DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000577 rno-miR-337 287155 Stub1 uuuccgUAGUAUAUCCUCGACUu |||| | ||||||| ggcaagAUCAGCUUUGAGCUGAu 2 18 208 230 [rn4:10:15096669-15096691:-] 0.6483 153 7 -16.80 -0.2117 MIMAT0004648 rno-miR-339-3p 287155 Stub1 accgagacagcagcuCCGCGAGu ||||||| gaguugcccacacauGGCGCUCa 2 9 92 114 [rn4:10:15096871-15096893:-] 0.6070 140 7 -18.16 -0.8257 MIMAT0004712 rno-miR-23a* 287155 Stub1 uuuaggguagggGUCCUUGGGg |:||||||| uuugagcugaugCGGGAACCCu 2 11 220 241 [rn4:10:15096658-15096679:-] 0.6483 146 7 -19.48 -0.1603 MIMAT0004738 rno-miR-199a-3p 287155 Stub1 auugguuaCA-CGUCUGAUGACa || | :|||||||| auggcuggGUAGAGGACUACUGa 2 15 401 423 [rn4:10:15096398-15096420:-] 0.7775 149 7 -18.27 -0.4783 MIMAT0003174 rno-miR-540 287155 Stub1 gguCCUAGCUGGAGACUGGa ||| | ||||||||| cccGGA--GCCCUCUGACCc 2 18 323 340 [rn4:10:15096481-15096498:-] 0.7775 154 7 -24.89 -0.2262 MIMAT0005322 rno-miR-532-5p 287155 Stub1 ugucaGGAUGU--GAGUUCC-GUAc ||||:: | ||||| ||| caucaCCUAUGACCGCAAGGACAUu 2 18 258 282 [rn4:10:15096617-15096641:-] 0.6483 120 0 -16.87 -0.1336 MIMAT0005329 rno-miR-674-5p 287155 Stub1 auguggUGAGGGUAGAGU-CACg :|||:: ||||| ||| gaaugaGCUCUUCUCUCAGGUGg 2 17 144 166 [rn4:10:15096819-15096841:-] 0.7001 124 0 -16.44 -0.8010 MIMAT0012847 rno-miR-293 287155 Stub1 guuuCACAGUGU--GUC-AAACUCa ||| || : ||| |||||| uuguGUGGCAAGAUCAGCUUUGAGc 2 19 202 226 [rn4:10:15096673-15096697:-] 0.6483 121 6 -16.39 -0.3406 MIMAT0012854 rno-miR-764 287155 Stub1 uccuccuguACACUCGUGg ||||||||| aauaaagucUGUGAGCACu 2 11 652 670 [rn4:10:15096151-15096169:-] 0.5314 150 7 -16.57 -0.2510 MIMAT0012856 rno-miR-759 287155 Stub1 caGUUUUAACAAACGU-GAGACg || : || || || ||||| guCAUUGAUGCUUUCAUCUCUGa 2 21 376 398 [rn4:10:15096423-15096445:-] 0.7775 120 0 -13.23 -1.0360 MIMAT0000848 rno-miR-142-3p 287155 Stub1 aggUAUUUCA-UCCUUUGUGAUGu ||||||| | :|:|||||| guaAUAAAGUCUGUGAGCACUACa 2 21 650 673 [rn4:10:15096148-15096171:-] 0.5314 155 6 -20.56 -0.1040 MIMAT0000849 rno-miR-143 287155 Stub1 acUCGAUGUC-ACG-AAGUAGAGu ||: |: | ||| |||||||| gaAGUCAUUGAUGCUUUCAUCUCu 2 21 373 396 [rn4:10:15096425-15096448:-] 0.7775 158 7 -15.30 -1.0158 