DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G101105 Shkbp1 Rattus norvegicus 292735

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Shkbp1; Sb1 rno-miR-100 40 63 GUGUUCA---AGCCUAGAUGCCCAA ||:| ||||: ||| ||| -CCAGGGGACUCGGGACUAGGGGG- Shkbp1; Sb1 rno-miR-124a 5 27 ACCGUAAGUGGC--GCACGGAAUU || |||| :||||||| -AGCCACGACCGGCUGUGCCUUC- Shkbp1; Sb1 rno-miR-125a 32 55 GUGUCCAAU-UUCCCAGAGUCCCU || ||| |:||| |||:|| GACUGGUCCCAGGGGACUCGGGA- Shkbp1; Sb1 rno-miR-125b 32 55 AGUGUUCAA---UCCCAGAGUCCCU || :|| :||| |||:|| -GACUGGUCCCAGGGGACUCGGGA- Shkbp1; Sb1 rno-miR-132 9 38 -GCUGGUACCGACA----------UCUGACAAU ||||| |||||| :||||| ACGACC--GGCUGUGCCUUCUUGUGGACUGG-- Shkbp1; Sb1 rno-miR-133a 30 51 UGUC-GACCAACUUCCCCUGGUU :| ||||| |||||||: -UGGACUGGUCCCAGGGGACUC- Shkbp1; Sb1 rno-miR-133b 29 51 -AUC-GACCAACUUCCCCUGGUU |:| ||||| |||||||: GUGGACUGGUCCCAGGGGACUC- Shkbp1; Sb1 rno-miR-140* 10 34 ACAGGCACCAAGAUGGG---ACACCAU | ||| | |:||: ||||| CGACCGGC--UGUGCCUUCUUGUGGA- Shkbp1; Sb1 rno-miR-150 32 72 GUGACCA---------------UG-UUCCCAA-CCCUCU- |||||| || |:||| |||||: GACUGGUCCCAGGGGACUCGGGACUAGGGGGAGGGGAGGC Shkbp1; Sb1 rno-miR-151 38 60 -GGAGUUCCUCGGAGUCA-GAUCA || ||:|| | |||:| |||| UCC-CAGGG-GACUCGGGACUAGG Shkbp1; Sb1 rno-miR-151* 26 54 -AUGAUCUGACA------CUCGAGGAGCU- | |:||||| |:| ||||: CUUGUGGACUGGUCCCAGGGGA--CUCGGG Shkbp1; Sb1 rno-miR-193 65 89 GACC-CUGAA--AC-AUC-CGGUCAA || |:||| || |:| ||||| -GGGAGGCUUCCUGUUGGAGCCAGG- Shkbp1; Sb1 rno-miR-204 43 71 -UCCGUA-UCCUA---CUGUUUCCCUU- :|| :||| |: :|:||||: GGGGACUCGGGACUAGGGGGAGGGGAGG Shkbp1; Sb1 rno-miR-207 62 91 -UUCCCUCC---------UCUCGGUCCUCUUCG |:|||||| :||||||||| GAGGGGAGGCUUCCUGUUGGAGCCAGGAA---- Shkbp1; Sb1 rno-miR-211 41 71 -UCCGUU---UCCUA---CUGUUUCCCUU- ||| :| :||| |: :|:||||: CAGGGGACUCGGGACUAGGGGGAGGGGAGG Shkbp1; Sb1 rno-miR-212 14 38 -CCGGCACU----GACCUCUGACAAU |||:||| :|| :||||| CGGCUGUGCCUUCUUGUGGACUGG-- Shkbp1; Sb1 rno-miR-224 78 110 AUUUGCCUUGGU--------GAUCACU---GAAC- :|||:||| :||||| |||| ---UUGGAGCCAGGAACUCUUUAGUGUGAUCUUGG Shkbp1; Sb1 rno-miR-23a 65 106 -CCUUU--AGGG--ACC--------------GUUACACUA |||:: |||: ||| :|:|||||| GGGAGGCUUCCUGUUGGAGCCAGGAACUCUUUAGUGUGAUC