DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Trim8 rno-let-7e 251 275 -UGAUA-UGUUGGAGGAUGGAGU- :||: |||: ||||| |||| AGCUGGGACAGUAUCCUAACUCAA Trim8 rno-let-7f 250 275 -UUGAUA-UGUUAGAUGAUGGAGU- |:||: |||:| ||| |||| GAGCUGGGACAGUAUCCUAACUCAA Trim8 rno-miR-103 218 240 AGUAUCGGGACAUGUUA-CGACGA :|:|||: :||: ||||| -AGUGGCCUGG-GCAGGGGCUGCA Trim8 rno-miR-106b 270 292 UAGA--CGUGACAGUCGUGAAAU- || |||||| :|| ||||| CUCAAGGCACUG--GGCUCUUUAU Trim8 rno-miR-107 206 240 -ACUAUCG---------GGACAUGUUA-CGACGA ||||:|: |||| :||: ||||| GUGAUGGUGGGAAGUGGCCUGGGCAGGGGCUGCA Trim8 rno-miR-10b 223 243 UGUGUUUAAGCCAAGAUGUCCC | :: || ||:|||| CCUGGGCA--GGGGCUGCAGGU Trim8 rno-miR-125a 201 236 GUGUCCAA-------UUUC-CCAGA---GUCCCU- : |||| :||| || || |||||: AGGAGGUGAUGGUGGGAAGUGGCCUGGGCAGGGGC Trim8 rno-miR-127 242 268 -UCGG---UUCGAGUCUGCC-UAGGCU :||| :|||| :||| | |||| UGGCCCUGGAGCUGGGACAGUAUCCU- Trim8 rno-miR-129* 218 238 UACGAAAAACCCCAUUCCCGAA |: |||| |:||||| -AGUGGCCUGGGC-AGGGGCUG Trim8 rno-miR-133a 338 367 -UGUCGACCAACUUC----CCC-UGGUU- |::||||| |||| ||| :|||| CAUGGCUGGAAGAAGCCUUGGGCGCCAAC Trim8 rno-miR-133b 339 367 -AUCGACCAACUUC----CCC-UGGUU- |:||||| |||| ||| :|||| AUGGCUGGAAGAAGCCUUGGGCGCCAAC Trim8 rno-miR-146 556 581 -UUGGGU-ACCUUAAGUCAAGAGU- |:|| : ||||:|||| ||||| CAGCCGGAUGGAGUUCAAGUCUCAA Trim8 rno-miR-152 244 284 -GGGUUCAAGAC---------------AGUA-CGUGACU- ||| :| ||| ||| ||||||: GCCCUGGAGCUGGGACAGUAUCCUAACUCAAGGCACUGGG Trim8 rno-miR-17 268 291 -UGAUGGA-CGUGACAUUCGUGAAAC ||| | |||||| :|| |||| AACU-CAAGGCACUG--GGCUCUUUA Trim8 rno-miR-18 573 599 AUAGA---CGU--GAUCUACGUGGAAU :||| ||| || ||||||| AGUCUCAAGCAGCCUUUG-GCACCUUC Trim8 rno-miR-181a* 6 26 CCAUGUUAGUUGCCAGCUACCA :|| |||:|| || ||| --AGCAGGCAAUGGACGCUGGG Trim8 rno-miR-184 84 103 -UGGGAAUAGUCAAGAGGCAGGU ||||| || ||||| ||| CACCCUCCUC---UCUCC-UCCU Trim8 rno-miR-185 97 114 CUUGACGGAAAGA-GAGGU- || ||||||| ||||| --CCU-CCUUUCUUCUCCAU Trim8 rno-miR-199a 236 259 CUUGUCCAUCA-GACUUGUGACCC- :|||||:| |||:| :||||| -UGCAGGUGGCCCUGGA-GCUGGGA Trim8 rno-miR-207 195 237 UUCC--CUCCUC---------------UCGG-UCC-UCUUCG || |||||| :||| :|| || || -UGGAUGAGGAGGUGAUGGUGGGAAGUGGCCUGGGCAGGGGCU Trim8 rno-miR-20a 268 292 GAUGGA---CGUGAUAUUCGUGAAAU- ||: |||||: :|| ||||| -AACUCAAGGCACUG--GGCUCUUUAU Trim8 rno-miR-20b* 214 242 GUCUUCA-------CGAGUGUGACGUCA :||||| || : :|||||| GGGAAGUGGCCUGGGCAGGGGCUGCAGG Trim8 rno-miR-212 232 257 -CCGG----CACUG--ACCUCUGACAAU |||: |||:| ||||| ||| GGGCUGCAGGUGGCCCUGGAG-CUGG-- Trim8 rno-miR-214 390 407 GACGGACAGACACGGACGACA ||| ||||| |||| -AGCCCA---GUGCCCGCUGG Trim8 rno-miR-217 436 466 UAGGUCAGUCA----AG-GACUACGUCAU- ||::| |||| || |||:|| |||| UUCUGGGCAGUUUGAUCACUGGUGGAGUAA Trim8 rno-miR-221 1 24 CUUUGGGUCGUCUGUUACAU-CGA- :|| |||||:||||| ||| --CGCCAAGCAGGCAAUGGACGCUG Trim8 rno-miR-24 241 262 GACAAGGACGACUUGACUCGGU- || |||| ||:|||:| || GUGGCCCUG--GAGCUGGGACAG Trim8 rno-miR-28 269 291 -GAGUUAUCUGACACUCGAGGAA- |||| ||:| ||:||||:|| ACUCA--AGGCACUGGGCUCUUUA Trim8 rno-miR-296 200 227 UGUCCUA-ACU-CC-CCC----CCGGGA |||| ||| || ||| ||||: -GAGGAGGUGAUGGUGGGAAGUGGCCUG Trim8 rno-miR-298 382 410 -CCUUCUUGUCGGGA---GGA-GAC-GG- ||:|| :|||||| || ||| || CGGGAG-GCAGCCCAGUGCCCGCUGGCCU Trim8 rno-miR-324-3p 228 252 GGUCGUCGUGGACC-CCGUCACC- ||| :|| | || ||| ||| GCAGGGGCUGCAGGUGGCCCUGGA Trim8 rno-miR-324-5p 233 260 -UGUGGUUA--CGGGAUC----CCCUACGC :| ||: |||||:| |||| GGCUGCAGGUGGCCCUGGAGCUGGGAC--- Trim8 rno-miR-326 209 236 UGACC-UCCUUC-CCGG----GUCUCC- ||| :||||| |||| |||:|| -AUGGUGGGAAGUGGCCUGGGCAGGGGC Trim8 rno-miR-328 214 238 UGCCUUC-CCGU-CUC--UCCCGGUC ||||| ||| |:| :||||: -GGGAAGUGGCCUGGGCAGGGGCUG- Trim8 rno-miR-331 212 237 AAGAUCCUAU-CCGG----GUCCCCG- |:||| |||| ||||||| --GUGGGAAGUGGCCUGGGCAGGGGCU Trim8 rno-miR-337 229 259 -UUUCCGUAG--UAUAU---CCUCGACUU- |::||| :|: |||||||:: CAGGGGCUGCAGGUGGCCCUGGAGCUGGGA Trim8 rno-miR-339 231 260 ACUCGA---------GGACCUCCUGUCCCU- |:||| ||||||| |||| GGGGCUGCAGGUGGCCCUGGAGCU--GGGAC Trim8 rno-miR-340 232 261 -CCGAUAUUUCAU--------UGACUCUGCCU ||||: |:||: :|||:||| GGGCUGC-AGGUGGCCCUGGAGCUGGGACA-- Trim8 rno-miR-343 436 464 -AGACCCGU-------GUGCCUCCCUCU |||||||| ||| |: |||| UUCUGGGCAGUUUGAUCACUGGUGGAGU Trim8 rno-miR-345 221 241 -CGUGACCUGAUCCCCAGUCGU- || ||||:| ||||| | ||| GGC-CUGGGC-AGGGG-CUGCAG Trim8 rno-miR-346 225 262 UCUCCGUCCGUGA-GUCCG-------------UCUGU- :|||||| :|| ||||: :|||| -UGGGCAGGGGCUGCAGGUGGCCCUGGAGCUGGGACAG Trim8 rno-miR-347 239 262 ACCCGCUGGG-UCU---CCCUGU- ||:|:||| :|| |||||| -AGGUGGCCCUGGAGCUGGGACAG Trim8 rno-miR-349 201 239 -UCUCCAAU-UCUGUCG-------------UCCCGAC- :||||| :| :| :|||||| AGGAGGUGAUGGUGGGAAGUGGCCUGGGCAGGGGCUGC Trim8 rno-miR-351 231 260 GUCCGA-GUUUCCCGAGGAGU----CCCU- :|||| ||:: ||| ||| : |||| GGGGCUGCAGGUGGC-CCUGGAGCUGGGAC Trim8 rno-miR-363-5p 60 90 UUUAACGUAGCACU-----------AGGUGGGC |||||: || ||||||| ---AUGCAUUCAGAGACCGGCCCUCUCCACCCU Trim8 rno-miR-370 350 391 -UUGG--UCCAAGG--------------UGGGGUCGUCCG |:|| :|| || |||||:| |||| AAGCCUUGGGCGCCAACUCUCCCUGCUUACCCCGGGAGGCA Trim8 rno-miR-429 233 266 -UGCCGUAA--UGG---------UCUGUCAUAAU :| ||| :|| :|||||||| GGCUGCAGGUGGCCCUGGAGCUGGGACAGUAUC- Trim8 rno-miR-483 186 224 -UGU------UCUGC-CCUCC----CC-UCC-UCACU- :|| :||:| ||||| || :|| ||||: UGCAUCUCCUGGAUGAGGAGGUGAUGGUGGGAAGUGGC Trim8 rno-miR-485 565 591 -CUUAAGU----AGUGCCGGUCGGAGA- ||:|||| ||| || |||||:| GGAGUUCAAGUCUCAA-GC-AGCCUUUG Trim8 rno-miR-540 380 411 -GGUCCUAG-------CUGGA--GACUGGA- ||:||| | | |||:||| CCCGGGAGGCAGCCCAGUGCCCGCUGGCCUA Trim8 rno-miR-664 438 473 -AUCCG-----------ACC-CCUCAUUUACUUAU- |:||| ||| |||||||| ||||: CUGGGCAGUUUGAUCACUGGUGGAGUAAA-GAAUGA Trim8 rno-miR-99b 221 245 GCGUUCCAG-CCAAGAUGCCCAC- || || || ||:| |||| GGCCUGGGCAGGGGCUGCAGGUGG Trim8 rno-let-7e 253 273 ugauaUGUUGGAGGAUGGAGU |||:: ||||| |||| ctgggACAGTATCCTAACTCA Trim8 rno-let-7f 251 273 UUGA-UAUGUUAGAUGAUGGAGU |:|| : |||:| | ||| |||| AGCTGGGACAGTATCCTAACTCA Trim8 rno-miR-103 216 239 aguauCGGGACAUGU-UACGACGa | |||| :|| : ||||| gaagtGGCCTGGGCAGGGGCTGCa Trim8 rno-miR-106b 272 290 uagaCGUGACAGUCGUGAAAU |||||| :|| ||||| caagGCACTG--GGCTCTTTA Trim8 rno-miR-107 216 239 acuauCGGGACAUGU-UACGACGa | |||| :|| : ||||| gaagtGGCCTGGGCAGGGGCTGCa Trim8 rno-miR-10b 221 242 uguguuuaagCCAAGAUGUCCc || ||:|||| ggcctgggcaGGGGCTGCAGGt Trim8 rno-miR-125a 207 234 guguCCA-AUUUC-CCAGA---GUCCCu ||| :||| || || ||||| tgatGGTGGGAAGTGGCCTGGGCAGGGg Trim8 rno-miR-127 243 268 uCGG---UUCGAGUCUG-CCUAGGcu ||| :|||| :||| | |||| gGCCCTGGAGCTGGGACAGTATCCta Trim8 rno-miR-129* 216 237 uacgaaaaacCCCAUUCCCGAa ||| |:||||| gaagtggcctGGGCAGGGGCTg Trim8 rno-miR-133a 339 365 UGUCGACCAACUUC----CCC-UGGUU |::||||| |||| ||| :|||| ATGGCTGGAAGAAGCCTTGGGCGCCAA Trim8 rno-miR-133b 340 365 AUCGACCAACUUC----CCC-UGGUU |:||||| |||| ||| :|||| TGGCTGGAAGAAGCCTTGGGCGCCAA Trim8 rno-miR-146 557 579 UUGG-GUACCUUAAG-UCAAGAGU |:|| |||||:||| || ||||| AGCCGGATGGAGTTCAAG-TCTCA Trim8 rno-miR-152 261 282 ggguucaagacaguaCGUGACu |||||| gtatcctaactcaagGCACTGg Trim8 rno-miR-17 265 290 uGAUGGA----CGUGACAUUCGUGAAAc ||| || |||||| :|| |||| cCTAACTCAAGGCACTG--GGCTCTTTa Trim8 rno-miR-181a* 4 25 ccauGUUAGUUGCCAGCUACCa ||: |||:|| || ||| caagCAGGCAATGGACGCTGGg Trim8 rno-miR-183 381 403 GUCACUUAAGAUGGUCACGGuau | | ||: |||||||| CCGGGAGGCAGCCCAGTGCCcgc Trim8 rno-miR-184 85 102 UGGGAAUAGUCAAGAGGCAGGu ||||| || ||||| ||| ACCCTCCTC---TCTCC-TCCt Trim8 rno-miR-185 81 99 cuugacGGA-AAGAGAGGu ||| ||||||| ctccacCCTCCTCTCTCCt Trim8 rno-miR-185 95 117 cuuGACGGAAAG-AGAGGU----- || |||||| |||||| ctcCT-CCTTTCTTCTCCATTCCT Trim8 rno-miR-199a 256 283 CUUGUCCAUCAGACU------UGUGACCC |:||| ||| || | :||||||| GGACA-GTATCCTAACTCAAGGCACTGGG Trim8 rno-miR-199a 226 251 CUUGUCCAUCAGAC-----UUGUGACCc |::|||| | ||| ::| |||| GGGCAGG--GGCTGCAGGTGGCCCTGGa Trim8 rno-miR-207 194 220 uuCC--CUCCUCU-CGGUC-CUCUUCg || ||||||: | ::| |:|||| ctGGATGAGGAGGTGATGGTGGGAAGt Trim8 rno-miR-207 230 256 UUCCC----UCCUCUCGGUCCUCuucg |:||| ||| |: || |||| AGGGGCTGCAGGTGGCCCTGGAGctgg Trim8 rno-miR-20a 266 290 GAUGGA----CGUGAUAUUCGUGAAAU ||| || |||| |::|| ||||| CTAACTCAAGGCAC--TGGGCTCTTTA Trim8 rno-miR-212 243 264 CCGGCAC--UGACCUCUGACAau |||| || :|||| ||| || GGCCCTGGAGCTGG-GACAGTat Trim8 rno-miR-214 389 406 GACGGACAGACACGGACGACa | ||| | ||||| |||| CAGCC---CAGTGCCCGCTGg Trim8 rno-miR-217 440 464 uagGUCAGUCAAG-GACUACGUCAU ||||: | || |||:|| |||| gggCAGTTTGATCACTGGTGGAGTA Trim8 rno-miR-28 270 289 GAGUUAUCUGACACUCGAGGAA |||| ||:| ||:||||:|| CTCA--AGGCACTGGGCTCTTT Trim8 rno-miR-296 223 248 uGUCCUAACUCC-----CCCCCGGGA | ||: |:|| || |||||| cCTGGGCAGGGGCTGCAGGTGGCCCT Trim8 rno-miR-296 204 226 ugucCUAACUCCC--CCCCGGga ||| | ||| | |||| aggtGATGGTGGGAAGTGGCCtg Trim8 rno-miR-298 383 407 CCUUCUUGUCGGG--A--GGAGACgg ||:|| :|||||| | || ||| GGGAG-GCAGCCCAGTGCCCGCTGgc Trim8 rno-miR-324-3p 216 234 ggUCGUCGUGGACCCCGUCACC ||::| ||| |||||| || gaAGTGG--CCT-GGGCAGGGG Trim8 rno-miR-324-5p 213 239 uguggUUACGGGA----UCCCCUACGc |:|| ||| ||||| ||| tgggaAGTGGCCTGGGCAGGGGCTGCa Trim8 rno-miR-326 234 253 uGACCUCCUUCCCGGGUCUCc ||| ||| || ||::||| gCTGCAGG-TGGCCCTGGAGc Trim8 rno-miR-328 213 237 ugCCUUC-CCG--UCUCUCCCGGuc ||||| ||| :|: |||| | tgGGAAGTGGCCTGGGCAGGGGCtg Trim8 rno-miR-331 217 235 aagAUCCUAUCCGGGUCCCCG |:| |:|| ||||||| aagTGGCCTGGG--CAGGGGC Trim8 rno-miR-337 230 257 UUUCCGUAGUAUAU-----CCUCGACuu |::||| || :|: ||||||| AGGGGCTGCAGGTGGCCCTGGAGCTGgg Trim8 rno-miR-339 217 234 acucgaGGACCUCCUGUCCCu ||| ||:||||| aagtggCCT---GGGCAGGGg Trim8 rno-miR-339 242 264 ACUCGAGGACCU----CCUGUCccu || || |||||| |||||| TG-GC-CCTGGAGCTGGGACAGtat Trim8 rno-miR-340 243 262 CCGAUAUUUCAUUGACUCUGCCu ||| |::|| |||:||| | GGCCCTGGAG---CTGGGACAGt Trim8 rno-miR-343 437 463 AGACCCGU-------GUGCCUCCCUCu |||||||| ||| |: |||| TCTGGGCAGTTTGATCACTGGTGGAGt Trim8 rno-miR-345 216 239 CGUGACCUGAUC---CCCAGUCGU | | ||| ||:| ||| | ||| GAAGTGGCCTGGGCAGGGGCTGCA Trim8 