DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G092931 Dpf1 Rattus norvegicus 50545

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Dpf1 rno-let-7a 833 860 UUGAUAUGUUGGA------UGAUGGAGU ||| ||:|| :||:|||| -CCUACCCAGCCAGGCUGGGCUGCCUCC Dpf1 rno-let-7b 833 860 UUGGUGUGUUGGA------UGAUGGAGU |:|| ||:|| :||:|||| -CCUACCCAGCCAGGCUGGGCUGCCUCC Dpf1 rno-let-7c 839 860 -UUGGUAUGUUGGA-UGAUGGAGU |:||| ::|: :||:|||| CAGCCA---GGCUGGGCUGCCUCC Dpf1 rno-let-7d 833 860 UGAUACGUUGGA------UGAUGGAGA ||| ||:|| :||:|||| CCUACCCAGCCAGGCUGGGCUGCCUCC Dpf1 rno-let-7e 845 870 -UGAUAUGUUGGAGGAU--GGAGU- :||: :| :|||||| || || GGCUGGGCUGCCUCCUUCCCCCCAU Dpf1 rno-let-7i 838 860 UGUCGUGUUUGA--UGAUGGAGU |||| ||::|| :||:|||| CCAGC-CAGGCUGGGCUGCCUCC Dpf1 rno-miR-1* 254 278 -CCCA--UGUAUUUCUUCAUACACG ||| :||||:|| ||| ||| UGGGCGGGCAUAGAGGGGUA-GUGG Dpf1 rno-miR-107 398 421 ACUAUCGG-GACAUGUUAC-GACGA- | :||| ||| |:|| ||||| GGGGGGCCACUG---AGUGUCUGCUG Dpf1 rno-miR-10a 155 179 GUGUUUAAGCCUAGA-UGUCCCAU : :|: :||:|| :|||||| AGGGAGGGUGGGUCCAGCAGGGUC Dpf1 rno-miR-125a 968 995 GUGUCCA---AUUUCCCAGAGUCCCU- : :|| |::||||||| :|||| UGGGGGGAGGUGGAGGGUCUGGGGGAG Dpf1 rno-miR-125b 962 995 AGUGUUCAA-----------UCCCAGAGUCCCU- :||||| ||||||| :|||| -UGCAAGUGGGGGGAGGUGGAGGGUCUGGGGGAG Dpf1 rno-miR-129 709 741 -UCGUUCG--GGUCUGGCG------UUUUUC- :|||:|| |||| |||| :|:||| AGGCAGGCAGCCAGCCCGCUGCAAUGAGAAGA Dpf1 rno-miR-133a 389 408 UGUCGACCAACUUCCCCUGGUU :||||| :||||:||| -UGGCUGGGU--GGGGGGCCAC Dpf1 rno-miR-133b 388 408 -AUCGACCAACUUCCCCUGGUU |:||||| :||||:||| CUGGCUGGGU--GGGGGGCCAC Dpf1 rno-miR-134 249 295 GGGAGA---------------CCA---------GUUGGUCAGUGU ||||| ||| ||:||||| :|| GCCUCUGGGCGGGCAUAGAGGGGUAGUGGAUGCCAGCCAGUGGCAC Dpf1 rno-miR-140* 124 166 ACAGG----------CACCAA--GAUGGGACA-----CCAU |||: |||| :||||||| |||: GGUCUCCCUCUGCAAGUGGAAUGUUACCCUGAGGGAGGGUGG Dpf1 rno-miR-145 681 710 -UUCCCUAAGGA---CCC-UUUUGACCUG- ::|||| || ||| :|::| || | UGGGGGAGGCCGGUGGGGUGAGGCAGG-CA Dpf1 rno-miR-150 972 995 GUGACCAUGUUCCCA-ACCCUCU- : |||: :||||| ||||:|| GGGAGGUG-GAGGGUCUGGGGGAG Dpf1 rno-miR-151* 845 863 AUGAUCUGACACUCGAGGAGCU :||:|:||| |||||: GGCUGGGCUGC---CUCCUUC- Dpf1 rno-miR-152 1028 1063 GGGUUCAA-----------GACAGU-ACGUGACU- |||||| ||| | ||| ||| ACCAAGUCUCCUUUAUUGCCUGCCUCUGCUGUGAA Dpf1 rno-miR-15b 398 422 ACAUUUGGU-ACUACAC-GACGAU- | ::||| ||| ||| |||||: GGGGGGCCACUGA-GUGUCUGCUGG Dpf1 rno-miR-16 402 422 GCGGUUAUAAAUGCAC-GACGAU- |||| ||| |||||: GGCCACUGA----GUGUCUGCUGG Dpf1 rno-miR-183 271 295 -GUCACUUAAGA-UGGUCACGGUAU :||||:|| :|||||| || GUAGUGGAUGCCAGCCAGUGGCAC- Dpf1 rno-miR-184 148 190 -UGGGAA--UA-------------GUCAA---GAGG-CAGGU ||||| : ||| |||| |||| UACCCUGAGGGAGGGUGGGUCCAGCAGGGUCCCUCCUGUCCC Dpf1 rno-miR-185 848 870 -CUUGACGGA--AAGAGAGGU- |::|||||| ||| | ||| UGGGCUGCCUCCUUCCCCCCAU Dpf1 rno-miR-189 276 296 UGACUAUAGUCGAGUCAUCCGUG- |||: |||| |||| ||||| --GGAUGCCAGC-CAGU-GGCACG Dpf1 rno-miR-193 666 696 -GACCCUGAA-----ACA---UCCGGUCAA |||||:||| || |||||:|| CCUGGGGCUUGCAGCUGGGGGAGGCCGGUG Dpf1 rno-miR-195 840 857 -CGGUUAUAAAGACACGACGAU ||||: ||| ||||| AGCCAGG----CUGGGCUGCC- Dpf1 rno-miR-196b 837 859 -GGUUGUUGUCC--UUUGAUGGAU |||:| |||| :::||:||| CCCAGC--CAGGCUGGGCUGCCUC Dpf1 rno-miR-200a 273 292 UGUAGCAAUGGUCUGUCACAAU :| | |:|||| ||||| -AGUGGAUGCCAGCCAGUGG-- Dpf1 rno-miR-204 89 118 -UCCGUAUCCUACUG------UUUCCCUU ||| |||||:||| |:||||: AAGGGAUAGGGUGAAGCCCAGAGAGGGGC Dpf1 rno-miR-205 684 705 GUCUGAGGCCACCUUACUUCCU :|| ||||||| |||:| GGGAGGCCGGUGGGGUGAGGC- Dpf1 rno-miR-207 969 997 -UUCCCU---CCUCUCGGUCCUCUUCG- ::|||| ||||:|:| ||:|:||: GGGGGGAGGUGGAGGGUCUGGGGGAGUC Dpf1 rno-miR-20b* 530 559 -GUCU-------UCACGA--GUGUGACGUCA |||: :|||| |||||||| CCAGGUGGGCAUGGUGCCCACACACUGCC-- Dpf1 rno-miR-210 719 749 AGUC-GGCGACAGUGUG-------CGUGUC- ||| |||||| || |||||| CCAGCCCGCUG-CAAUGAGAAGAAGCACAGA Dpf1 rno-miR-214 913 935 GACGGACAGACACGGACGACA- || :||| ||||::||:||| GUGGUUGUGUGUGUUUGUUGUU Dpf1 rno-miR-22 661 683 UGUCAAGAAGUUGACCGUCGAA ||| || ::|| |||||| CCAGACCUGGGGCUUGCAGCUG Dpf1 rno-miR-224 399 418 AUUUGCCUUGGUGA-UCACUGAAC ||::||||| |||| || ----GGGGGCCACUGAGUGUCUG- Dpf1 rno-miR-28 40 62 -GAGUUAUCUGACACUCGAGGAA |||:: :|| |||||||| CCUCGGCCUCUUG-GAGCUCCUG Dpf1 rno-miR-296 385 410 -UGUCCUAACUC-CCCCCCGG-GA- :| |: ||:| |||||||| || AGCCUGGCUGGGUGGGGGGCCACUG Dpf1 rno-miR-298 110 138 CCUUCU------UGUCGGGAGGAGACGG ||:|: :|:|:|: ||||||| AGAGGGGCCAAGGCGGUCUCCCUCUGCA Dpf1 rno-miR-29a 20 40 -UUGGCUAAAGUCUACCACGAU- :||| ||::|:|||||||| GGACC---UUUGGGUGGUGCUAU Dpf1 rno-miR-29b 20 40 -UUGUGACUAAAGUUUACCACGAU- :|| || |: :|||||||| GGAC-CU----UUGGGUGGUGCUAU Dpf1 rno-miR-29c 21 40 -UGGCUAAAGUUUACCACGAU- ||| ||: :|||||||| GACC---UUUGGGUGGUGCUAU Dpf1 rno-miR-31 521 549 -GUCGAUACGG-----UCGUAGAACGGA |||| ||| :|||| |||| ACAGCCAGGCCAGGUGGGCAUGGUGCCC Dpf1 rno-miR-320 810 844 AAGCGGGAGAGU---------------UGGGUCGAAAA || ||:||||| ||||||| CUC-CCUUCUCAACCCUUUCCUUCCCUACCCAGCC--- Dpf1 