Shkbp1; Sb1 rno-miR-23b 68 106 -CCAUUAGGG--ACC--------------GUUACACUA- || |||: ||| :|:|||||| AGGCU-UCCUGUUGGAGCCAGGAACUCUUUAGUGUGAUC Shkbp1; Sb1 rno-miR-24 71 88 GACAAGGACGACUUGACUCGGU- ||||||:|| |||||| --CUUCCUGUUG----GAGCCAG Shkbp1; Sb1 rno-miR-292-3p 46 75 UGUGAGUUUUGGACCGCCG------UGAA- ||||:::||: || || :||| -GACUCGGGACUAGGGGGAGGGGAGGCUUC Shkbp1; Sb1 rno-miR-292-5p 62 85 GUUUUCU-CGGGGGUCAAACUCA |:::|| ||::|| ||| ||| GAGGGGAGGCUUCCUGUUGGAGC Shkbp1; Sb1 rno-miR-296 49 78 UGUCCUAA-----CUCCCCCCCG--GGA- |:||| |||||| ||| ||| UCGGGACUAGGGGGAGGGGAGGCUUCCUG Shkbp1; Sb1 rno-miR-31 13 32 -GUCGAUACGGUCGUAGAACGGA |:|||:|||| |||||: CCGGCUGUGCCU---UCUUGUG- Shkbp1; Sb1 rno-miR-324-3p 39 68 -GGUC------GUCGUGGACCCCGUCACC- |||| |:| ||: |||| || || CCCAGGGGACUCGGGACUAGGGGGAG-GGG Shkbp1; Sb1 rno-miR-324-5p 32 53 UGUGGUUACGGGAUCCCCUACGC- ||: | ||| |||||| || -GACUGGU-CCC-AGGGGACUCGG Shkbp1; Sb1 rno-miR-326 32 63 -UGACC-----UCCUU---CCCGGGUCUCC- ||||| :||:| ||| |:||:|| GACUGGUCCCAGGGGACUCGGGACUAGGGGG Shkbp1; Sb1 rno-miR-328 49 89 UGCCU---UCCCG--UCUCUCC------------CGGUC- |||: |||| :|:|||| ||||| UCGGGACUAGGGGGAGGGGAGGCUUCCUGUUGGAGCCAGG Shkbp1; Sb1 rno-miR-331 23 48 -AAGAU--CCUAUCC-GGGUCCCCG |||| ||| || |||||||| CUUCUUGUGGACUGGUCCCAGGGGA Shkbp1; Sb1 rno-miR-336 51 69 -UCUGAUCUAUACCUUCCCACU :||||||: |||:||| GGGACUAGGG--GGAGGGGA-- Shkbp1; Sb1 rno-miR-337 65 92 -UUUCCGUAGUAUAUCCUCGA--CUU- ::|||| || |:| ||||| ||| GGGAGGCUUCCUGUUGGAGCCAGGAAC Shkbp1; Sb1 rno-miR-339 43 70 ACUC-GAG----GA-CCUCCUGUCCCU- |:| ||| || ||:||| :|||| GGGGACUCGGGACUAGGGGGA-GGGGAG Shkbp1; Sb1 rno-miR-343 42 65 AGACCCGUGUGCC----UCCCUCU- ||| || ||| ||||:|| --AGGGGACUCGGGACUAGGGGGAG Shkbp1; Sb1 rno-miR-347 42 67 ACCCGCUGGG------UCUCCCUGU- ||| |||:| ||:|||| : AGGG-GACUCGGGACUAGGGGGAGGG Shkbp1; Sb1 rno-miR-351 35 55 GUCCGAGUUUCCCGAGGAGUCCCU ||: | |:||| |||:|| -UGGUCCCAGGGGA--CUCGGGA- Shkbp1; Sb1 rno-miR-378 46 71 -UGUGUCCUGGA-CCUCAGUCCUC- || |:||||: ||:| :|||| GACUCGGGACUAGGGGGAGGGGAGG Shkbp1; Sb1 rno-miR-412 29 67 UGCC-GAUCA-------------CCUGGUCCA-CUUCA :|| ||:|| ||||:||| ||:| GUGGACUGGUCCCAGGGGACUCGGGACUAGGGGGAGGG