DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000604 rno-miR-350 291987 Cirh1a cacuuucACAUACCCGAAACACUu ||| || :||| ||| guuucuuUGUUUGUUUUUUCUGAa 2 18 57 80 [rn4:19:36770232-36770255:+] 0.6400 125 0 -6.48 -0.1703 MIMAT0000607 rno-miR-7a* 291987 Cirh1a uaccgucuGACACUAAACAAca || || |||||| guucguuuCUUUG-UUUGUUuu 3 15 53 73 [rn4:19:36770228-36770248:+] 0.6400 128 0 -5.89 -0.1376 MIMAT0004718 rno-miR-29a* 291987 Cirh1a gacuugugguuuuCUUUAGUca ||||||| guuuguuuuuucuGAAAUCAug 3 10 65 86 [rn4:19:36770240-36770261:+] 0.6400 125 0 -8.03 -0.2219 MIMAT0004720 rno-miR-30e* 291987 Cirh1a cgacauuuguaggcuGACUUUc |||||| cuuuguuuguuuuuuCUGAAAu 2 8 61 82 [rn4:19:36770236-36770257:+] 0.6400 120 6 -7.46 -0.2767 MIMAT0004722 rno-miR-30d* 291987 Cirh1a cgucguuuguagacuGACUUUc |||||| cuuuguuuguuuuuuCUGAAAu 2 8 61 82 [rn4:19:36770236-36770257:+] 0.6400 120 6 -7.72 -0.2767 MIMAT0000809 rno-miR-30a* 291987 Cirh1a cgacguuuguaggcuGACUUUc |||||| cuuuguuuguuuuuuCUGAAAu 2 8 61 82 [rn4:19:36770236-36770257:+] 0.6400 120 6 -6.67 -0.2767 MIMAT0004731 rno-miR-125b* 291987 Cirh1a uccaggGUUCUCGGACUGA-ACa |::|| |||||| || ----aaCGGGACACUGACUGUGu 2 17 1 19 [rn4:19:36770176-36770194:+] 0.6774 120 0 -16.59 -0.8117 MIMAT0000831 rno-miR-126* 291987 Cirh1a gcgcAUGGUUUU--CAUUAUUAc | |::||| |:||||| uuuuUUCUGAAAUCAUGAUAAUa 2 18 70 92 [rn4:19:36770245-36770267:+] 0.6400 132 0 -3.48 -0.1134 MIMAT0005281 rno-miR-871 291987 Cirh1a acacuggccgugguuAGACUUau |||||| ucuuuguuuguuuuuUCUGAAau 3 9 60 82 [rn4:19:36770235-36770257:+] 0.6400 120 0 -7.58 -0.2295 MIMAT0012843 rno-miR-876 291987 Cirh1a accACUAAGUGUCUCUUUAGgu | :||: : |||||| uguUUGUUUUUUCUGAAAUCau 3 20 64 85 [rn4:19:36770239-36770260:+] 0.6400 123 0 -5.49 -0.2117 MIMAT0000863 rno-miR-186 291987 Cirh1a ucggGUUUUCCUCU--UAAGAAAc :|||| | : ||||||| auaaUAAAACAAAGUUAUUCUUU- 2 19 87 109 [rn4:19:36770262-36770284:+] 0.6400 145 7 -7.07 -1.1158 MIMAT0000863 rno-miR-186 291987 Cirh1a ucggguuuuccucuUAAGAAAc :|||||| gaacugucuguccuGUUCUUUg 2 9 28 49 [rn4:19:36770203-36770224:+] 0.6400 124 6 -11.08 -0.1377 MIMAT0000863 rno-miR-186 291987 Cirh1a ucggguuuuccucuuAAGAAAc |||||| ucuuuguuuguucguUUCUUUg 2 8 44 65 [rn4:19:36770219-36770240:+] 0.6400 120 6 -9.17 -0.1612 MIMAT0001628 rno-miR-433 291987 Cirh1a uguggcuccucgggUAGUACUa ||||||| uuguuuuuucugaaAUCAUGAu 2 9 67 88 [rn4:19:36770242-36770263:+] 0.6400 140 7 -11.08 -1.2844 MIMAT0005320 rno-miR-495 291987 Cirh1a uucuucACGUGGUACAAACAAa ||: |: |||||||| cuguccUGUUCUUUGUUUGUUc 2 17 35 56 [rn4:19:36770210-36770231:+] 0.6400 156 7 -9.48 -1.0762 MIMAT0005320 rno-miR-495 291987 Cirh1a uucuucacguGGUACAAACAAa |: |||||||| uuguucguuuCUUUGUUUGUUu 2 13 51 72 [rn4:19:36770226-36770247:+] 0.6400 148 7 -11.01 -1.2780 MIMAT0005341 rno-miR-488 291987 Cirh1a cugguucuuugucGGAAAGuu |||||| acacugacuguguCCUUUCuu 3 9 7 27 [rn4:19:36770182-36770202:+] 0.6400 120 0 -9.89 -0.1234

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G116300 Utp4 Rattus norvegicus 291987

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Utp4 RAID00363045 rno-miR-495 miRNA MIMAT0005320 Utp4 mRNA 291987 Prediction 0.2202 Utp4 RAID01481165 rno-miR-433-3p miRNA MIMAT0001628 Utp4 mRNA 291987 Prediction 0.1828 Utp4 RAID02535871 rno-miR-488-3p miRNA MIMAT0005341 Utp4 mRNA 291987 Prediction 0.1828 Utp4 RAID03870665 rno-miR-186-5p miRNA MIMAT0000863 Utp4 mRNA 291987 Prediction 0.1828