DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000547 rno-miR-322* 293497 Kctd13 acaACGUCG-CGAAGUACAAa | || | |:||||| || aucUUCAUCUGUUUCAUAUUa 2 18 450 470 [rn4:1:186122771-186122791:+] 0.6223 124 0 -7.57 -0.1009 MIMAT0000577 rno-miR-337 293497 Kctd13 uuuCCGUAGUAUAUCCUCGACUu || || | :| ||||||| auuGGAAUAAAGU-UGAGCUGAa 2 21 498 519 [rn4:1:186122819-186122840:+] 0.6223 150 7 -14.79 -1.2080 MIMAT0004728 rno-miR-124* 293497 Kctd13 uaguuccagGCGACACUUGUGc | | ||||||| auuuguuaaCACAUUGAACACa 2 14 286 307 [rn4:1:186122607-186122628:+] 0.5214 141 7 -9.01 -1.0413 MIMAT0004743 rno-miR-300-5p 293497 Kctd13 uguuuccuauuggaGAGAAGUu ||||||| acccucugguggggCUCUUCAg 2 9 177 198 [rn4:1:186122498-186122519:+] 0.5214 140 7 -19.10 -0.1057 MIMAT0001320 rno-miR-421 293497 Kctd13 guUGUUUG--UAAA--UUACUCCGg || | | :||| |||||||| uuACCAUCUGGUUUAGAAUGAGGCa 2 20 247 271 [rn4:1:186122568-186122592:+] 0.5214 149 7 -15.44 -0.8144 MIMAT0003207 rno-miR-369-3p 293497 Kctd13 uuucuAGU-UGGUACAUAAUAa ||| |::|| |||||| cuguuUCAUAUUAUUUAUUAUu 2 17 458 479 [rn4:1:186122779-186122800:+] 0.6223 131 6 -7.11 -0.5093 MIMAT0003209 rno-miR-363* 293497 Kctd13 uuuaacguagCACUAGGUGGGc ||| ||||||| cagaaagccaGUG-UCCACCCu 2 13 196 216 [rn4:1:186122517-186122537:+] 0.5214 146 7 -18.53 -0.1527 MIMAT0005308 rno-miR-380 293497 Kctd13 gcguacaagAUACCAGUUGGUa || ||||||| aggagacagUACCAUCAACCAu 2 14 316 337 [rn4:1:186122637-186122658:+] 0.5719 141 7 -11.47 -0.7133 MIMAT0005327 rno-miR-672 293497 Kctd13 aguguGUGUCAUGUG--GUUGGAGu ||| | | | ||||||| gugucCACCCUCCUCCACAACCUCg 2 19 206 230 [rn4:1:186122527-186122551:+] 0.5214 145 7 -17.77 -0.4714 MIMAT0012851 rno-miR-547 293497 Kctd13 gagugaaUUUCU-UCAUGGUu ::||| ||||||| uguagaaGGAGACAGUACCAu 2 14 310 330 [rn4:1:186122631-186122651:+] 0.5719 148 7 -13.31 -0.5019 MIMAT0001619 rno-miR-322 293497 Kctd13 agguUUUGUACUU--A-ACGACGAc :|:| |||| | ||||||| aguuGAGC-UGAAGGUCUGCUGCUg 2 19 508 531 [rn4:1:186122829-186122852:+] 0.6223 146 7 -19.04 -0.2375 MIMAT0000606 rno-miR-7a 293497 Kctd13 ugUUGUUUUAGUGAUCAGAAGGu ::| ||:||:: :||||||| cuGGCCAAGUCGUGGGUCUUCCc 2 22 69 91 [rn4:1:186122390-186122412:+] 0.5815 165 7 -19.40 -0.1304 MIMAT0000780 rno-miR-7b 293497 Kctd13 ugUUGUUUUAGUGUUCAGAAGGu ::| ||:||::::||||||| cuGGCCAAGUCGUGGGUCUUCCc 2 22 69 91 [rn4:1:186122390-186122412:+] 0.5815 169 7 -22.41 -0.1304 MIMAT0000784 rno-miR-15b 293497 Kctd13 acAUUUGG-UACUACACGACGAu |:|:|: | |:| ||||||| guUGAGCUGAAGGUCUGCUGCUg 2 21 509 531 [rn4:1:186122830-186122852:+] 0.6223 159 7 -17.35 -0.2418 MIMAT0000785 rno-miR-16 293497 Kctd13 gcgguuauaaaugcACGACGAu ||||||| uugagcugaaggucUGCUGCUg 2 9 510 531 [rn4:1:186122831-186122852:+] 0.6223 140 7 -13.67 -0.2418 MIMAT0000836 rno-miR-130a 293497 Kctd13 uaCGGGAAAAUU--GUAAC-GUGAc ||||| | | ||||| |||| gaGCCCUCUCCAGUCAUUGCCACUc 2 21 122 146 [rn4:1:186122443-186122467:+] 0.5214 127 0 -18.19 -0.4507 MIMAT0000837 rno-miR-130b 293497 Kctd13 uaCGGGAAAG--UAGUAAC-GUGAc ||||| || :|||||| |||| gaGCCCUCUCCAGUCAUUGCCACUc 2 21 122 146 [rn4:1:186122443-186122467:+] 0.5214 139 0 -22.25 -0.4441 MIMAT0000849 rno-miR-143 293497 Kctd13 acUCGAUGUC-A-CGAAGUAGAgu |||| |:| | |||||||| ccAGCU-CGGCUAUCUUCAUCUgu 3 21 439 461 [rn4:1:186122760-186122782:+] 0.6223 136 0 -16.79 -0.1350 MIMAT0000859 rno-miR-181b 293497 Kctd13 ugGGUGGCUGUCGUUACU-UACAa || |: |: || |||| |||| auCCCCUCAUUGC-AUGAUAUGUu 2 22 