MIMAT0000872 rno-miR-199a-5p 287155 Stub1 cuUGUCCAUCAGAC--UUGUG-ACCc ||||| ||| || |||| ||| agACAGG-AGU-UGCCCACACAUGGc 2 22 86 109 [rn4:10:15096876-15096899:-] 0.6070 120 0 -19.86 -0.1626 MIMAT0000878 rno-miR-205 287155 Stub1 gucugaggccaccuUACUUCCu ||||||| uccccaacuuagccAUGAAGGa 2 9 353 374 [rn4:10:15096447-15096468:-] 0.7775 140 7 -12.68 -0.9668 MIMAT0000903 rno-miR-320 287155 Stub1 agcgggagagUUGGGUCGAAAa |: :||||||| uuguguggcaAGAUCAGCUUUg 2 13 202 223 [rn4:10:15096676-15096697:-] 0.6483 144 7 -14.69 -0.4633 MIMAT0001628 rno-miR-433 287155 Stub1 uguggcuccUCGGGUA-GUACUa :|||||| ||||| ggcucuguuGGCCCAUGCAUGAc 2 14 21 43 [rn4:10:15096942-15096964:-] 0.5140 125 0 -21.29 -0.1458

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G101793 Stub1 Rattus norvegicus 287155

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Stub1; rCG_34526 rno-let-7d 206 228 -UGAU-ACGUUGGAUGAU-GGAGA :||: ||| :|| |||: ||| UGCUGCUGCUGCC-ACUGUCCUG- Stub1; rCG_34526 rno-miR-106b 224 248 UAGACGU-------GACAGUCGUGAAAU |||:| |||| |||||| -CCUGUAAUAAAGUCUGUGAGCACU--- Stub1; rCG_34526 rno-miR-107 182 211 ACUAUCGGGA-----CAUGUUACGACGA- || |||: ||: : ||||||| GGAGAGCUGGUGAGGGUGGGUUGCUGCUG Stub1; rCG_34526 rno-miR-127 17 44 -UCGGU---UCGAGUCUGCCUAGGCU- :|| :|| |||: ||:||:|: UGGCACCCUGGCCCAGGAGGGUCUGGA Stub1; rCG_34526 rno-miR-145 172 193 UUCCCUAAGGACCC----UUUUGACCUG |:||||| |:|:|||| ------CUUCUGGGCUGGAGAGCUGGU- Stub1; rCG_34526 rno-miR-148b 229 248 -UGUUUCAAGACACUACGUGACU |:|||| ||||||| ||||| AAUAAAG-UCUGUGA-GCACU-- Stub1; rCG_34526 rno-miR-151 37 66 -GGAGUUCC----UCGGAGUCAGAU-CA- :|| :||| |||: ||||| || GUCUGGAGGCAGAAGCUCCAGUCCCUGUA Stub1; rCG_34526 rno-miR-151* 143 168 -AUGAUCUGACACUCGA--GGAGCU |:||:|:| ||||| |||:| UUGCUGGGCCAUGAGCCUCCCUUGU Stub1; rCG_34526 rno-miR-15b 184 212 ACAUUUGGUA----CUAC---ACGACGAU- :|:|:: |:|| |||||||: --AGAGCUGGUGAGGGUGGGUUGCUGCUGC Stub1; rCG_34526 rno-miR-16 186 215 GCGGUUAUA-------AAUGCACGACGAU- ||: |: ||:| |||||||: AGCUGGUGAGGGUGGGUUGC-UGCUGCUGC Stub1; rCG_34526 rno-miR-17 218 248 -UGAU-GGACGU-------GACAUUCGUGAAAC |||: ||||:| ||||:|||||| CACUGUCCUGUAAUAAAGUCUGUGAGCACU--- Stub1; rCG_34526 rno-miR-183 