DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000568 rno-miR-330* 309457 Pcgf6 agaGACGUCCGG--GACACGAAACg || :|| | :| ||||||| gucCUUUAGAACAGUUUUGCUUUGa 2 21 339 363 [rn4:1:252358605-252358629:-] 0.5612 147 7 -13.24 -1.1510 MIMAT0000570 rno-miR-331 309457 Pcgf6 aagauccUAUCCGGGUCCCCg ||| |:|||||| aacauucAUA-ACUCAGGGGa 2 15 182 201 [rn4:1:252358767-252358786:-] 0.5612 132 6 -17.79 -0.1877 MIMAT0004645 rno-miR-148b-5p 309457 Pcgf6 ggacucacauauuguCUUGAAg |||||| uuccuguccuauucuGAACUUa 2 8 414 435 [rn4:1:252358533-252358554:-] 0.5612 120 6 -13.42 -0.1155 MIMAT0004709 rno-miR-10a-3p 309457 Pcgf6 auaaggggaucuaugCUUAAAc |||||| caacuguuuuguaaaGAAUUUa 2 8 908 929 [rn4:1:252358039-252358060:-] 0.5622 120 6 -5.36 -0.1377 MIMAT0004714 rno-miR-26b* 309457 Pcgf6 cucgguuCAUUACCUCUUGUCc || | ||||||| gguggguGUCCUUUAGAACAGu 2 16 332 353 [rn4:1:252358615-252358636:-] 0.5612 143 7 -12.19 -0.8324 MIMAT0004718 rno-miR-29a* 309457 Pcgf6 gacuuguggUUUUCUUUAGUCa | || ||||||| gucauuuggAUAAAAAAUCAGa 2 14 729 750 [rn4:1:252358218-252358239:-] 0.5622 149 7 -10.74 -1.0931 MIMAT0004719 rno-miR-30c-1* 309457 Pcgf6 ccucauuugUUGGGAGAGGGUc || :||||||| aucacaccaAAGAUUCUCCCAg 2 14 38 59 [rn4:1:252358909-252358930:-] 0.5612 145 7 -19.94 -0.6410 MIMAT0004720 rno-miR-30e* 309457 Pcgf6 cgacauuuguaggcUGACUUUc ||||||| acucaggggaaaaaACUGAAAa 2 9 192 213 [rn4:1:252358755-252358776:-] 0.5612 140 7 -6.58 -1.1970 MIMAT0004722 rno-miR-30d* 309457 Pcgf6 cgucguuuguagacUGACUUUc ||||||| acucaggggaaaaaACUGAAAa 2 9 192 213 [rn4:1:252358755-252358776:-] 0.5612 140 7 -11.25 -1.1970 MIMAT0000809 rno-miR-30a* 309457 Pcgf6 cgacguuuguaggcUGACUUUc ||||||| acucaggggaaaaaACUGAAAa 2 9 192 213 [rn4:1:252358755-252358776:-] 0.5612 140 7 -10.25 -1.1970 MIMAT0000809 rno-miR-30a* 309457 Pcgf6 cgaCGUU-UGUAGGCUG-ACUUUc |||| :::| | || ||||| cuaGCAAUGUGUACAACUUGAAAc 2 20 121 144 [rn4:1:252358824-252358847:-] 0.5612 122 0 -6.92 -1.0226 MIMAT0005442 rno-miR-30c-2* 309457 Pcgf6 ucucauuugucggAAGAGGGUc |||||||| aucacaccaaagaUUCUCCCAg 2 10 38 59 [rn4:1:252358909-252358930:-] 0.5612 145 7 -18.85 -0.6410 MIMAT0000831 rno-miR-126* 309457 Pcgf6 gcgcAUGGUUUUC--AU-UAUUAc |||||:||| || ||||| gaauUACCAGAAGUUUACAUAAUc 2 18 646 669 [rn4:1:252358299-252358322:-] 0.5622 132 0 -12.92 -0.8166 MIMAT0000831 rno-miR-126* 309457 Pcgf6 gcgcAUGGUU-UUCAUUAUUac | |::| | |||||| ccucUUCUGACAUUUAAUAAaa 3 18 945 966 [rn4:1:252358002-252358023:-] 0.5622 124 0 -1.01 -0.1069 MIMAT0004738 rno-miR-199a-3p 309457 Pcgf6 auugguuacacgUCUGAUGACa | ||||||| cacucagcaccaAAACUACUGg 2 11 381 402 [rn4:1:252358566-252358587:-] 0.5612 142 7 -12.01 -0.4413 MIMAT0001547 