DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000554 rno-miR-324-3p 246216 Prpf19 ggucgucguggacccCGUCACc |||||| ugcagguuuuuguaaGCAGUGa 2 8 358 379 [rn4:1:213401886-213401907:+] 0.5959 120 6 -16.41 -0.1399 MIMAT0000591 rno-miR-343 246216 Prpf19 agacccgugugcCUCCCUCu ||||||| acuuuaggaggaGAGGGAGg 2 9 76 95 [rn4:1:213401604-213401623:+] 0.5959 140 7 -17.49 -0.3721 MIMAT0000591 rno-miR-343 246216 Prpf19 agACCCGUGUGCCUCC-CUCu || | ||| ||||| ||| ucUGAG-ACAGGGAGGUGAGc 2 19 302 321 [rn4:1:213401830-213401849:+] 0.5959 124 0 -22.66 -0.1241 MIMAT0004716 rno-miR-28* 246216 Prpf19 agguccUCGAGUGUUAGAUCAc ||| :::||||||| uuuguaAGC-AGUGAUCUAGUu 2 17 366 386 [rn4:1:213401894-213401914:+] 0.5959 146 7 -10.54 -0.8296 MIMAT0005278 rno-miR-466b 246216 Prpf19 guaccUGUAUGUGUGUGUGUau | | | | |||||| uaaaaAAAAAAAGCCACACAgu 3 18 391 412 [rn4:1:213401919-213401940:+] 0.5959 125 0 -8.03 -0.1739 MIMAT0005278 rno-miR-466b 246216 Prpf19 guaCCUGUAUGUGUGUGU-GUAu ||: : |||: |||| ||| uagGGGGGGACAUUCACAUCAUu 2 20 102 124 [rn4:1:213401630-213401652:+] 0.5959 123 0 -17.84 -0.5325 MIMAT0005289 rno-miR-881 246216 Prpf19 agauaagucuuuacgGUGUCAa |||||| aaaaaaaaaaagccaCACAGU- 2 8 392 412 [rn4:1:213401920-213401940:+] 0.5959 120 6 -8.39 -0.2097 MIMAT0005332 rno-miR-708* 246216 Prpf19 gaucUUCGAGUGUCAGAUCAAc |||| ::: ||||||| uuguAAGC-AGUGAUCUAGUUu 2 19 367 387 [rn4:1:213401895-213401915:+] 0.5959 148 7 -11.04 -1.0977 MIMAT0000564 rno-miR-328 246216 Prpf19 ugcCUUCCCGUCUC--UCCCG-GUc || || | ||| ||||| || gauGAUGGUCUGAGCCAGGGCACAu 2 20 138 162 [rn4:1:213401666-213401690:+] 0.5959 122 0 -16.66 -0.3029 MIMAT0000583 rno-miR-339-5p 246216 Prpf19 gcACUCGAGGACCUCCUGUCCCu | |||||:| : ||||||| uuUCAGCUCUUCUGAGACAGGGa 2 22 292 314 [rn4:1:213401820-213401842:+] 0.5959 165 7 -26.04 -0.6721 MIMAT0000611 rno-miR-135b 246216 Prpf19 aguGU-AUCCUUACUUUUCGGUau || || || |||||||| uuuCAUUAAAAAAAAAAAGCCAca 3 21 385 408 [rn4:1:213401913-213401936:+] 0.5959 139 0 -9.69 -0.2044 MIMAT0000791 rno-miR-22 246216 Prpf19 ugucaagaaguugACCGUCGAa |||||||| ccucccccaguggUGGCAGCUg 2 10 254 275 [rn4:1:213401782-213401803:+] 0.5959 145 7 -16.15 -0.3709 MIMAT0000793 rno-miR-23b 246216 Prpf19 ccAUUAGGGACCGUU-ACACUa |:| || || || ||||| ggUGAGCCAAGGGAACUGUGAa 2 20 315 336 [rn4:1:213401843-213401864:+] 