195 221 GUCACUUAA-GAUGGU--C-ACGGUAU :||| || ||:|: | ||||| GGGUGGGUUGCUGCUGCUGCUGCCAC- Stub1; rCG_34526 rno-miR-184 20 62 -UGGGA--------------AUA---GUCAA-GAGG-CAGGU ||||| |: ||| |||| |||| CACCCUGGCCCAGGAGGGUCUGGAGGCAGAAGCUCCAGUCCC Stub1; rCG_34526 rno-miR-195 186 218 -CGGUUA--------UAAAGAC-ACGACGAU- ||: | :|| ||| |||||||: AGCUGGUGAGGGUGGGUUGCUGCUGCUGCUGC Stub1; rCG_34526 rno-miR-207 176 200 UUCCCU-CCUCUCGGUC-CUCUUCG- ||| |||||||::| ||| :|: -UGGGCUGGAGAGCUGGUGAG-GGUG Stub1; rCG_34526 rno-miR-20a 219 248 -GAU-GGACGU-------GAUAUUCGUGAAAU ||: ||||:| ||:|:|||||| ACUGUCCUGUAAUAAAGUCUGUGAGCACU--- Stub1; rCG_34526 rno-miR-20b 223 248 UGGACGU-------GAUACUCGUGAAAC ||||:| ||:|||||||| UCCUGUAAUAAAGUCUGUGAGCACU--- Stub1; rCG_34526 rno-miR-214 11 46 -GACGGACA----GACA---------CGGACGACA ||||||| ||| |:||| | CCUGCCUGGCACCCUGGCCCAGGAGGGUCUGGAGG Stub1; rCG_34526 rno-miR-22* 154 191 UUUCG-----AACGG----------UGACUUCUUGA- :||| |||:| :|||:|||:|| UGAGCCUCCCUUGUCUCCCUUCUGGGCUGGAGAGCUG Stub1; rCG_34526 rno-miR-24 141 161 GACAAGGACGACUUG--ACUCGGU |:|||||::| |||||| ----CCUUGCUGGGCCAUGAGCCU Stub1; rCG_34526 rno-miR-292-5p 45 79 -GUUUUC----UCGGGGG------UCAAACUCA- ||:||| ||:|||: |||||| || GCAGAAGCUCCAGUCCCUGUAUAUAGUUUGUGUC Stub1; rCG_34526 rno-miR-298 192 220 CCUUCUUGUCGG----GAGGA-GACGG- ||:|: :|:: || || ||||| UGAGGGUGGGUUGCUGCUGCUGCUGCCA Stub1; rCG_34526 rno-miR-324-3p 28 50 -GGUCGUCGUGGACC-CCGUCACC |||| || :|||| ||||| CCCAGGAGGGUCUGGAGGCAGA-- Stub1; rCG_34526 rno-miR-326 23 47 UGACC---UCCUUCCCGGGUCUCC- |||| ||| ||||:|::|||| CCUGGCCCAGG-AGGGUCUGGAGGC Stub1; rCG_34526 rno-miR-329 181 205 UUUUUCCAAUCGA-----CCCACACAA- || |||| ||||| ||| ----UGGAGAGCUGGUGAGGGUGGGUUG Stub1; rCG_34526 rno-miR-331 15 38 AAGAUCCUAU--CCGGGUCC-CCG ||:| |||||||| || -CCUGGCACCCUGGCCCAGGAGGG Stub1; rCG_34526 rno-miR-336 176 202 -UCUGAUCUAU--ACC-UUCCCACU- :|:||:|| ||| :||||||: UGGGCUGGAGAGCUGGUGAGGGUGGG Stub1; rCG_34526 rno-miR-337 176 193 UUUCCGUAGUAUAUC-CUCGACUU :||| |:| ||||||: -UGGGC------UGGAGAGCUGGU Stub1; rCG_34526 rno-miR-338 130 152 -AGUUGUUUUAGUGACUACGACCU- |||:|| ||| || ||||||: CUCAGCAU-AUCCCU--UGCUGGGC Stub1; rCG_34526 rno-miR-341 82 102 