rno-miR-324-3p 255 279 GGUCG-UCGUGGA-CCCCGUCACC- :|| :|||: ||||:||||| -GGGCGGGCAUAGAGGGGUAGUGGA Dpf1 rno-miR-324-5p 648 679 -UGUGGUUACGGGAU-------CCCCU-ACGC || ||::||||: |||| ||| CAC-CCGGUGCCUGCCAGACCUGGGGCUUGCA Dpf1 rno-miR-325 405 424 UGUGAAUGACUCGUGGAUGAUCC- ||||||:::||:||:|| -----CACUGAGUGUCUGCUGGGA Dpf1 rno-miR-326 156 177 UGACCUCCUUCCCGGGUC-UCC- ||||| |||:|||| ||| --GGGAGGGUGGGUCCAGCAGGG Dpf1 rno-miR-327 610 633 UGGGAGUACGGGGAG----UUCC :|:|| |||||||| :|| CUCUUCCUGCCCCUCCUUUGAGA Dpf1 rno-miR-328 85 121 UGCCUUCCC-------------GUCUCU-CCCGGUC :||||||| |||||| |||||| GUGGAAGGGAUAGGGUGAAGCCCAGAGAGGGGCCAA Dpf1 rno-miR-329 891 929 -UUUUUCCA--------------AUCGACCCACACAA- ||::|||| |:|:|| ||||||| CAAGGAGGUGUGGUCGUUUCUCGUGGUUGUGUGUGUUU Dpf1 rno-miR-331 679 701 AAGAUCCUAUCCGGGU-CCCCG- ||:|| ||||| : ||||: -GCUGGGGGAGGCCGGUGGGGUG Dpf1 rno-miR-333 497 516 UUUUCAUUGAUCGUGUGGUG :|:||:: || |||||| UGAGGUGGGUACCACACCU- Dpf1 rno-miR-335 772 794 UGUAAAAAGCAAUAACGAGAACU :|||||:||| |||:|:||| -UGUUUUUUGUUUUUGUUUUUGU Dpf1 rno-miR-338 395 424 AGUUGUUUUA-GUGACU-----ACGACCU- : :::: |||||| ||||||: -GGUGGGGGGCCACUGAGUGUCUGCUGGGA Dpf1 rno-miR-339 52 101 ACUCGAGG--------------ACC--------------UCCUGUCCCU ||||||| ||| :|||:|||| GGAGCUCCUGACUUUUCCCGCCUGGUGUCCCCAGUGGAAGGGAUAGGGU Dpf1 rno-miR-340 1054 1096 CCGAUAUUU--------------CAU----UGACUCUGCCU |||:|:|| ||| ||||:| |||| UGCUGUGAAUUAACUUGUUCUGUGUAUUAAACUGGGCCGGAC Dpf1 rno-miR-343 251 273 -AGACCCG--UGUGCCUCCCUCU ||||||| :||: |||||: CUCUGGGCGGGCAUAGAGGGGU- Dpf1 rno-miR-346 699 723 UCUCCGUCCGUGAGUCCGUCUGU- |||||||||| ||||||| || UGAGGCAGGCAGGCAGGCAGCCAG Dpf1 rno-miR-347 96 119 ACCCGC--UGGG--UCUCCCUGU |||:| :||| ||||||:| AGGGUGAAGCCCAGAGAGGGGCC Dpf1 rno-miR-349 156 179 -UCUCCAAUUCU-GUCGUCCCGAC :|||| |::| ||||||||: GGGAGGGUGGGUCCAGCAGGGUC- Dpf1 rno-miR-34a 713 732 -UUGUUGGUCGAUUCUGUGACGGU ::||:||||| |:|||| AGGCAGCCAGCC----CGCUGCA- Dpf1 rno-miR-34b 532 560 GUUAGUCG-AUUAA-----UGUGACGGAU ::| :|| |::| |||||||| AGGUGGGCAUGGUGCCCACACACUGCCC- Dpf1 rno-miR-34c 838 859 CGUUAGUCGA-UUGAUGUGACGGA- |||| ::||: :|||||| ----CCAGCCAGGCUGGGCUGCCUC Dpf1 rno-miR-351 974 995 GUCCGAGUUUCCCGAGGAGUCCCU- |||: ::||||: || :|||| GAGGU--GGAGGGU--CUGGGGGAG Dpf1 rno-miR-376c 1057 1080 GCACUUUA---AAGGAGAUACAA ||||| || :|||:||| UGUGAAUUAACUUGUUCUGUGUA Dpf1 rno-miR-412 675 701 -UGCCGAUCA-C-CUGGUCCACUUCA- :| |||:| | |:|| |||| || UGCAGCUGGGGGAGGCC-GGUGGGGUG Dpf1 rno-miR-424 15 39 -AGGUUUUGU--ACUUAACGACGAC ||||::|| || | | |||| CUCCAGGACCUUUGGGU-GGUGCUA Dpf1 rno-miR-431 115 144 ACGUA-CUGCCG------GACGUUCUGU- || |:|||: ||||||| : GGCCAAGGCGGUCUCCCUCUGCAAGUGGA Dpf1 rno-miR-449 528 560 -UGGUCGA-UUGUUA--------UGUGACGGU :|||| ::|| |||||||| GGCCAGGUGGGCAUGGUGCCCACACACUGCCC Dpf1 rno-miR-483 962 984 -UGUUCUGCCCUCCCCUCCUCACU :|||| |||:| || |||| UGCAAGUGGGGGGAGGUGGAGG-- Dpf1 rno-miR-485 1084 1103 CUUAAGUAGUGCCGGUC---GGAGA- | ||||:| ||||| -------ACUGGGCCGGACCCCUCUG Dpf1 rno-miR-497 398 422 AUGUUUGGUG--UCACACGACGAC- : :::|||| ||||| |||||| GGGGGGCCACUGAGUGU-CUGCUGG Dpf1 rno-miR-503 707 732 -GUCA---UGACAA--GGGCGACGAU ||| :| | |||||||| GCAGGCAGGCAGCCAGCCCGCUGCA- Dpf1 rno-miR-540 16 50 -GGUCCU---AGCU----------GGAGACUGGA- |||||| |:|: |||| |:||| UCCAGGACCUUUGGGUGGUGCUAUCCUC-GGCCUC Dpf1 rno-miR-541 161 183 ACACU--GGUUGUAGUCUUAGGGAA |||: |||:| || ||||| GGUGGGUCCAGC---AGGGUCCCUC Dpf1 rno-miR-7* 912 934 AUACCGUCUGACACUAAACAAC- :|||: | |||| ||||||| CGUGGUUGUGUGUG-UUUGUUGU Dpf1 rno-miR-92 686 716 GUCCGGCC--------CUGUUCA--CGUUAU ||||||| |:||:| |||: GAGGCCGGUGGGGUGAGGCAGGCAGGCAGG- Dpf1 rno-miR-96 527 549 -UCGUUUUUACACG-AUCACGGUUU :|| |::|| || |:||||| AGGCC-AGGUGGGCAUGGUGCCC-- Dpf1 rno-miR-98 838 860 UUGUUAUGUUGAA-UGAUGGAGU ||: ::|| :||:|||| -CCAGCCAGGCUGGGCUGCCUCC Dpf1 rno-let-7a 832 859 uuGAUAUGUUG----GA--UGAUGGAGu ||| ||:| || :||:|||| ccCTACCCAGCCAGGCTGGGCTGCCTCc Dpf1 rno-let-7b 836 859 UUGGUGUGUUGGA--UGAUGGAGu | ||| ||: || :||:|||| ACCCAGCCAGGCTGGGCTGCCTCc Dpf1 rno-let-7c 836 859 UUGGUAUGUUGGA--UGAUGGAGu | ||| ||: || :||:|||| ACCCAGCCAGGCTGGGCTGCCTCc Dpf1 rno-let-7e 833 859 uGAUAUGUUGG--AG----GAUGGAGu ||| ||:|| | ||:|||| cCTACCCAGCCAGGCTGGGCTGCCTCc Dpf1 rno-miR-1* 259 277 CCCAUGUAUUUCUUCAUACACg ||| ||||:||::||| ||| GGG--CATAGAGGGGTA-GTGg Dpf1 rno-miR-10a 156 178 gugUUUAAGCCUAGAUGUCCCAu |:: | || | :|||||| gggAGGGTGGGTCCAGCAGGGTc Dpf1 rno-miR-125a 972 993 gugUCCAAUUUCCCAGAGUCCCU ||| |::||||||| :|||| gggAGG-TGGAGGGTCTGGGGGA Dpf1 rno-miR-125b 971 993 agugUUCA-AUCCCAGAGUCCCU |:|| ||||||| :|||| ggggAGGTGGAGGGTCTGGGGGA Dpf1 rno-miR-129 717 736 UCGUUCGGGUCUGGCGUUUUUC ||| ||||| :|:|||| :|| AGCCAGCCC--GCTGCAATGAG Dpf1 rno-miR-133a 388 407 uguCGACCAACUUCCCCUGGUu ||||| || ||||:||| ctgGCTGGGTG--GGGGGCCAc Dpf1 rno-miR-133b 389 407 AUCGACCAACUUCCCCUGGUu |:||||| || ||||:||| TGGCTGGGTG--GGGGGCCAc Dpf1 rno-miR-134 273 295 gggagacCAGUUGGUCA--GUGu | ||:||||| ||| agtggatGCCAGCCAGTGGCACg Dpf1 rno-miR-140* 134 159 