Shkbp1; Sb1 rno-miR-422b 20 54 -CGGAAGA----CUGA----GGUUCA---GGUCA ||||||| |||| |||:| :|:| UGCCUUCUUGUGGACUGGUCCCAGGGGACUCGGG Shkbp1; Sb1 rno-miR-449 148 181 -UGGUC-----GAUUGUUAU----GUGACGGU- :||| ||||:|| |||||||| AGCCACUGUCUCUAAUAAAAUCCUCACUGCCAA Shkbp1; Sb1 rno-miR-483 49 72 UGUUCUG----CCCUCCCCUCCUCACU |::||| ||||||||||| UCGGGACUAGGGGGAGGGGAGGC---- Shkbp1; Sb1 rno-miR-485 100 130 CUUAAGUAGUGCCGGU----------CGGAGA- | ||| ||:|: |||||| ---GUGAUCUUGGUCGCCAAGUUCCCGCCUCUC Shkbp1; Sb1 rno-miR-96 81 119 -UC-GUUUU--------UACACG---AUCA-CGGUUU- || ||::| :|||| |:|| |||||: GAGCCAGGAACUCUUUAGUGUGAUCUUGGUCGCCAAGU Shkbp1; Sb1 rno-miR-99a 40 63 -GUGUUCU-AGCCUAGAUGCCCAA || ::|| ||||: ||| ||| CCAGGGGACUCGGGACUAGGGGG- Shkbp1; Sb1 rno-miR-99b 40 63 GCGUUCC---AGCCAAGAUGCCCAC ||:|| |||| ||| ||| -CCAGGGGACUCGGGACUAGGGGG- Shkbp1; Sb1 rno-miR-100 39 63 GUGUUC---AAGCCUAGAUGCCCaa | ||:| ||||: ||| ||| CCCAGGGGACTCGGGACTAGGGGga Shkbp1; Sb1 rno-miR-124a 4 27 ACCGUAAGUGGC--GCACGGAAuu | || |||| :||||||| TAGCCACGACCGGCTGTGCCTTct Shkbp1; Sb1 rno-miR-125a 24 46 gugucCAAUUUCCCAGAGUCCCu || :| |||| ||||| ttcttGTGGACTGGTCCCAGGGg Shkbp1; Sb1 rno-miR-125b 25 46 aguguucaaucCCAGAGUCCCu |||| ||||| tcttgtggactGGTCCCAGGGg Shkbp1; Sb1 rno-miR-132 14 39 GCUGGUACCG----ACAUCUGACAAu ||:|::|| | |||:||||| | CGGCTGTGCCTTCTTGTGGACTGGTc Shkbp1; Sb1 rno-miR-133a 30 51 ugucGACCAACUUCCCCUGguu ||||| ||||||| tggaCTGGTCCCAGGGGACtcg Shkbp1; Sb1 rno-miR-133b 30 51 AUC-GACCAACUUCCCCUGguu |:| ||||| ||||||| TGGACTGGTCCCAGGGGACtcg Shkbp1; Sb1 rno-miR-140* 10 34 aCAGGCAC--CAAGAUGGGACACCau | ||| | || | :|:||||| cGACCG-GCTGTGCCTTCTTGTGGac Shkbp1; Sb1 rno-miR-151 37 59 ggaGUUCCUCGGAG-UCAGAUCa | |||:| ||| :| |||| gtcCCAGGGGACTCGGGACTAGg Shkbp1; Sb1 rno-miR-151* 8 30 aUGAU--CUGACACUCGAGGAGCu || | |:||||| ||:||:| cACGACCGGCTGTG-CCTTCTTGt Shkbp1; Sb1 rno-miR-193 63 89 gaCCCU--GAA--AC-AUC-CGGUCaa |||| ||| || |:| ||||| agGGGAGGCTTCCTGTTGGAGCCAGga Shkbp1; Sb1 rno-miR-204 44 64 uCCGUAUCCUACUG-UUUCCCUu || | || ||| |::|||| gGGACTCGG--GACTAGGGGGAg Shkbp1; Sb1 rno-miR-207 49 71 uuCCCUCCUCUCGGUCCUCUUCG |||| ||:| |||:||:|| tcGGGACTAGGGGGAGGGGAGGC Shkbp1; Sb1 rno-miR-211 