UGACUGGCUGGC--UGGCUAGCU |:|| :|| |:||:|| --GGGCCUGCCCCCAUCGGUCC- Stub1; rCG_34526 rno-miR-343 173 202 -AGACCCG------UGUGC-CUCCCUCU- ||||||| :| | ||||| |: UUCUGGGCUGGAGAGCUGGUGAGGGUGGG Stub1; rCG_34526 rno-miR-346 30 51 UCUCCGUCCGUGAGU-CCGUCUGU ||| ||| || : |||||| -CAGG-AGGGUCUGGAGGCAGAA- Stub1; rCG_34526 rno-miR-347 175 202 -ACCCG----CUGGGU--CUCCCUGU- ||||| || |: ||||| : CUGGGCUGGAGAGCUGGUGAGGGUGGG Stub1; rCG_34526 rno-miR-34a 182 211 -UUGUUGGUCG-----AUUCUGUGACGGU :| |:|::|: |::| :||||: GGAGAGCUGGUGAGGGUGGGUUGCUGCUG Stub1; rCG_34526 rno-miR-34b 195 220 GUUAGUCGAUUA--AUG-UGACGGAU ::| :|:|: |:| :||||| GGGUGGGUUGCUGCUGCUGCUGCCA- Stub1; rCG_34526 rno-miR-34c 195 220 CGUUAGUCGAU--UGAUG-UGACGGA ::| :|:|: :||:| :||||| -GGGUGGGUUGCUGCUGCUGCUGCCA Stub1; rCG_34526 rno-miR-370 4 30 UUGGUCCAAGGUGGGGUCGU----CCG- ||| ||| ||::||| ||| -CCCAUG-UCCUGCCUGGCACCCUGGCC Stub1; rCG_34526 rno-miR-378 18 46 -UGUGU--CCUGGACCU--CAGUCCUC- :||| || || ||| ||| |||| GGCACCCUGGCCCAGGAGGGUCUGGAGG Stub1; rCG_34526 rno-miR-381 154 169 CUCUCGAACGGGAACAUAU |||| ||||||| -UGAGCCU-CCCUUGUC-- Stub1; rCG_34526 rno-miR-383 148 183 -UCGGUGU----------CAGU-GGAAGACUAGA- :||||:: ||| ||||||| || GGGCCAUGAGCCUCCCUUGUCUCCCUUCUGGGCUG Stub1; rCG_34526 rno-miR-412 177 198 UGCCGAUCACCUGGUCCACUUCA ||||:| || | |||||:| -GGGCUGGA-GAGCUGGUGAGGG Stub1; rCG_34526 rno-miR-422b 13 44 -CGGAA-----GACUGAGGU----UCAGGUCA |||| |||:| ||| :|||::| UGCCUGGCACCCUGGC-CCAGGAGGGUCUGGA Stub1; rCG_34526 rno-miR-424 187 212 AGGU--UUUGUACUUAACGACGAC- |: :|: :|| ||||||||| GCUGGUGAGGGUGGGUUGCUGCUGC Stub1; rCG_34526 rno-miR-449 178 221 -UGG----UCGAUUGUU--------------AUG-UGACGGU :|: |||| ::| |:| :|||||| GGCUGGAGAGCUGGUGAGGGUGGGUUGCUGCUGCUGCUGCCAC Stub1; rCG_34526 rno-miR-483 176 202 UGUUCUGCCCUC----CC-CUCCUCACU- :|:| |||| || |||| |||: --UGGGCUGGAGAGCUGGUGAGG-GUGGG Stub1; rCG_34526 rno-miR-485 138 163 CUUAAGUA---GUGCCGG---UCGGAGA || | |||| |||||| ---AUCCCUUGCUGGGCCAUGAGCCUCC Stub1; rCG_34526 rno-miR-497 184 212 AUGUUUGG----UGUCAC---ACGACGAC- :|:|: | :||| |||||||| --AGAGCUGGUGAGGGUGGGUUGCUGCUGC Stub1; rCG_34526 rno-miR-503 195 215 GUCAUGACAAGGGCGACGAU- :||: ||| |:||||||: GGGUGG-GUUGCUGCUGCUGC Stub1; rCG_34526 rno-let-7d 199 221 ugauACGUUG--GAUGAUGGAGA ||| :| ||:||:|| || gggtTGCTGCTGCTGCTGCCACT Stub1; rCG_34526 rno-miR-106b 230 247 uagacguGACAGUCGUGAaau |||| |||||| ataaagtCTGTGAGCACT--- Stub1; rCG_34526 rno-miR-107 199 218 aCUAUCGG-GACAUGUUACGACGa |:| ||: ||| | |||||| gGGTTGCTGCTG--C--TGCTGCc Stub1; rCG_34526 rno-miR-127 21 42 UCGGUUCGAGUCUGCCUAGGCu | || :|| |||: ||:||:| ACCCTGGCCCAGGAGGGTCTGg Stub1; rCG_34526 rno-miR-145 166 193 uucccuaAGGAC----CCUUUUGACCug |:||| |||:|:|||| gtctcccTTCTGGGCTGGAGAGCTGGtg Stub1; rCG_34526 rno-miR-148b 230 247 UGUUUCAAGACACUACGUGAcu |:|||| |||||| ||||| ATAAAG-TCTGTG-AGCACT-- Stub1; rCG_34526 rno-miR-151 23 43 GGA---GUUCCUCGGAGUCAGAUCa ||| | ||||| :||||:| CCTGGCCCAGGAG----GGTCTGGa Stub1; rCG_34526 rno-miR-151* 144 167 AUGAUCUGACACUC-GA-GGAGCu |:||:|:| |||| || |||:| TGCTGGGCCATGAGCCTCCCTTGt Stub1; rCG_34526 rno-miR-15b 194 216 acauuugguACUAC-ACGACGAu || || ||||||| agggtgggtTGCTGCTGCTGCTg Stub1; rCG_34526 rno-miR-16 193 213 gcgguuauaAAUGCACGACGAu ||:| ||||||| gagggtgggTTGC-TGCTGCTg Stub1; rCG_34526 rno-miR-17 219 247 UGAU-GGACGU-------GACAUUCGUGAaac |||: ||||:| ||||:|||||| ACTGTCCTGTAATAAAGTCTGTGAGCACT--- Stub1; rCG_34526 rno-miR-183 195 221 guCACUUAA-GAUG--GUC-ACGGUau |||::|| ||:| | | ||||| ggGTGGGTTGCTGCTGCTGCTGCCAct Stub1; rCG_34526 rno-miR-184 38 61 ugggaauaGUC-AAGAGG-CAGGu ||| |||| |||| tctggaggCAGAAGCTCCAGTCCc Stub1; rCG_34526 rno-miR-195 195 216 cgguuauAAAGAC-ACGACGAu || ||| ||||||| gggtgggTTGCTGCTGCTGCTg Stub1; rCG_34526 rno-miR-207 175 197 uuCCC-UCCUCUCGGUCCUCUUCg ||| |||||||: || ||:| ctGGGCTGGAGAGCT-GGTGAGGg Stub1; rCG_34526 rno-miR-20a 220 247 GAU-GGACGU-------GAUAUUCGUGAaau ||: ||||:| ||:|:|||||| CTGTCCTGTAATAAAGTCTGTGAGCACT--- Stub1; rCG_34526 rno-miR-214 1 19 gacggacagACACGGAC-GACa ||| |||| ||| --taccccaTGT-CCTGCCTGg Stub1; rCG_34526 rno-miR-22* 171 189 uuucGAACGGUGACUUCUUGA || | :|||:|||:|| ccttCTGG--GCTGGAGAGCT Stub1; rCG_34526 rno-miR-24 136 153 gACAAGGACGACUUGACUCGGU | | ||| || |||:|||| aTATCCCT--TG--CTGGGCCA Stub1; rCG_34526 rno-miR-292-5p 46 77 GUUUUC----UCGGGG------GUCAAACUCA ||:||| ||:||| :|||||| || CAGAAGCTCCAGTCCCTGTATATAGTTTGTGT