ACAGGCACC--AAGAUGGGACACCau || |||| | :||||||| || TGCAAGTGGAATGTTACCCTGAGGga Dpf1 rno-miR-145 658 685 uucccuaaGGACCC----UUUUGACCug |||||| : |:|||| ctgccagaCCTGGGGCTTGCAGCTGGgg Dpf1 rno-miR-151* 840 863 auGAUCUGACAC--UCGAGGAgcu | ||:||| | : ||||| agCCAGGCTGGGCTGCCTCCTtcc Dpf1 rno-miR-183 272 295 gUCACUUAAGAU-GGUCACGGUau ||||:|| | | |||||| || tAGTGGATGCCAGCCAGTGGCAcg Dpf1 rno-miR-184 166 189 ugGGAAUAGU--CA-AGAGG-CAGGu || | || || |||| |||| gtCC--AGCAGGGTCCCTCCTGTCCc Dpf1 rno-miR-185 849 868 CUUGACGGA--AAGAGAGGU |::|||||| ||| | ||| GGGCTGCCTCCTTCCCCCCA Dpf1 rno-miR-189 274 294 ugaCUAUAGUCGAGUCAUCCGUG |||: |||| |||| ||||| gtgGATGCCAGC-CAGT-GGCAC Dpf1 rno-miR-193 667 695 GACCCUGAA-----A---CAUCCGGUCAa |||||:||| | | |||||:|| CTGGGGCTTGCAGCTGGGGGAGGCCGGTg Dpf1 rno-miR-195 841 857 CGGUUAUAAAGACACGACGau ||||: ||| ||||| GCCAG----GCTGGGCTGCct Dpf1 rno-miR-196b 838 858 GGUUGUUGUCC--UUUGAUGGAu |||:| |||| :::||:||| CCAGC--CAGGCTGGGCTGCCTc Dpf1 rno-miR-200a 272 293 uguAGCAAUGGUCUGUCACaau | | |:|||| ||||| tagTGGATGCCAGCCAGTGgca Dpf1 rno-miR-204 90 117 UCCGUAUCCUACU----G--UUUCCCuu ||| |||||:||| | |:|||| AGGGATAGGGTGAAGCCCAGAGAGGGgc Dpf1 rno-miR-205 684 705 guCUGAGGCCACCUUACUUCcu || |||||||::|||:| ggGAGGCCGGTGGGGTGAGGca Dpf1 rno-miR-207 970 995 uuCCCU---CCUCUCGGUCCUCUUCg |||| ||||:|:| ||:|:|| ggGGGAGGTGGAGGGTCTGGGGGAGt Dpf1 rno-miR-20b* 538 560 gucuuCAC--GAGUGUGACGuca ||| | |||||||| gcatgGTGCCCACACACTGCccc Dpf1 rno-miR-224 395 418 auuugCCUUGGUGA-UCACUGAac ||::||||| |||| || ggtggGGGGCCACTGAGTGTCTgc Dpf1 rno-miR-28 41 61 GAGUUAUCUGACA--CUCGAGGAa ||| :| || | |||||||| CTC---GGCCTCTTGGAGCTCCTg Dpf1 rno-miR-296 387 407 uGUCCUAACUCCCCCCCGGga | || | |: |||||||| cCTGGCTGGGTGGGGGGCCac Dpf1 rno-miR-298 115 137 CC--UUCUUGUCGGGAGGAGACGg || ||| :|:|:|: ||||||| GGCCAAG-GCGGTCTCCCTCTGCa Dpf1 rno-miR-298 1084 1104 ccuuCUUGUCGGGAGGAGACGG |: |:| || |||||||| actgGGCCGGACC-CCTCTGCC Dpf1 rno-miR-298 1036 1057 ccuucuUGUCGGGAGGAGACGg |: |||: ||||||| tcctttATTGCCTGCCTCTGCt Dpf1 rno-miR-29a 21 38 uUGGCUAAAGUCUACCACGAU ||| ||::|:|||||||| gACC---TTTGGGTGGTGCTA Dpf1 rno-miR-29b 16 38 uugugacuaAAGUUUACCACGAU ||::::|||||||| tccaggaccTTTGGGTGGTGCTA Dpf1 rno-miR-29c 22 38 UGGCUAAAGUUUACCACGAU ||| ||::::|||||||| ACC---TTTGGGTGGTGCTA Dpf1 rno-miR-31 522 548 GUCGAUACGGU-----CGUAGAACGGa |||| | |||| |||| |||| CAGCCAGGCCAGGTGGGCATGGTGCCc Dpf1 rno-miR-320 824 846 aAGCGGGAGAGUUGGGUCGaaaa |: ||:|| | ||||||| cTTTCCTTCCCTACCCAGCcagg Dpf1 