rno-miR-450a 309457 Pcgf6 guaauccuuguGUAGCGUUUUu ||| |||||| uagacuuauuuCAUAGCAAAAu 2 12 843 864 [rn4:1:252358104-252358125:-] 0.5622 123 6 -6.74 -0.1459 MIMAT0003174 rno-miR-540 309457 Pcgf6 gguccUAGCUGGAGACUGga | | |:|||||| acauaAACCUCUUCUGACau 3 16 938 957 [rn4:1:252358011-252358030:-] 0.5622 127 0 -13.18 -0.1035 MIMAT0004787 rno-miR-543 309457 Pcgf6 cgcUUUUUGUGCGCCCGUUGAa |:| :|| : ||||||| auuAGACUUACAUUGGCAACUg 2 20 892 913 [rn4:1:252358055-252358076:-] 0.5622 151 7 -12.43 -1.1267 MIMAT0004791 rno-miR-379* 309457 Pcgf6 caaucaccugguacAAUGUAUc ||||||| gaauuaccagaaguUUACAUAa 2 9 646 667 [rn4:1:252358301-252358322:-] 0.5622 140 7 -8.73 -1.0026 MIMAT0004791 rno-miR-379* 309457 Pcgf6 caaucaccugguacaAUGUAUc |||||| agaauuuaugaauugUACAUAa 2 8 922 943 [rn4:1:252358025-252358046:-] 0.5622 120 6 -5.97 -0.1256 MIMAT0005330 rno-miR-674-3p 309457 Pcgf6 aaCAA-GACUCUACCCUC-GACAc ||| || || | ||| |||| cuGUUACUCAGCUCUGAGACUGUu 2 21 464 487 [rn4:1:252358481-252358504:-] 0.5612 123 0 -12.68 -0.1068 MIMAT0012822 rno-miR-202 309457 Pcgf6 uuUCUUCAUAUACGUAUCCUu ||| ||| | ||||| | auAGACUUAU-UUCAUAGCAa 2 20 842 861 [rn4:1:252358107-252358126:-] 0.5622 125 0 -6.10 -0.1703 MIMAT0012824 rno-miR-513 309457 Pcgf6 uacuuucUGUGGAAGAACACUu | | :| ||||||| gaauuuuAAAAUUCCUUGUGAu 2 16 219 240 [rn4:1:252358728-252358749:-] 0.5612 147 7 -10.07 -0.8519 MIMAT0012833 rno-miR-582 309457 Pcgf6 ucauugaccAACUUGUUGACAu ||| :||||||| agacuuacaUUG-GCAACUGUu 2 14 895 915 [rn4:1:252358053-252358073:-] 0.5622 147 7 -13.61 -0.7719 MIMAT0012848 rno-miR-294 309457 Pcgf6 ucuaucccgGAGGUAAAACuc | ::|||||| acuuguaaaCAUUAUUUUGcc 3 13 783 803 [rn4:1:252358165-252358185:-] 0.5622 124 0 -5.48 -0.1087 MIMAT0012850 rno-miR-465 309457 Pcgf6 guGU-GGUCGUGGCAAGAUUUau || || | | ||||||| agCAUCCUGAUGCUUUCUAAAau 3 21 811 833 [rn4:1:252358135-252358157:-] 0.5622 131 0 -11.17 -0.1024 MIMAT0012852 rno-miR-667 309457 Pcgf6 gaacccGACCCACCGUCCACAGu |||| | |||||||| gugccaCUGG--GACAGGUGUCa 2 18 561 581 [rn4:1:252358387-252358407:-] 0.4619 154 7 -27.31 -0.1498 MIMAT0000560 rno-miR-326 309457 Pcgf6 ugaccuccuucccGGGUCUCc ||||||| caccaaagauucuCCCAGAGc 2 9 42 62 [rn4:1:252358906-252358926:-] 0.5612 140 7 -13.37 -0.6461 MIMAT0004641 rno-miR-330 309457 Pcgf6 cgGAUUCUGUGUCCGGGUCUCu | ||||: | ||||||| acCAAAGAUUC--UCCCAGAGc 2 21 43 62 [rn4:1:252358906-252358925:-] 0.5612 149 7 -21.16 -0.6461 MIMAT0004650 rno-miR-340-5p 309457 Pcgf6 uuagucagaguaacGAAAUAUu :|||||| uuucuaaaauaaaaUUUUAUAg 2 9 824 845 [rn4:1:252358123-252358144:-] 0.5622 124 6 -4.49 -0.1414 MIMAT0000606 rno-miR-7a 309457 Pcgf6 ugUUGUUUUAGUGAUCA--GAAGGu :| :||:|::||:|| ||||| auGAGGAAGUUGCUGGUUGCUUCCc 