Stub1; rCG_34526 rno-miR-298 195 218 CCUUCUUGUCGG-GA-GGAGACGG ||: |::: ||: || |: ||||| GGGTGGGTTGCTGCTGCTGCTGCC Stub1; rCG_34526 rno-miR-29c* 80 101 cuugugguccucuuUAGCCAGu ||||||| ctgggcctgcccccATCGGTCc Stub1; rCG_34526 rno-miR-324-3p 29 51 GGUCGUCGUGGACC-CCGUCacc |||| || ::|||| ||||| CCAGGAGGGTCTGGAGGCAGaag Stub1; rCG_34526 rno-miR-326 15 36 uGACCUCCUUCCCGGGU-CUCC |||| |||||| |||| cCTGGCACCCTGGCCCAGGAGG Stub1; rCG_34526 rno-miR-329 177 203 uuuuuCCAAUCGA-----CCCACACAA || |||| ||||| ||| gggctGGAGAGCTGGTGAGGGTGGGTT Stub1; rCG_34526 rno-miR-331 14 37 aaGAUCCU--AUCCGGGUCC-CCg ||:| | |||||||| || gcCTGGCACCCTGGCCCAGGAGGg Stub1; rCG_34526 rno-miR-336 177 200 uCUGAUCUAU--ACC-UUCCCACu |:||:|| | ||| :|||||| gGGCTGGAGAGCTGGTGAGGGTGg Stub1; rCG_34526 rno-miR-337 169 192 uuuccguaguauAUC-CUCGACuu |:| |||||| tcccttctgggcTGGAGAGCTGgt Stub1; rCG_34526 rno-miR-338 131 150 AGUUGUUUUAGUGACUACGACCu |||:| | ||| || |||||| TCAGC-ATATCCCT--TGCTGGg Stub1; rCG_34526 rno-miR-341 79 98 uGA-CUGGCUGGCUGGCUAGCu || |:|| :|| || |||| cCTGGGCCTGCC--CCCATCGg Stub1; rCG_34526 rno-miR-343 174 200 AGACCCG------UGUGC-CUCCCUCu ||||||| :| | ||||| | TCTGGGCTGGAGAGCTGGTGAGGGTGg Stub1; rCG_34526 rno-miR-346 29 51 ucUCCGUCCGUGA-GUCCGUCUgu ||| ||| || ||||||| ccAGG-AGGGTCTGGAGGCAGAag Stub1; rCG_34526 rno-miR-347 176 200 ACCCG----CUGGGU--CUCCCugu ||||| || |:: ||||| TGGGCTGGAGAGCTGGTGAGGGtgg Stub1; rCG_34526 rno-miR-34a 205 225 uuguugGUCGAUUCUGUGACGGu | ||| | |||||:| ctgctgCTGCT--GCCACTGTCc Stub1; rCG_34526 rno-miR-34b 204 227 guuaGUCGAUUAAUGUGAC-GGAu | |||: | ||||| ||| gctgCTGCTGCTGCCACTGTCCTg Stub1; rCG_34526 rno-miR-34c 204 225 CGUUAGUCGAUUGAU-GUGACGGa || : | ||| :||: |||||:| GCTG-CTGCT-GCTGCCACTGTCc Stub1; rCG_34526 rno-miR-370 13 37 uuGGUCCAAGG--UGGGGUCGUCCg || || || : ||||| ||| tgCCTGGCACCCTGGCCCAGGAGGg Stub1; rCG_34526 rno-miR-378 21 44 UGUGUCCUGGACCU--CAGUCCUC || | || || ||| ||| |||| ACCCTGGCCCAGGAGGGTCTGGAG Stub1; rCG_34526 rno-miR-381 153 170 cuCUCGAACGGGAACAUAu |||| | ||||||| | atGAGCCT-CCCTTGTCTc Stub1; rCG_34526 rno-miR-383 156 181 UCGGUG---UCAG-UGGAAGACUAGA |||| | ||| |||||||: || AGCCTCCCTTGTCTCCCTTCTGGGCT