0.5959 123 0 -18.15 -0.1527 MIMAT0000794 rno-miR-24 246216 Prpf19 gacaaggACGACUUGACUCGGu || ||: ||||||| gucuggaUGAUGGUCUGAGCCa 2 16 133 154 [rn4:1:213401661-213401682:+] 0.5959 155 7 -23.86 -0.5579 MIMAT0000798 rno-miR-27b 246216 Prpf19 cguCUUGAAU-CGGUGACACUu ||:| | | ||||||| gguGAGCCAAGGGAACUGUGAa 2 19 315 336 [rn4:1:213401843-213401864:+] 0.5959 145 7 -17.30 -0.3422 MIMAT0000799 rno-miR-27a 246216 Prpf19 cgCCUUGAAUCGG------UGACACUu |||: | |||| ||||||| agGGAGGUGAGCCAAGGGAACUGUGAa 2 20 310 336 [rn4:1:213401838-213401864:+] 0.5959 146 7 -22.11 -0.3422 MIMAT0000824 rno-miR-103 246216 Prpf19 agUAUCG-GGACAUGUUAC-GACGa :|:|| |||| | ||| |||| ugGUGGCAGCUGUUCCAUGCCUGCu 2 22 264 288 [rn4:1:213401792-213401816:+] 0.5959 128 0 -19.79 -0.3210 MIMAT0000826 rno-miR-107 246216 Prpf19 acUAUCG-GGACAUGUUAC-GACGa :|:|| |||| | ||| |||| ugGUGGCAGCUGUUCCAUGCCUGCu 2 22 264 288 [rn4:1:213401792-213401816:+] 0.5959 128 0 -23.42 -0.3210 MIMAT0004729 rno-miR-125a-3p 246216 Prpf19 ccgagggUUCUUGG-AGU-GGACa |:||||: ||| |||| gacauggAGGAACUGUCACCCUGu 2 16 204 227 [rn4:1:213401732-213401755:+] 0.5959 122 0 -17.54 -0.7224 MIMAT0000841 rno-miR-135a 246216 Prpf19 aguGU-AUCCUUAUUUUUCGGUau || || || ||||||||| uuuCAUUAAAAAAAAAAAGCCAca 3 21 385 408 [rn4:1:213401913-213401936:+] 0.5959 147 0 -11.25 -0.2044 MIMAT0000849 rno-miR-143 246216 Prpf19 acUCGAUGUCACGAAGUAGAGu ||:| | | || ||||||| acAGUU-CUGGGCCUCAUCUCa 2 21 16 36 [rn4:1:213401544-213401564:+] 0.6244 158 7 -18.63 -0.8959 MIMAT0000876 rno-miR-203 246216 Prpf19 gaucaccAGGAUUUGUAAAGUg |:| | ||||||| ggggacaUUCACAUCAUUUCAu 2 16 107 128 [rn4:1:213401635-213401656:+] 0.5959 147 7 -9.95 -0.8841 MIMAT0003179 rno-miR-542-3p 246216 Prpf19 aaagucaauagUUAGACAGUGu :| ||||||| cggacauggagGAACUGUCACc 2 12 202 223 [rn4:1:213401730-213401751:+] 0.5959 143 7 -12.48 -0.4378 MIMAT0005316 rno-miR-455 246216 Prpf19 gcUAC-AUCAG----GUUUCCGUGUAu ||| |:||| | |:||||||| ggAUGAUGGUCUGAGCCAGGGCACAUg 2 21 137 163 [rn4:1:213401665-213401691:+] 0.5959 154 7 -24.90 -0.2268

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G100687 Prpf19 Rattus norvegicus 246216