95 117 [rn4:1:186122416-186122438:+] 0.5214 123 0 -15.43 -0.3844 MIMAT0000868 rno-miR-193 293497 Kctd13 ugaccCUGAAACAUCCGG-UCAa |:|| || |||| ||| gccccGGCUCUGCUGGCCAAGUc 2 18 57 79 [rn4:1:186122378-186122400:+] 0.5815 121 0 -15.75 -0.1812 MIMAT0000870 rno-miR-195 293497 Kctd13 cgguuauaaagACACGACGAu | ||||||| ugagcugaaggUCUGCUGCUg 2 11 511 531 [rn4:1:186122832-186122852:+] 0.6223 142 7 -14.73 -0.2418 MIMAT0000879 rno-miR-206 293497 Kctd13 ggUGUGUGAAGGAAUGUAAGGu || ||| | |||||||| uaAC-CAC-ACGGUACAUUCCa 2 21 152 171 [rn4:1:186122473-186122492:+] 0.5214 148 7 -24.66 -0.6039 MIMAT0003125 rno-miR-1 293497 Kctd13 uaUGUGUGAAGAAAUGUAAGGu || ||| | |||||||| uaAC-CAC-ACGGUACAUUCCa 2 21 152 171 [rn4:1:186122473-186122492:+] 0.5214 148 7 -20.06 -0.6039 MIMAT0003193 rno-miR-494 293497 Kctd13 uccaaagggcacauACAAAGu |||||| cggcuaucuucaucUGUUUCa 2 8 445 465 [rn4:1:186122766-186122786:+] 0.6223 120 6 -8.65 -0.5490 MIMAT0003208 rno-miR-374 293497 Kctd13 guGAA-UCGUCCAA-CAUAAUAua ||| | | | || |||||| auCUUCAUCUGUUUCAUAUUAUuu 3 21 450 473 [rn4:1:186122771-186122794:+] 0.6223 130 0 -3.09 -0.2716 MIMAT0003383 rno-miR-497 293497 Kctd13 auGUUUGG-UGUCACACGACGAc ::|:|: | :|| ||||||| guUGAGCUGAAGGUCUGCUGCUg 2 21 509 531 [rn4:1:186122830-186122852:+] 0.6223 155 7 -19.73 -0.2418

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Kctd13 RAID00071049 rno-miR-195-5p miRNA MIMAT0000870 Kctd13 mRNA 293497 Prediction 0.1828 Kctd13 RAID00104990 rno-miR-653-5p miRNA MIMAT0012838 Kctd13 mRNA 293497 Prediction 0.1828 Kctd13 RAID00223705 rno-miR-130a-3p miRNA MIMAT0000836 Kctd13 mRNA 293497 Prediction 0.1828 Kctd13 RAID00224795 rno-miR-181b-5p miRNA MIMAT0000859 Kctd13 mRNA 293497 Prediction 0.1828 Kctd13 RAID00257216 rno-miR-7a-5p miRNA MIMAT0000606 Kctd13 mRNA 293497 Prediction 0.2202 Kctd13 RAID00427402 rno-miR-1b miRNA MIMAT0037263 Kctd13 mRNA 293497 Prediction 0.1828 Kctd13 RAID00459954 rno-miR-124-5p miRNA MIMAT0004728 Kctd13 mRNA 293497 Prediction 0.1828 Kctd13 RAID00614516 rno-miR-16-5p miRNA MIMAT0000785 Kctd13 mRNA 293497 Prediction 0.1828 Kctd13 RAID00648021 rno-miR-497-5p miRNA MIMAT0003383 Kctd13 mRNA 293497 Prediction 0.1828 Kctd13 RAID00897774 rno-miR-494-3p miRNA MIMAT0003193 Kctd13 mRNA 293497 Prediction 0.1828 Kctd13 RAID00970285 rno-miR-702-5p miRNA MIMAT0017884 Kctd13 mRNA 293497 Prediction 0.1828 Kctd13 RAID01626791 rno-miR-322-5p miRNA MIMAT0001619 Kctd13 mRNA 293497 Prediction 0.1828 Kctd13 RAID01649327 rno-miR-365-5p miRNA MIMAT0017184 Kctd13 mRNA 293497 Prediction 0.1828 Kctd13 RAID02026619 rno-miR-193a-3p miRNA MIMAT0000868 Kctd13 mRNA 293497 Prediction 0.1828 Kctd13 RAID02159172 rno-miR-206-3p miRNA MIMAT0000879 Kctd13 mRNA 293497 Prediction 0.2202 Kctd13 RAID02464243 rno-miR-1-3p miRNA MIMAT0003125 Kctd13 mRNA 293497 Prediction 0.2202 Kctd13 RAID02813156 rno-miR-15b-5p miRNA MIMAT0000784 Kctd13 mRNA 293497 Prediction 0.1828 Kctd13 RAID02853153 rno-miR-7b miRNA MIMAT0000780 Kctd13 mRNA 293497 Prediction 0.2202 Kctd13 RAID03001096 rno-miR-764-3p miRNA MIMAT0017370 Kctd13 mRNA 293497 Prediction 0.1828 Kctd13 RAID03243520 rno-miR-130b-3p miRNA MIMAT0000837 Kctd13 mRNA 293497 Prediction 0.1828 Kctd13 RAID04034562 rno-miR-374-5p miRNA MIMAT0003208 Kctd13 mRNA 293497 Prediction 0.1828 Kctd13 RAID04065077 rno-miR-143-3p miRNA MIMAT0000849 Kctd13 mRNA 293497 Prediction 0.1828