Stub1; rCG_34526 rno-miR-412 176 197 ugCCGAUCACCUGGUCCACUUCa ||||:| || | |||||:| tgGGCTGG-AGAGCTGGTGAGGg Stub1; rCG_34526 rno-miR-422b 34 58 cggaAGACUGAGG--UUC-AGGUCA ||||: | ||| |||||| agggTCTGGAGGCAGAAGCTCCAGT Stub1; rCG_34526 rno-miR-422b 10 33 cGGA-AGACUG-AGGUUCAGGUCa ||| |||:| || :| |||| tCCTGCCTGGCACCCTGGCCCAGg Stub1; rCG_34526 rno-miR-424 189 210 agguuUUGUACUUAACGACGAC |: :||::||||||||| tggtgAGGGTGGGTTGCTGCTG Stub1; rCG_34526 rno-miR-449 203 225 ugGUCGAUUGUUAU-GUGACGGu | |||: :: |: |||||:| tgCTGCTGCTGCTGCCACTGTCc Stub1; rCG_34526 rno-miR-483 174 200 uGUUCUGCCCUC----CC-CUCCUCACu | :|:| |||| || |||| ||| tCTGGGCTGGAGAGCTGGTGAGG-GTGg Stub1; rCG_34526 rno-miR-485 136 162 cuUAAGUAGUG--CCG---GUCGGAGa || | |::| ||| |||||| atATCCCTTGCTGGGCCATGAGCCTCc Stub1; rCG_34526 rno-miR-497 186 210 auguuuggUGUCAC---ACGACGAC | :||| |||||||| agctggtgAGGGTGGGTTGCTGCTG Stub1; rCG_34526 rno-miR-503 194 213 gucaugaCAAGGGCGACGAu ||| |:|||||| agggtggGTTGCTGCTGCTg Stub1; rCG_34526 rno-miR-15b 203 210 -------------ACA-UUUGGUA----CUAC---ACGACGAU || :|:|:: |:|| |||||||: CUCCCUUCUGGGCUGGAGAGCUGGUGAGGGUGGGUUGCUGCUGC Stub1; rCG_34526 rno-miR-15b 206 213 ----------ACA-UUUGGUA----CUAC------ACGACGAU || :|:|:: |:|| |||||||: CCUUCUGGGCUGGAGAGCUGGUGAGGGUGGGUUGCUGCUGCUGC Stub1; rCG_34526 rno-miR-15b 209 216 -------ACA-UUUGGUA----CUAC---------ACGACGAU || :|:|:: |:|| |||||||: UCUGGGCUGGAGAGCUGGUGAGGGUGGGUUGCUGCUGCUGCUGC Stub1; rCG_34526 rno-miR-16 203 210 G------------------CGGUUAUAA--AUGC-ACGACGAU || :|: |: | |||||||: CUCCCUUCUGGGCUGGAGAGCUGGUGAGGGUGGGUUGCUGCUGC Stub1; rCG_34526 rno-miR-16 206 213 G---------------CGGUUAUA-------AAUGCACGACGAU || :|: ||:| |||||||: CCUUCUGGGCUGGAGAGCUGGUGAGGGUGGGUUGC-UGCUGCUGC Stub1; rCG_34526 rno-miR-16 209 216 G------------CGGUUAUA-------AAUG-C-ACGACGAU || :|: ||:| | |||||||: UCUGGGCUGGAGAGCUGGUGAGGGUGGGUUGCUGCUGCUGCUGC Stub1; rCG_34526 rno-miR-195 203 210 -------------------CGGUUAUAAAGA--C-ACGACGAU || :|: | |||||||: CUCCCUUCUGGGCUGGAGAGCUGGUGAGGGUGGGUUGCUGCUGC Stub1; rCG_34526 rno-miR-195 206 213 ----------------CGGUUAUAAA-----GAC-ACGACGAU || :|: :|| |||||||: CCUUCUGGGCUGGAGAGCUGGUGAGGGUGGGUUGCUGCUGCUGC