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Prpf19; Prp19 rno-miR-101a 10 26 GAAGUCAAUAGUGUCAUGACAU ||:||||||| ||| -----CUUGUCACAGUUCUGG- Prpf19; Prp19 rno-miR-101b 7 26 GAAGUCG--AUAGUGUCAUGACAU || |:||||||| ||| ----UGCCUUGUCACAGUUCUGG- Prpf19; Prp19 rno-miR-133a 56 80 UGUCGA--CCAA-CUUC-CCCUGGUU :|: ||| | | |||||: -GGGUGGGGGUGGGGGGUGGGACUU- Prpf19; Prp19 rno-miR-133b 56 80 AUCGA--CCAA-CUUC-CCCUGGUU :|: ||| | | |||||: GGGUGGGGGUGGGGGGUGGGACUU- Prpf19; Prp19 rno-miR-143 12 38 ACUCGAUGUCA-----CGAAGUAGAGU- |: ||||| || |||||||| --UGUCACAGUUCUGGGCCUCAUCUCAG Prpf19; Prp19 rno-miR-146 1 27 UUGGG-UACCUUAA---GUCAAGAGU- :||| ||| ||||||| : -GCCCUAUGCCUUGUCACAGUUCUGGG Prpf19; Prp19 rno-miR-150 56 73 GUGACCAUGUUCCCAACCCUCU- |||: :||| ||||:|: ---GGGUG--GGGG-UGGGGGGU Prpf19; Prp19 rno-miR-204 59 96 -UCCGUAUCCUACUGU-------------UUCCCUU- :|| :|:|| | : :|||||: UGGGGGUGGGGGGUGGGACUUUAGGAGGAGAGGGAGG Prpf19; Prp19 rno-miR-207 59 90 -UUCCCUCCUCUCG-------GUCCUCUUCG ::||| ||:|:|: :|||||:|| UGGGGGUGGGGGGUGGGACUUUAGGAGGAGA Prpf19; Prp19 rno-miR-211 61 96 -UCCGUUUCCUACUGU-----------UUCCCUU- :||: :||:||: | :|||||: GGGGUGGGGGGUGGGACUUUAGGAGGAGAGGGAGG Prpf19; Prp19 rno-miR-24 9 30 GACAAGGACGACUU---GACUCGGU |:||: |||:||| ----CCUUGUCACAGUUCUGGGCCU Prpf19; Prp19 rno-miR-296 59 82 UGUCCUAACUCCCC-CCC-GGGA- :|| ||:|||| ||| |::| -UGGGGGUGGGGGGUGGGACUUUA Prpf19; Prp19 rno-miR-298 1 12 CCUUCUUGUCGGGAGGAGACGG- ||||| |||| ---------GCCCUA---UGCCU Prpf19; Prp19 rno-miR-324-5p 56 77 UGUGGUUACGGG-AUCCCCUACGC- ::|| |:||||:|| | ----GGGUGGGGGUGGGGGGUGGGA Prpf19; Prp19 rno-miR-329 52 75 UUUUUCCAA-UCGACCCA-CACAA |:|:||| :| |||| ||| UAGAGGGUGGGGGUGGGGGGUGG- Prpf19; Prp19 rno-miR-330 1 16 AGAGACGUCCGGGACACGAAACG- ||||| ||| |||: ---------GCCCUAUGCCUUGUC Prpf19; Prp19 rno-miR-336 54 76 -UCUGAUCUAUACCUUCCCACU- ||: |:| :|||: |||||: GAGGGUGGGGGUGGG-GGGUGGG Prpf19; Prp19 rno-miR-339 71 95 -ACUC-GAGGACCUCCUGUCCCU- ||:| ||:: |||||| ||||| GUGGGACUUUAGGAGGAGAGGGAG Prpf19; Prp19 rno-miR-342 55 78 CUGCCCACGCUAAAGACACACUCU- ||||| |: |||:|| --AGGGUGGGGGUGGGGGGUGGGAC Prpf19; Prp19 rno-miR-343 71 93 AGACCCGUGUG--CCUCC-CUCU- |||| || ||||| |||: -GUGGG-ACUUUAGGAGGAGAGGG Prpf19; Prp19 rno-miR-345 18 50 -CGUGACCUG----------AUC-CCCAGUCGU |: ||||:| ||| ||||:|| AGUUCUGGGCCUCAUCUCAGUAGUGGGUUAGA- Prpf19; Prp19 rno-miR-347 40 63 -ACCCG--CUGGGUCUCCCUGU- ||||: || ::|||||| : GUGGGUUAGAGUUAGAGGGUGGG Prpf19; Prp19 rno-miR-370 21 47 