2 22 248 272 [rn4:1:252358696-252358720:-] 0.5612 121 0 -16.09 -0.2017 MIMAT0000608 rno-miR-351 309457 Pcgf6 aguccgaguuucccgagGAGUCCCu ||||||| guaaaaaacauucauaaCUCAGGGg 2 9 176 200 [rn4:1:252358768-252358792:-] 0.5612 140 7 -17.40 -1.1003 MIMAT0000781 rno-miR-9 309457 Pcgf6 aguAUGUCGAU-C-UA-U-UGGUUUCu |:||| |: | || | ||||||| uucUGCAGAUGUGCAUCACACCAAAGa 2 21 24 50 [rn4:1:252358918-252358944:-] 0.5612 148 7 -16.24 -0.5851 MIMAT0000788 rno-miR-19b 309457 Pcgf6 agucaaAACGUACCUAAACG-UGu | | ||| |||||| || aaacaaUAGAAUGUAUUUGCUACa 2 18 141 164 [rn4:1:252358804-252358827:-] 0.5612 125 0 -10.72 -1.0475 MIMAT0000789 rno-miR-19a 309457 Pcgf6 agucaaAACGUAUCUAAACG-UGu | | ||: |||||| || aaacaaUAGAAUGUAUUUGCUACa 2 18 141 164 [rn4:1:252358804-252358827:-] 0.5612 121 0 -9.29 -1.0475 MIMAT0000796 rno-miR-26a 309457 Pcgf6 ucggauaggacCU-AAUGAACuu || ||||||| cuuuucacaaaGACUUACUUGua 3 12 767 789 [rn4:1:252358179-252358201:-] 0.5622 126 0 -8.85 -0.1296 MIMAT0000796 rno-miR-26a 309457 Pcgf6 ucggauaggaccuaaUGAACUu |||||| cuagcaauguguacaACUUGAa 2 8 121 142 [rn4:1:252358826-252358847:-] 0.5612 120 6 -10.01 -0.1001 MIMAT0000797 rno-miR-26b 309457 Pcgf6 uggauaggaCUUAAUGAACuu || ||||||| uuucacaaaGACUUACUUGua 3 13 769 789 [rn4:1:252358179-252358199:-] 0.5622 132 0 -8.73 -0.1296 MIMAT0000797 rno-miR-26b 309457 Pcgf6 uggauaggacuuaaUGAACUu |||||| uagcaauguguacaACUUGAa 2 8 122 142 [rn4:1:252358826-252358846:-] 0.5612 120 6 -8.20 -0.1001 MIMAT0000829 rno-miR-125a-5p 309457 Pcgf6 aguguccaauuucccaGAGUCCCu ||||||| uaaaaaacauucauaaCUCAGGGg 2 9 177 200 [rn4:1:252358768-252358791:-] 0.5612 140 7 -16.11 -1.0956 MIMAT0000830 rno-miR-125b-5p 309457 Pcgf6 aguguucaaucccaGAGUCCCu ||||||| aaaaacauucauaaCUCAGGGg 2 9 179 200 [rn4:1:252358768-252358789:-] 0.5612 140 7 -16.97 -1.0956 MIMAT0000838 rno-miR-132 309457 Pcgf6 gcugguacCGACA-UCUGACAAu ||| | |||||||| guuacucaGCUCUGAGACUGUUa 2 15 466 488 [rn4:1:252358480-252358502:-] 0.5612 153 7 -18.92 -0.4318 MIMAT0000840 rno-miR-134 309457 Pcgf6 ggGGAG--ACCAGUUGGUCAGUGu |||| || |: :||||||| auCCUCAUUGUUUCUUCAGUCACu 2 21 667 690 [rn4:1:252358278-252358301:-] 0.5622 155 7 -22.22 -1.1021 MIMAT0000857 rno-miR-181c 309457 Pcgf6 ugaguggcuguccaaCUUACAa |||||| caacuugaaacaauaGAAUGUa 2 8 134 155 [rn4:1:252358813-252358834:-] 0.5612 120 6 -7.91 -0.1502 MIMAT0000858 rno-miR-181a 309457 Pcgf6 ugaguggcugucgcaaCUUACAa |||||| acaacuugaaacaauaGAAUGUa 2 8 133 155 [rn4:1:252358813-252358835:-] 0.5612 120 6 -8.79 -0.1487 MIMAT0000859 rno-miR-181b 309457 Pcgf6 ugGGUGGCUGUCGUUA-CUUACAa | ||: : | |||| |||||| uaCAACUUGAAACAAUAGAAUGUa 2 22 132 155 [rn4:1:252358813-252358836:-] 