rno-miR-324-3p 254 277 gguCG-UCGUG-GACCCCGUCACC || :|||: ||||:||||| tggGCGGGCATAGAGGGGTAGTGG Dpf1 rno-miR-324-5p 668 691 ugugguuACG-GGAUCCCCUACGc ||| ||:||||| || tggggctTGCAGCTGGGGGAGGCc Dpf1 rno-miR-325 400 422 ugugaaUGACUCGUGGAUGAUCC ||||||:::||:||:|| ggggccACTGAGTGTCTGCTGGG Dpf1 rno-miR-326 84 112 UGACCU--CCU-UCC-----CGGGUCUCc | |||| ||| ||| |||||||| AGTGGAAGGGATAGGGTGAAGCCCAGAGa Dpf1 rno-miR-326 132 157 uGAC---CUCCUUCC--CGGGUCUCC ||| | |||| | ||| |||| tCTGCAAGTGGAATGTTACCCTGAGG Dpf1 rno-miR-326 154 179 ugaCCUCCUUCCCGGGUC-UCC---- |||||: |||:|||| ||| gagGGAGGGTGGGTCCAGCAGGGTCC Dpf1 rno-miR-327 609 628 UG-GGAGUACGGGGAGuucc || |:|| |||||||| ACTCTTCCTGCCCCTCcttt Dpf1 rno-miR-328 98 120 ugcCUUCCCGUCUC-UCCCGGUc |||| ||||| :|||||| ggtGAAGCCCAGAGAGGGGCCAa Dpf1 rno-miR-329 880 904 uuuuuCCAAUCG--AC-CCACACaa || |:|| | |||||| tttggGGGTGGCAAGGAGGTGTGgt Dpf1 rno-miR-329 906 927 uuuuuccaAUCGACCCACACAA |:|:|| ||||||| gtttctcgTGGTTGTGTGTGTT Dpf1 rno-miR-331 678 698 aaGAUCCUAUCCGGGUC-CCCg ||:||: ||| ||:| ||| agCTGGGGGAGG-CCGGTGGGg Dpf1 rno-miR-333 497 516 uuUUCAUUGAUCGUGUGGug |:||:: || |||||| tgAGGTGGGTACCACACCtt Dpf1 rno-miR-335 771 793 uguAAAAAGCAAUAACGAGAACu |||||:||| |||:|:||| ttgTTTTTTGTTTTTGTTTTTGt Dpf1 rno-miR-338 400 422 aguuguuuuagugacuACGACCu |||||| ggggccactgagtgtcTGCTGGg Dpf1 rno-miR-339 75 100 aCUC-GAGG--ACCU--CCUGUCCCu | | | || |||| |||:|||| gGTGTCCCCAGTGGAAGGGATAGGGt Dpf1 rno-miR-340 1071 1094 ccGAUAUUUCA-UUGACUCUGCCU ||:|: | | |||||:| |||| ttCTGTGTATTAAACTGGGCCGGA Dpf1 rno-miR-343 142 161 agacCCGUGUGCCUCCCUCu | :|| | ||||||| gaatGTTACCCTGAGGGAGg Dpf1 rno-miR-343 252 273 AGACCCG--UGUGCCUCCCucu ||||||| :||: ||||| TCTGGGCGGGCATAGAGGGgta Dpf1 rno-miR-349 157 179 uCUCCAAUUC-UGUCGUCCCgac |||| |::| |||||||| gGAGGGTGGGTCCAGCAGGGtcc Dpf1 rno-miR-34a 537 559 uuguugguCGAUUCUGUGACGGu || | |||||||| ggcatggtGCCCACACACTGCCc Dpf1 rno-miR-34a 710 732 uuGUUGGUCGAUUCUGUGACGgu ||: |||| |: |:|||| ggCAGGCAGCCAGCCCGCTGCaa Dpf1 rno-miR-34b 538 560 guuagucgauuaaUGUGACGGau |||||||| gcatggtgcccacACACTGCCcc Dpf1 rno-miR-34c 538 559 CGUUAGUCGAUUGAUGUGACGGa ||| || || |||||||| GCATGGTGCCCAC-ACACTGCCc Dpf1 rno-miR-34c 834 857 cguuaGUCGAU-UGAUGUGACGGA |||| | :||: :|||||| ctaccCAGCCAGGCTGGGCTGCCT Dpf1 rno-miR-370 155 176 uuggUCCAAGGUGGGGUCGUCCg ||| | : :|||||||| agggAGGGT-GGGTCCAGCAGGg Dpf1 rno-miR-412 85 105 ugCCGAUCACCUGGUCCACUUCa || || |||: :||||||| gtGG-AAG-GGATAGGGTGAAGc Dpf1 rno-miR-412 676 704 