38 64 uccGUUUCCU-A---CUG-UUUCCCUu ||::||| | ||| |::|||| tccCAGGGGACTCGGGACTAGGGGGAg Shkbp1; Sb1 rno-miR-212 15 39 CCGGCACUG----ACCUCUGACAAu |||:||| | || :||||| | GGCTGTGCCTTCTTGTGGACTGGTc Shkbp1; Sb1 rno-miR-224 82 108 auuugCCUUG-GUGAU--CACU-GAAC ||||| | :|| |||| |||| agccaGGAACTCTTTAGTGTGATCTTG Shkbp1; Sb1 rno-miR-23a 87 104 CCUUUAGGGACCGUUACACUA |||| ||::| |:|||||| GGAACTCTTT---AGTGTGAT Shkbp1; Sb1 rno-miR-23b 87 104 CCAUUAGGGACCGUUACACUA || | ||::| |:|||||| GGAACTCTTT---AGTGTGAT Shkbp1; Sb1 rno-miR-24 69 86 gacAAGGACGACUUGACUCGGU ||||||:|| |||||| ggcTTCCTGTTG----GAGCCA Shkbp1; Sb1 rno-miR-292-3p 30 57 ugugaguuuuGGACC-----GCCGUGAa || || ||| ||| tggactggtcCCAGGGGACTCGGGACTa Shkbp1; Sb1 rno-miR-296 54 76 UG-UCCUAACUCCCCCCCG--GGA || |||: |||||| ||| ||| ACTAGGG-GGAGGGGAGGCTTCCT Shkbp1; Sb1 rno-miR-31 14 32 GUCGAUACGGUCGUAGAACgga |:|||:||| | ||||| CGGCTGTGC---CTTCTTGtgg Shkbp1; Sb1 rno-miR-324-3p 40 67 GGUC------GUCGUGGACCCCGUCACC |||| |:| ||: |||| || || CCAGGGGACTCGGGACTAGGGGGAGGGG Shkbp1; Sb1 rno-miR-324-5p 52 72 ugUGGUUACGGGAUCCCCUACGc ||:|: | |||||| || ggACTAGGG--GGAGGGGAGGCt Shkbp1; Sb1 rno-miR-326 25 46 uGACCUCCU-UCCCGGGUCUCC || | ||| || |||||:|| tCTTGTGGACTGGTCCCAGGGG Shkbp1; Sb1 rno-miR-328 58 87 ugCCUUCCCGUCU------C--UCCCGGUC ||:|||| ||: | :| ||||| ggGGGAGGGGAGGCTTCCTGTTGGAGCCAG Shkbp1; Sb1 rno-miR-331 24 47 AAGA--UCCU-AUCCGGGUCCCCg |||| ||| |:| |||||||| TTCTTGTGGACTGGTCCCAGGGGa Shkbp1; Sb1 rno-miR-336 52 70 uCUGAUCUAUACCUUCCCACu |||||| : |||:||| | gGACTAG--GGGGAGGGGAGg Shkbp1; Sb1 rno-miR-337 66 88 uuUCCGUAGUAUAUCCUCGacuu |||| || |:| ||||| ggAGGCTTCCTGTTGGAGCcagg Shkbp1; Sb1 rno-miR-339 35 61 ACUCGAGGACC------UCCUG-UCCCu || |: || || :|||| |||| TG-GTCCCAGGGGACTCGGGACTAGGGg Shkbp1; Sb1 rno-miR-339 66 90 aCUC--GAGGAC--CUCCUGUCCcu ||| :||||| |: | |||| gGAGGCTTCCTGTTGGAGCCAGGaa Shkbp1; Sb1 rno-miR-343 40 65 aGACCCGUGUGC------CUCCCUCu | ||| || || |:||||| cCAGGGGACTCGGGACTAGGGGGAGg Shkbp1; Sb1 rno-miR-347 30 49 ACCCG--CUGGGUCUCCCUGu ||| | | ||||| ||||| TGGACTGGTCCCAG-GGGACt Shkbp1; Sb1 rno-miR-34a 145 179 uUGUUGGU--C---GAUUCU-------GUGACGGU | |:||| | |||| | |||||||| cAAAGCCACTGTCTCTAATAAAATCCTCACTGCCA