rno-miR-346 215 234 uCUCCGUCCGUGAGUCCGUCugu || |: ||| || :||||| gGAAGT-GGC-CT-GGGCAGggg Trim8 rno-miR-347 238 260 acCCGCUGGG-UCU---CCCUGU ||:|:||| :|| |||||| caGGTGGCCCTGGAGCTGGGACA Trim8 rno-miR-349 215 237 uCUCCAAUUCUG--UCGU-CCCGAC || || :| | :||| |||||| gGAAGT--GGCCTGGGCAGGGGCTG Trim8 rno-miR-351 209 234 guCCGAGUUUC-CCGAGGA---GUCCCu ||: :||| || ||| ||||| atGGTGGGAAGTGG--CCTGGGCAGGGg Trim8 rno-miR-363-5p 55 89 uUUA--ACGU-AG-CACU---------AGGUGGGc ||| |||| || | || ||||||| gAATTATGCATTCAGAGACCGGCCCTCTCCACCCt Trim8 rno-miR-370 369 389 uuGGUCCAAGGUGGGGUCGUCCG || | || |||||:| |||| tcCCTGCTT--ACCCCGGGAGGC Trim8 rno-miR-429 241 266 ugCCGUAA--UGG--UCUGUCAUAau ||| | | | :|||||||| gtGGCCCTGGAGCTGGGACAGTATcc Trim8 rno-miR-483 188 209 uguucuGCCCUCCCCUCCU-CACU | ||| ||||| |||| catctcCTGGA--TGAGGAGGTGA Trim8 rno-miR-485 566 589 CUUAAGU--AGUGCCGGUCGGAGA ||:|||| || | ||||||:| GAGTTCAAGTCTCAAGCAGCCTTT Trim8 rno-miR-540 393 409 GGUCCUAGCUGGAGACUGGA |||| :| || |||:||| CCAG---TGCCCGCTGGCCT Trim8 rno-miR-664 450 471 auccGACC-CCUCAUUUACUUAu |||| ||||| || |||| atcaCTGGTGGAGT-AAAGAATg Trim8 rno-miR-18 591 598 A-----------------UAGA---CGU--GAUCUACGUGGAAU :||| ||| || ||||||| CAGCCGGAUGGAGUUCAAGUCUCAAGCAGCCUUUG-GCACCUUC Trim8 rno-miR-185 92 99 CUUGAC------------------------GGAA-AGAGAGGU ||| ||||||| AUUAUGCAUUCAGAGACCGGCCCUCUCCACCCUCCUCUCUCCU Trim8 rno-miR-363-5p 82 89 UUUA----------ACGUAGCACU-----------AGGUGGGC |||||: || ||||||| UGGCUCGGGAAUUAUGCAUUCAGAGACCGGCCCUCUCCACCCU

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Trim8 RAID00163480 rno-miR-665 miRNA MIMAT0012844 Trim8 mRNA 688785 Prediction 0.1828 Trim8 RAID00233951 rno-miR-182 miRNA MIMAT0005300 Trim8 mRNA 688785 Prediction 0.2202 Trim8 RAID00399535 rno-miR-3594-5p miRNA MIMAT0017898 Trim8 mRNA 688785 Prediction 0.1828 Trim8 RAID00514281 rno-miR-18a-5p miRNA MIMAT0000787 Trim8 mRNA 688785 Prediction 0.1828 Trim8 RAID00985781 rno-miR-126a-5p miRNA MIMAT0000831 Trim8 mRNA 688785 Prediction 0.1828 Trim8 RAID01344773 rno-miR-664-3p miRNA MIMAT0003382 Trim8 mRNA 688785 Prediction 0.1828 Trim8 RAID01722057 rno-miR-3561-3p miRNA MIMAT0017831 Trim8 mRNA 688785 Prediction 0.1828 Trim8 RAID01909352 rno-miR-382-3p miRNA MIMAT0003202 Trim8 mRNA 688785 Prediction 0.1828 Trim8 RAID02317160 rno-miR-551b-5p miRNA MIMAT0017335 Trim8 mRNA 688785 Prediction 0.1828 Trim8 RAID03934423 rno-miR-3584-5p miRNA MIMAT0017875 Trim8 mRNA 688785 Prediction 0.1828