uGCCGAUCACCU--GG----UCCACUUCa | |||:| ||| || :|||||:| gCAGCTGGGGGAGGCCGGTGGGGTGAGGc Dpf1 rno-miR-424 16 38 AGGUUUUG--UACUUAACGACGAc ||||::|| ||:: || |||| TCCAGGACCTTTGGG-TGGTGCTa Dpf1 rno-miR-431 116 142 acGUACUGCC------GGACGUUCugu || |:||| :||||||| gcCAAGGCGGTCTCCCTCTGCAAGtgg Dpf1 rno-miR-449 537 559 ugGU-CGAUUGUUAUGUGACGGu || | |: | | |||||||| ggCATGGTGCCCACACACTGCCc Dpf1 rno-miR-483 972 997 uguUCUGCCCUCC---CCUCCUCAcu ||::|| :|| ||:||||| gggAGGTGGAGGGTCTGGGGGAGTct Dpf1 rno-miR-485 1077 1101 CUUAAGUAGUGCCGGUC---GGAGA | ||| | | ||||:| ||||| GTATTAAACTGGGCCGGACCCCTCT Dpf1 rno-miR-503 716 732 GUCAUGACAAGGGCGACGau ||| | | |||||||| CAG-CCAG--CCCGCTGCaa Dpf1 rno-miR-540 2 25 GGUCCUAGCUGGAGA----CUGGA || || || :|:||| ||||| CCTGGCTCTGCTTCTCCAGGACCT Dpf1 rno-miR-541 163 182 ACACUGGUUGUAGUCUUAGGGAa || | |||: |||::||||| TGGGTCCAG---CAGGGTCCCTc Dpf1 rno-miR-92 708 734 GUCCGGCC--CUGUU---C-ACGUUAu ||||| || | ||: | |||||| CAGGCAGGCAGCCAGCCCGCTGCAATg Dpf1 rno-miR-96 523 550 UCGUU----UUUACACG-AUCACGGUUu ||| | |::|| || |:||||| | AGCCAGGCCAGGTGGGCATGGTGCCCAc Dpf1 rno-miR-98 836 859 UUGUUAUGU-UGA-AUGAUGGAGu | | | || :|| :||:|||| ACCCAGCCAGGCTGGGCTGCCTCc Dpf1 rno-miR-28 54 61 ----------------------GAGUUAUCUGACACUCGAGGAA |||:: :|| |||||||| AGGACCUUUGGGUGGUGCUAUCCUCGGCCUCUUG-GAGCUCCUG Dpf1 rno-miR-298 130 137 C---------------CUUCU------UGUCGGGAGGAGACGG ||:|: :|:|:| ||||||| UAGGGUGAAGCCCAGAGAGGGGCCAAGGCGGUCUCCCUCUGCA Dpf1 rno-miR-298 1050 1057 CCUUCUUGU---------------------CGGGAGGAGACGG |||: |||||||: UACCCCCCUUGCCACCAAGUCUCCUUUAUUGCCUGCCUCUGCUG Dpf1 rno-miR-298 1097 1104 CCU----------------------UCUUGUCGGGAGGAGACGG :| |:| || |||||||| AUUAACUUGUUCUGUGUAUUAAACUGGGCCGGACC-CCUCUGCCC Dpf1 rno-miR-326 105 112 U--GACCU---------CCUUCC-----------CGGGUCUCC |||| |||||| |||||||| CGCCUGGUGUCCCCAGUGGAAGGGAUAGGGUGAAGCCCAGAGA Dpf1 rno-miR-343 154 161 -------------AGAC-----CCGU---GUGC--CUCCCUCU |||| || :|| |||||||: AAGGCGGUCUCCCUCUGCAAGUGGAAUGUUACCCUGAGGGAGGG Dpf1 rno-miR-34a 552 559 U---UGUUGGUC-GAUUC----------------UGUGACGGU |||:|||| | |:| |||||||| CCUCACAGCCAGGCCAGGUGGGCAUGGUGCCCACACACUGCCC Dpf1 rno-miR-34c 552 559 ---------------------CGUUAGUCGAUUGAUGUGACGGA ||| || || |||||||| CCUCACAGCCAGGCCAGGUGGGCAUGGUGCCCAC-ACACUGCCC Dpf1 rno-miR-370 169 176 U--------------UGG---UCCAA---GGUGGGGUCGUCCG ||| ||| : : :|||||||| UGCAAGUGGAAUGUUACCCUGAGGGAGGGUGGGUCCAGCAGGG Dpf1 rno-miR-412 98 105 U------GCCGAUCACCUGG--------------UCCACUUCA || ||:||| || :||||||| CUUUUCCCGCCUGGUGUCCCCAGUGGAAGGGAUAGGGUGAAGC Dpf1 rno-miR-449 552 559 ------------UGGUCGAUU-GUUA--------UGUGACGGU :|||| |:: || |||||||| CCUCACAGCCAGGCCAGGUGGGCAUGGUGCCCACACACUGCCC