0.5612 129 6 -12.49 -1.1467 MIMAT0000869 rno-miR-194 309457 Pcgf6 agguguaccucaaCGACAAUGu |||||||| auacuacuacagcGCUGUUACu 2 10 450 471 [rn4:1:252358497-252358518:-] 0.5612 145 7 -15.80 -0.1914 MIMAT0000872 rno-miR-199a-5p 309457 Pcgf6 cuuguccaucagacUUGUGACcc ||||||| ggaaaaaacugaaaAACACUGaa 3 10 199 221 [rn4:1:252358747-252358769:-] 0.5612 125 0 -11.89 -0.2248 MIMAT0000883 rno-miR-212 309457 Pcgf6 acCGGCACUGA--C----CUCUGACAAu ||:|| ||| | ||||||||| gcGCUGUUACUCAGCUCUGAGACUGUUa 2 21 461 488 [rn4:1:252358480-252358507:-] 0.5612 154 7 -21.77 -0.4350 MIMAT0003194 rno-miR-376c 309457 Pcgf6 ugcacuuuaaaggaGAUACAa |||||| ugcuacacuaaagaCUAUGUa 2 8 158 178 [rn4:1:252358790-252358810:-] 0.5612 120 6 -6.25 -0.1326 MIMAT0003199 rno-miR-381 309457 Pcgf6 cucucgaacggGAACAUau |||||| acaaagacuuaCUUGUAaa 3 9 773 791 [rn4:1:252358177-252358195:-] 0.5622 120 0 -9.30 -0.1261 MIMAT0003201 rno-miR-382 309457 Pcgf6 gcuuagGUGGUGCUUGUUGAAg || :::| ||||||| cccuagCAAUGUGUACAACUUg 2 17 119 140 [rn4:1:252358828-252358849:-] 0.5612 152 7 -11.88 -0.6964 MIMAT0005299 rno-miR-181d 309457 Pcgf6 ugGGUGGCUGUUGUUA-CUUACAa | ||: : |||||| |||||| uaCAACUUGAAACAAUAGAAUGUa 2 22 132 155 [rn4:1:252358813-252358836:-] 0.5612 137 6 -14.67 -1.1446 MIMAT0005300 rno-miR-182 309457 Pcgf6 gccACACUCAAGAUGGUAACGGUUu ||| | :||:: ||||| | acuUGUAAACAUUAUU-UUGCCUAa 2 23 783 806 [rn4:1:252358162-252358185:-] 0.5622 120 0 -8.28 -0.1062 MIMAT0005335 rno-miR-758 309457 Pcgf6 ccaaUCACCUGGUC--CAGUGUUu | |||: ||| ||||||| ugccACUGGGACAGGUGUCACAAa 2 19 562 585 [rn4:1:252358383-252358406:-] 0.4619 157 7 -20.45 -0.1721 MIMAT0005339 rno-miR-873 309457 Pcgf6 uccucUGAGUGUUCAAGGACg |||:||| ||||||| uggccACUUACAUGUUCCUGu 2 17 400 420 [rn4:1:252358548-252358568:-] 0.5612 168 7 -23.79 -0.8461

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G055023 Pcgf6 Rattus norvegicus 309457

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Pcgf6 RAID00610800 rno-miR-19b-3p miRNA MIMAT0000788 Pcgf6 mRNA 309457 Prediction 0.1828 Pcgf6 RAID00781679 rno-miR-340-5p miRNA MIMAT0004650 Pcgf6 mRNA 309457 Prediction 0.1828 Pcgf6 RAID00909362 rno-let-7g-3p miRNA MIMAT0035720 Pcgf6 mRNA 309457 Prediction 0.1828 Pcgf6 RAID00944509 rno-miR-9a-5p miRNA MIMAT0000781 Pcgf6 mRNA 309457 Prediction 0.2381 Pcgf6 RAID01006863 rno-miR-3585-5p miRNA MIMAT0017878 Pcgf6 mRNA 309457 Prediction 0.1828 Pcgf6 RAID01144288 rno-miR-125a-5p miRNA MIMAT0000829 Pcgf6 mRNA 309457 Prediction 0.2202 Pcgf6 RAID01179667 rno-miR-134-5p miRNA MIMAT0000840 Pcgf6 mRNA 309457 Prediction 0.1828 Pcgf6 RAID01201481 rno-miR-132-3p miRNA MIMAT0000838 Pcgf6 mRNA 309457 