UUGGUCCAAGGUGGGGUCG---UCCG- |::|| :||:|:|||: :||: -UCUGGGCCUCAUCUCAGUAGUGGGUU Prpf19; Prp19 rno-miR-412 64 90 UGCCGAUCACC-UGG--UCCACUUCA :|| :|||| ||: ||| |:|| GUGGGGGGUGGGACUUUAGGAGGAGA Prpf19; Prp19 rno-miR-483 52 76 UGUUCUGCC-CUCCC-CUCCUCACU- ||| || |:||| |:||:|||: --UAGAGGGUGGGGGUGGGGGGUGGG Prpf19; Prp19 rno-miR-101a 5 26 gaagucAAUAGUGUCAUGACau ||:||||||| ||| tatgccTTGTCACAGTTCTGgg Prpf19; Prp19 rno-miR-101b 3 26 GAAGUCG--AUAGUGUCAUGACau | | || |:||||||| ||| CCTATGCCTTGTCACAGTTCTGgg Prpf19; Prp19 rno-miR-133a 57 80 ugucgaCCAACUUC--CCCUGguu ||| |::| ||||| ggtgggGGTGGGGGGTGGGACttt Prpf19; Prp19 rno-miR-133b 58 80 aucgaCCAACUUC--CCCUGguu ||| |::| ||||| gtgggGGTGGGGGGTGGGACttt Prpf19; Prp19 rno-miR-143 16 36 acUCGAUGUCACGAAGUAGAGU ||:| | | || |||||||| acAGTT-CTGGGCCTCATCTCA Prpf19; Prp19 rno-miR-150 53 72 gugaCCAUGUUCCCAACCCUCu ||| ::|||| |||:| agagGGT--GGGGGTGGGGGGt Prpf19; Prp19 rno-miR-204 72 94 uCCGU---AUCCUACUGUUUCCCUu || | ||||| | |:||||| tGGGACTTTAGGAGG--AGAGGGAg Prpf19; Prp19 rno-miR-207 64 89 uuCCCUCCUCUCGG---UCCUCUUCg |||:|| |:| | |||||:|| gtGGGGGGTGGGACTTTAGGAGGAGa Prpf19; Prp19 rno-miR-211 75 94 uccguuUCCUACUGUUUCCCUu |||| | |:||||| gactttAGGAGG--AGAGGGAg Prpf19; Prp19 rno-miR-24 4 29 GACAAGG-AC---GACUUGACUCGGu || | || || | | |||:||| CTATGCCTTGTCACAGTTCTGGGCCt Prpf19; Prp19 rno-miR-296 53 74 UGUCCUAACUCC-CCCCCggga | |||:| |:|| ||||| AGAGGGTGGGGGTGGGGGgtgg Prpf19; Prp19 rno-miR-324-5p 53 75 ugugguuacgggAUCCCCUACgc |:||||:|| agagggtgggggTGGGGGGTGgg Prpf19; Prp19 rno-miR-329 51 70 uuUUUCCAAUCGACCCACACaa |:||| |:| ||||| | ttAGAGGGTGG--GGGTGGGgg Prpf19; Prp19 rno-miR-336 42 61 uCUGAUCUAUACCUUCCCACu |::|||| :| :|||||| gGGTTAGA-GTTAGAGGGTGg Prpf19; Prp19 rno-miR-339 72 93 ACUC-GAGGACCUCCUGUCCCU ||:| ||:: |||||| ||||| TGGGACTTTAGGAGGAGAGGGA Prpf19; Prp19 rno-miR-342 54 76 CUGCCCACGCUAAAGACACACUCU || ||||| |: | | |||:|| GA-GGGTGGGGGTGGGGGGTGGGA Prpf19; Prp19 rno-miR-343 70 95 agACCCGUG------UGC-CUCCCUCu |||| || | | ||||||| ggTGGG-ACTTTAGGAGGAGAGGGAGg Prpf19; Prp19 rno-miR-345 19 50 CGUGACCUG----------AUC-CCCAGUCgu |: ||||:| ||| ||||:|| GTTCTGGGCCTCATCTCAGTAGTGGGTTAGag Prpf19; Prp19 rno-miR-347 41 61 ACCCG--CUGGGUCUCCCugu ||||: || ::|||||| TGGGTTAGAGTTAGAGGGtgg Prpf19; Prp19 rno-miR-370 20 42 uuGGUCCAAGGUGGGGUCGUCcg |::|| :||:|:|||:|| ttCTGGGCCTCATCTCAGTAGtg Prpf19; Prp19 rno-miR-412 47 70 ugcCGAUCACCUG-GUCCACUUCa |:||| ||:: :||||::| agaGTTAGAGGGTGGGGGTGGGGg Prpf19; Prp19 rno-miR-483 50 74 uguUCUGCC-CUCCC-CUCCUCACu ||| || |:||| |:||:||| gttAGAGGGTGGGGGTGGGGGGTGg Prpf19; Prp19 rno-miR-343 88 95 AG-----------------ACCCG-----UGUGC-CUCCCUCU |||| : | | |||||||: AGAGGGUGGGGGUGGGGGGUGGGACUUUAGGAGGAGAGGGAGGU

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Prpf19 RAID00379942 rno-miR-455-5p miRNA MIMAT0005316 Prpf19 mRNA 246216 Prediction 0.1828 Prpf19 RAID00696417 rno-miR-135b-5p miRNA MIMAT0000611 Prpf19 mRNA 246216 Prediction 0.1828 Prpf19 RAID00764770 rno-miR-125a-3p miRNA MIMAT0004729 Prpf19 mRNA 246216 Prediction 0.1828 Prpf19 RAID00841852 rno-miR-542-3p miRNA MIMAT0003179 Prpf19 mRNA 246216 Prediction 0.2202 Prpf19 RAID00863185 rno-miR-143-3p miRNA MIMAT0000849 Prpf19 mRNA 246216 Prediction 0.1828 Prpf19 RAID00979806 rno-miR-3541 miRNA MIMAT0017795 Prpf19 mRNA 246216 Prediction 0.1828 Prpf19 RAID00995116 rno-miR-328a-3p miRNA MIMAT0000564 Prpf19 mRNA 246216 Prediction 0.1828 Prpf19 RAID01074039 rno-miR-203a-3p miRNA MIMAT0000876 Prpf19 mRNA 246216 Prediction 0.2202 Prpf19 RAID01239277 rno-miR-24-3p miRNA MIMAT0000794 Prpf19 mRNA 246216 Prediction 0.2202 Prpf19 RAID01272867 rno-miR-103-3p miRNA MIMAT0000824 Prpf19 mRNA 246216 Prediction 0.1828 Prpf19 RAID01351135 rno-miR-339-5p miRNA MIMAT0000583 Prpf19 mRNA 246216 Prediction 0.1828 Prpf19 RAID01618969 rno-miR-708-3p miRNA MIMAT0005332 Prpf19 mRNA 246216 Prediction 0.1828 Prpf19 RAID02061591 rno-miR-27a-3p miRNA MIMAT0000799 Prpf19 mRNA 246216 Prediction 0.1828 Prpf19 RAID02145337 rno-miR-27b-3p miRNA MIMAT0000798 Prpf19 mRNA 246216 Prediction 0.1828 Prpf19 RAID02217131 rno-miR-212-5p miRNA MIMAT0017158 Prpf19 mRNA 246216 Prediction 0.1828 Prpf19 RAID02265334 rno-miR-107-3p miRNA MIMAT0000826 Prpf19 mRNA 246216 Prediction 0.1828 Prpf19 RAID02872399 rno-miR-135a-5p miRNA MIMAT0000841 Prpf19 mRNA 246216 Prediction 0.1828 Prpf19 RAID03277594 rno-miR-28-3p miRNA MIMAT0004716 Prpf19 mRNA 246216 Prediction 0.1828 Prpf19 RAID03671934 rno-miR-23b-3p miRNA MIMAT0000793 Prpf19 mRNA 246216 Prediction 0.1828 Prpf19 RAID03904393 rno-miR-22-3p miRNA MIMAT0000791 Prpf19 mRNA 246216 Prediction 0.1828