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Dpf1 RAID00376045 rno-miR-204-5p miRNA MIMAT0000877 Dpf1 mRNA 50545 Prediction 0.1828 Dpf1 RAID00548000 rno-miR-509-5p miRNA MIMAT0024849 Dpf1 mRNA 50545 Prediction 0.1828 Dpf1 RAID00609334 rno-miR-298-5p miRNA MIMAT0000900 Dpf1 mRNA 50545 Prediction 0.1828 Dpf1 RAID00857128 rno-miR-29a-3p miRNA MIMAT0000802 Dpf1 mRNA 50545 Prediction 0.1828 Dpf1 RAID01072812 rno-miR-135b-5p miRNA MIMAT0000611 Dpf1 mRNA 50545 Prediction 0.1828 Dpf1 RAID01238987 rno-miR-3541 miRNA MIMAT0017795 Dpf1 mRNA 50545 Prediction 0.1828 Dpf1 RAID01387312 rno-miR-135a-5p miRNA MIMAT0000841 Dpf1 mRNA 50545 Prediction 0.1828 Dpf1 RAID01715511 rno-miR-495 miRNA MIMAT0005320 Dpf1 mRNA 50545 Prediction 0.1828 Dpf1 RAID01800319 rno-miR-1956-3p miRNA MIMAT0035736 Dpf1 mRNA 50545 Prediction 0.1828 Dpf1 RAID01990254 rno-miR-1306-5p miRNA MIMAT0024851 Dpf1 mRNA 50545 Prediction 0.1828 Dpf1 RAID02149513 rno-miR-211-5p miRNA MIMAT0000882 Dpf1 mRNA 50545 Prediction 0.1828 Dpf1 RAID02162993 rno-miR-452-3p miRNA MIMAT0035749 Dpf1 mRNA 50545 Prediction 0.1828 Dpf1 RAID02203549 rno-miR-3085 miRNA MIMAT0017805 Dpf1 mRNA 50545 Prediction 0.1828 Dpf1 RAID02601544 rno-miR-673-5p miRNA MIMAT0005328 Dpf1 mRNA 50545 Prediction 0.1828 Dpf1 RAID03104590 rno-miR-29b-3p miRNA MIMAT0000801 Dpf1 mRNA 50545 Prediction 0.1828 Dpf1 RAID03153283 rno-miR-3544 miRNA MIMAT0017798 Dpf1 mRNA 50545 Prediction 0.1828 Dpf1 RAID03292105 rno-miR-29c-3p miRNA MIMAT0000803 Dpf1 mRNA 50545 Prediction 0.1828 Dpf1 RAID03405121 rno-miR-92a-2-5p miRNA MIMAT0017108 Dpf1 mRNA 50545 Prediction 0.1828 Dpf1 RAID03482181 rno-miR-7a-2-3p miRNA MIMAT0017091 Dpf1 mRNA 50545 Prediction 0.1828 Dpf1 RAID03578587 rno-miR-326-5p miRNA MIMAT0017028 Dpf1 mRNA 50545 Prediction 0.1828 Dpf1 RAID03670474 rno-miR-770-5p miRNA MIMAT0005338 Dpf1 mRNA 50545 Prediction 0.1828 Dpf1 RAID03681574 rno-miR-383-3p miRNA MIMAT0017197 Dpf1 mRNA 50545 Prediction 0.1828 Dpf1 RAID03844615 rno-miR-877 miRNA MIMAT0005285 Dpf1 mRNA 50545 Prediction 0.1828 Dpf1 RAID03862811 rno-miR-1912-3p miRNA MIMAT0017865 Dpf1 mRNA 50545 Prediction 0.1828 Dpf1 RAID03931317 rno-miR-328a-5p miRNA MIMAT0017029 Dpf1 mRNA 50545 Prediction 0.1828