Stub1; rCG_34526 rno-miR-195 209 216 -------------CGGUUAUAAA--------GAC-ACGACGAU || :|: ||| |||||||: UCUGGGCUGGAGAGCUGGUGAGGGUGGGUUGCUGCUGCUGCUGC Stub1; rCG_34526 rno-miR-29c* 94 101 CU---------------------UGUGGUCCUCUUUAGCCAGU : :|| ||||||| CCCUGUAUAUAGUUUGUGUCCCUGGGCCUGCCCCCAUCGGUCC Stub1; rCG_34526 rno-miR-424 203 210 AGGU---------------------UUUGUACUUAACGACGAC :|: :||::||||||||| CUCCCUUCUGGGCUGGAGAGCUGGUGAGGGUGGGUUGCUGCUGC Stub1; rCG_34526 rno-miR-424 206 213 AGGU------------------UUUGUACUUA---ACGACGAC :|: :||::| |||||||| CCUUCUGGGCUGGAGAGCUGGUGAGGGUGGGUUGCUGCUGCUGC Stub1; rCG_34526 rno-miR-424 209 216 AGGU---------------UUUGUACUUA------ACGACGAC :|: :||::| |||||||| UCUGGGCUGGAGAGCUGGUGAGGGUGGGUUGCUGCUGCUGCUGC Stub1; rCG_34526 rno-miR-497 203 210 AUG--------------UUUGG----UGUCAC---ACGACGAC :|:|: | :||| |||||||| CUCCCUUCUGGGCUGGAGAGCUGGUGAGGGUGGGUUGCUGCUGC Stub1; rCG_34526 rno-miR-497 206 213 AUG-----------UUUGG----UGUCAC------ACGACGAC :|:|: | :||| |||||||| CCUUCUGGGCUGGAGAGCUGGUGAGGGUGGGUUGCUGCUGCUGC Stub1; rCG_34526 rno-miR-497 209 216 A----------------------UGUUUGGUGUCACACGACGAC : :: :| |||||||| UCUGGGCUGGAGAGCUGGUGAGGGUGGGUUGCUGC-UGCUGCUGC

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Stub1 RAID00097356 rno-miR-143-3p miRNA MIMAT0000849 Stub1 mRNA 287155 Prediction 0.1828 Stub1 RAID00428687 rno-miR-764-5p miRNA MIMAT0012854 Stub1 mRNA 287155 Prediction 0.1828 Stub1 RAID01083513 rno-miR-199a-5p miRNA MIMAT0000872 Stub1 mRNA 287155 Prediction 0.1828 Stub1 RAID01612756 rno-miR-433-3p miRNA MIMAT0001628 Stub1 mRNA 287155 Prediction 0.1828 Stub1 RAID01741653 rno-miR-216a-3p miRNA MIMAT0017160 Stub1 mRNA 287155 Prediction 0.1828 Stub1 RAID01862790 rno-miR-142-3p miRNA MIMAT0000848 Stub1 mRNA 287155 Prediction 0.1828 Stub1 RAID02101584 rno-miR-883-5p miRNA MIMAT0017294 Stub1 mRNA 287155 Prediction 0.1828 Stub1 RAID02264421 rno-miR-1188-3p miRNA MIMAT0017855 Stub1 mRNA 287155 Prediction 0.1828 Stub1 RAID03021818 rno-miR-205 miRNA MIMAT0000878 Stub1 mRNA 287155 Prediction 0.1828 Stub1 RAID03560555 rno-miR-320-3p miRNA MIMAT0000903 Stub1 mRNA 287155 Prediction 0.1828