Shkbp1; Sb1 rno-miR-351 34 55 GUCCGAGUUUCCCGAGGAGUCCcu | ||: | |:||| |||:|| CTGGTCCCAGGGG--ACTCGGGac Shkbp1; Sb1 rno-miR-378 64 90 ugugUCC--UGG---ACCUCAGUCCUc ||| || ||||| ||||| ggggAGGCTTCCTGTTGGAGCCAGGAa Shkbp1; Sb1 rno-miR-378 31 55 ugUGUCCUGG---ACCUCAGUCCUc || || || ||| ||:||| ggACTGGTCCCAGGGGACTCGGGAc Shkbp1; Sb1 rno-miR-412 43 65 ugCC-GAUCACCUGGUCCACUUCa || || | ||||:||| |:|| ggGGACTCG-GGACTAGGGGGAGg Shkbp1; Sb1 rno-miR-422b 21 44 CGGAAGA----CUGAGGUUCA-GGUCa ||||||| |||| :|| |||| GCCTTCTTGTGGACT---GGTCCCAGg Shkbp1; Sb1 rno-miR-449 154 179 uggucGAUUGUUAU----GUGACGGU ||||:|| | |||||||| tgtctCTAATAAAATCCTCACTGCCA Shkbp1; Sb1 rno-miR-483 40 70 uGUUCU----GCCCU----CCCCUCCUCACu ||:|: ||||| |||||||:| | cCAGGGGACTCGGGACTAGGGGGAGGGGAGg Shkbp1; Sb1 rno-miR-485 106 128 cuuaAGUAGUGC-CGGUCGGAGA ||: || | || |||||| ttggTCGCCAAGTTCCCGCCTCT Shkbp1; Sb1 rno-miR-96 91 117 ucguuuUUACAC---GAUCA-CGGUUu |:|||| :|:|| ||||| ctctttAGTGTGATCTTGGTCGCCAAg Shkbp1; Sb1 rno-miR-99a 41 63 GUGUUCU-AGCCUAGAUGCCCaa || ::|| ||||: ||| ||| CAGGGGACTCGGGACTAGGGGga Shkbp1; Sb1 rno-miR-99b 39 63 GCGUUCC---AGCCAAGAUGCCCac | ||:|| |||| ||| ||| CCCAGGGGACTCGGGACTAGGGGga Shkbp1; Sb1 rno-miR-331 40 47 -------------------AAGAU--CCUAUCC-GGGUCCCCG |||| ||| || |||||||| AGCCACGACCGGCUGUGCCUUCUUGUGGACUGGUCCCAGGGGA Shkbp1; Sb1 rno-miR-34a 172 179 UUG--------UUGGUCGAUUCU-------------GUGACGGU |:||| ||: |||||||| CUAAAAGCCAAAGCCA-CUGUCUCUAAUAAAAUCCUCACUGCCAA Shkbp1; Sb1 rno-miR-449 172 179 ------------UGGUC-----GAUUGUUAU----GUGACGGU :||| ||||:|| |||||||| CUAAAAGCCAAAGCCACUGUCUCUAAUAAAAUCCUCACUGCCAA

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Shkbp1 RAID00253444 rno-miR-34a-5p miRNA MIMAT0000815 Shkbp1 mRNA 292735 Prediction 0.1828 Shkbp1 RAID00862435 rno-miR-34b-5p miRNA MIMAT0000813 Shkbp1 mRNA 292735 Prediction 0.1828 Shkbp1 RAID03076146 rno-miR-449a-5p miRNA MIMAT0001543 Shkbp1 mRNA 292735 Prediction 0.1828 Shkbp1 RAID03499392 rno-miR-449c-5p miRNA MIMAT0017803 Shkbp1 mRNA 292735 Prediction 0.1828 Shkbp1 RAID03887570 rno-miR-34c-5p miRNA MIMAT0000814 Shkbp1 mRNA 292735 Prediction 0.1828