Prediction 0.1828 Pcgf6 RAID01237547 rno-miR-26b-5p miRNA MIMAT0000797 Pcgf6 mRNA 309457 Prediction 0.1828 Pcgf6 RAID01550031 rno-miR-181b-5p miRNA MIMAT0000859 Pcgf6 mRNA 309457 Prediction 0.1828 Pcgf6 RAID01656364 rno-miR-873-5p miRNA MIMAT0005339 Pcgf6 mRNA 309457 Prediction 0.2202 Pcgf6 RAID01715198 rno-miR-181c-5p miRNA MIMAT0000857 Pcgf6 mRNA 309457 Prediction 0.1828 Pcgf6 RAID01860458 rno-miR-758-3p miRNA MIMAT0005335 Pcgf6 mRNA 309457 Prediction 0.1828 Pcgf6 RAID01954267 rno-miR-743b-5p miRNA MIMAT0017288 Pcgf6 mRNA 309457 Prediction 0.1828 Pcgf6 RAID02001695 rno-miR-33-3p miRNA MIMAT0017104 Pcgf6 mRNA 309457 Prediction 0.1828 Pcgf6 RAID02095555 rno-miR-7a-5p miRNA MIMAT0000606 Pcgf6 mRNA 309457 Prediction 0.1828 Pcgf6 RAID02209491 rno-miR-329-5p miRNA MIMAT0017031 Pcgf6 mRNA 309457 Prediction 0.1828 Pcgf6 RAID02331805 rno-miR-452-3p miRNA MIMAT0035749 Pcgf6 mRNA 309457 Prediction 0.1828 Pcgf6 RAID02404253 rno-miR-125b-5p miRNA MIMAT0000830 Pcgf6 mRNA 309457 Prediction 0.2202 Pcgf6 RAID02417292 rno-miR-212-3p miRNA MIMAT0000883 Pcgf6 mRNA 309457 Prediction 0.1828 Pcgf6 RAID02456914 rno-miR-19a-3p miRNA MIMAT0000789 Pcgf6 mRNA 309457 Prediction 0.1828 Pcgf6 RAID02723570 rno-let-7a-2-3p miRNA MIMAT0017086 Pcgf6 mRNA 309457 Prediction 0.1828 Pcgf6 RAID02816855 rno-miR-376c-3p miRNA MIMAT0003194 Pcgf6 mRNA 309457 Prediction 0.1828 Pcgf6 RAID02962590 rno-miR-6331 miRNA MIMAT0025070 Pcgf6 mRNA 309457 Prediction 0.1828 Pcgf6 RAID02984664 rno-miR-26a-5p miRNA MIMAT0000796 Pcgf6 mRNA 309457 Prediction 0.1828 Pcgf6 RAID03030843 rno-miR-182 miRNA MIMAT0005300 Pcgf6 mRNA 309457 Prediction 0.1828 Pcgf6 RAID03057331 rno-miR-382-5p miRNA MIMAT0003201 Pcgf6 mRNA 309457 Prediction 0.2202 Pcgf6 RAID03133969 rno-miR-381-3p miRNA MIMAT0003199 Pcgf6 mRNA 309457 Prediction 0.1828 Pcgf6 RAID03229040 rno-miR-26b-3p miRNA MIMAT0004714 Pcgf6 mRNA 309457 Prediction 0.1828 Pcgf6 RAID03296290 rno-miR-181a-5p miRNA MIMAT0000858 Pcgf6 mRNA 309457 Prediction 0.1828 Pcgf6 RAID03376099 rno-miR-543-5p miRNA MIMAT0004787 Pcgf6 mRNA 309457 Prediction 0.1828 Pcgf6 RAID03459908 rno-miR-199a-5p miRNA MIMAT0000872 Pcgf6 mRNA 309457 Prediction 0.1828 Pcgf6 RAID03565314 rno-miR-181d-5p miRNA MIMAT0005299 Pcgf6 mRNA 309457 Prediction 0.1828 Pcgf6 RAID03650799 rno-miR-326-3p miRNA MIMAT0000560 Pcgf6 mRNA 309457 Prediction 0.1828 Pcgf6 RAID03679519 rno-miR-194-5p miRNA MIMAT0000869 Pcgf6 mRNA 309457 Prediction 0.2202 Pcgf6 RAID03730137 rno-miR-351-5p miRNA MIMAT0000608 Pcgf6 mRNA 309457 Prediction 0.2202 Pcgf6 RAID03936835 rno-miR-330-5p miRNA MIMAT0004641 Pcgf6 mRNA 309457 Prediction 0.1828