 -11.63 -0.7311 MIMAT0000793 rno-miR-23b 298689 Ube2j2 ccauuagggaccgUUACACUa ||||||| aagcaaaaaccaaAAUGUGAu 2 9 138 158 [rn4:5:172796529-172796549:+] 0.5276 140 7 -11.63 -0.7311 MIMAT0000824 rno-miR-103 298689 Ube2j2 aguaucgggaCAUGUUACGACGa | || ||||||| caggcgagacGGAC-AUGCUGCu 2 14 59 80 [rn4:5:172796450-172796471:+] 0.5276 143 7 -16.04 -0.1045 MIMAT0000826 rno-miR-107 298689 Ube2j2 acuaucgggaCAUGUUACGACGa | || ||||||| caggcgagacGGAC-AUGCUGCu 2 14 59 80 [rn4:5:172796450-172796471:+] 0.5276 143 7 -16.61 -0.1045 MIMAT0000870 rno-miR-195 298689 Ube2j2 cgguuauaaagacACGACGAu ||||||| ggcgagacggacaUGCUGCUg 2 9 61 81 [rn4:5:172796452-172796472:+] 0.5276 140 7 -13.93 -0.1710 MIMAT0003383 rno-miR-497 298689 Ube2j2 auGUUUGGUGUCAC---ACGACGAc ||::| | | | ||||||| ugCAGGCGAGACGGACAUGCUGCUg 2 21 57 81 [rn4:5:172796448-172796472:+] 0.5276 143 7 -23.49 -0.1678 MIMAT0005320 rno-miR-495 298689 Ube2j2 uucUUCACGUGGUACAAACAAa || :::: |||||||| aguAAACCUGUUUUGUUUGUUu 2 20 246 267 [rn4:5:172796637-172796658:+] 0.5276 147 7 -14.37 -1.2112 MIMAT0005320 rno-miR-495 298689 Ube2j2 uucuucacgugguacAAACAAa |||||| uuuuguuuguuuuguUUUGUUu 2 8 256 277 [rn4:5:172796647-172796668:+] 0.5276 120 6 -6.74 -0.1117

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Ube2j2 RAID00247111 rno-miR-347 miRNA MIMAT0000598 Ube2j2 mRNA 298689 Prediction 0.1828 Ube2j2 RAID00286057 rno-miR-107-3p miRNA MIMAT0000826 Ube2j2 mRNA 298689 Prediction 0.1828 Ube2j2 RAID00552818 rno-miR-322-5p miRNA MIMAT0001619 Ube2j2 mRNA 298689 Prediction 0.1828 Ube2j2 RAID00895811 rno-miR-743b-3p miRNA MIMAT0005280 Ube2j2 mRNA 298689 Prediction 0.1828 Ube2j2 RAID01693948 rno-miR-23b-3p miRNA MIMAT0000793 Ube2j2 mRNA 298689 Prediction 0.1828 Ube2j2 RAID01734576 rno-miR-15b-5p miRNA MIMAT0000784 Ube2j2 mRNA 298689 Prediction 0.1828 Ube2j2 RAID01757911 rno-miR-495 miRNA MIMAT0005320 Ube2j2 mRNA 298689 Prediction 0.1828 Ube2j2 RAID02561465 rno-miR-299b-5p miRNA MIMAT0017833 Ube2j2 mRNA 298689 Prediction 0.1828 Ube2j2 RAID02743721 rno-miR-23a-3p miRNA MIMAT0000792 Ube2j2 mRNA 298689 Prediction 0.1828 Ube2j2 RAID03081100 rno-miR-195-5p miRNA MIMAT0000870 Ube2j2 mRNA 298689 Prediction 0.1828 Ube2j2 RAID03398437 rno-miR-103-3p miRNA MIMAT0000824 Ube2j2 mRNA 298689 Prediction 0.1828 Ube2j2 RAID03611033 rno-miR-16-5p miRNA MIMAT0000785 Ube2j2 mRNA 298689 Prediction 0.1828 Ube2j2 RAID03670575 rno-miR-299a-5p miRNA MIMAT0000901 Ube2j2 mRNA 298689 Prediction 0.1828 Ube2j2 RAID03678447 rno-miR-497-5p miRNA MIMAT0003383 Ube2j2 mRNA 298689 Prediction 0.1828 Ube2j2 RAID04015410 rno-miR-129-5p miRNA MIMAT0000600 Ube2j2 mRNA 298689 Prediction 0.1828