DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000591 rno-miR-343 83499 Psmd4 agacccguguGCCUCCCUCu ||||||||| -------ggcCGGAGGGAGg 2 11 1 13 [rn4:2:189933268-189933280:-] 0.5569 150 7 -24.26 -0.4646 MIMAT0000591 rno-miR-343 83499 Psmd4 agacccguguGCCUCCCUCu ||||||||| -------ggcCGGAGGGAGg 2 11 1 13 [rn4:2:189933268-189933280:-] 0.5569 150 7 -24.26 -0.1585

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Psmd4; rCG_51785 rno-miR-1* 47 74 -CCCAUGU-AUUUCU---UCAUACACG- |||| : |||||| || |||||| GGGGUUGGAUAAAGACUUAG-AUGUGCU Psmd4; rCG_51785 rno-miR-132 1 42 GCUGGUA-------CCG--------------ACAUCUGACAAU |:||: ||: || :|||||| -GGCCGGAGGGAGGGGUAGCCGAGUCUGCCCUGGGGACUGUA- Psmd4; rCG_51785 rno-miR-133a 1 24 UGUCGACCAACUUCCCC--UGGUU- :|| || |:||||| :||:| --GGCCGGAGGGAGGGGUAGCCGAG Psmd4; rCG_51785 rno-miR-133b 1 24 AUCGACCAACUUCCCC--UGGUU- :|| || |:||||| :||:| -GGCCGGAGGGAGGGGUAGCCGAG Psmd4; rCG_51785 rno-miR-140* 1 36 ACAGGCA-------CCA-------AGAUGGGACACCAU | ||| ||| |||:||||| || -GGCCGGAGGGAGGGGUAGCCGAGUCUGCCCUG-GGG- Psmd4; rCG_51785 rno-miR-151* 60 87 AUG-AUCUGACACU---CGA-GGAGCU- || |||| |||| || |||:|| GACUUAGA-UGUGCUCUGCGGCCUUGAC Psmd4; rCG_51785 rno-miR-152 18 41 GGGUUCAAGACAGUA--CGUGACU ||:|| |||| | | |||| GCCGAG-UCUGCCCUGGGGACUGU Psmd4; rCG_51785 rno-miR-199a 8 36 -CUUGUCCA-----UCAGACUUGUGACCC- |:| :||| |||||| ||||| GGGAGGGGUAGCCGAGUCUGCC--CUGGGG Psmd4; rCG_51785 rno-miR-207 5 42 -UUCCCUCCUC-UCGGU----------CCUCUU-CG- :|||||||:| ||||: ||:|| |: GGAGGGAGGGGUAGCCGAGUCUGCCCUGGGGACUGUA Psmd4; rCG_51785 rno-miR-20b* 63 81 -GUCUUCACGAGUGUGACGUCA :||| |||||| |||:| UUAGAUGUGCUC----UGCGGC Psmd4; rCG_51785 rno-miR-212 1 42 CCGGCA------CU---------------GACCUCUGACAAU ||||| |: ||||:|||||| GGCCGGAGGGAGGGGUAGCCGAGUCUGCCCUGGGGACUGUA- Psmd4; rCG_51785 rno-miR-214 17 42 GACGGA-CAGACACGGAC----GACA- ||| ||||| |||| |||| -AGCCGAGUCUGC-CCUGGGGACUGUA Psmd4; rCG_51785 rno-miR-292-3p 60 85 UGUGAGUUUUGGAC---CGCCGUGAA- |||:|:| : ||||| ||| -GACUUAGAUGUGCUCUGCGGC-CUUG Psmd4; rCG_51785 rno-miR-296 1 22 -UGUCCUAACUCCCCCCCGGGA :| ||| |||||| ||| GGCCGGAGGGAGGGGUAGCCG- Psmd4; rCG_51785 rno-miR-298 8 31 -CCUUCUUGUCGGGAGGAGACGG- |||:| :|||| |||||| GGGAGGGGUAGCCGAG-UCUGCCC Psmd4; rCG_51785 rno-miR-324-5p 17 51 UGUGGUU---ACGGGAUCC--------CCUACGC- :||:| ||||||:|| ||||| | -AGCCGAGUCUGCCCUGGGGACUGUAAGGAUGGGG Psmd4; rCG_51785 rno-miR-326 1 37 -UGACCUCCUUCC-------------CGGGUCUCC- :| |||||:||| |||| |:|| GGCCGGAGGGAGGGGUAGCCGAGUCUGCCCUGGGGA Psmd4; rCG_51785 rno-miR-328 8 31 UGCCUUCCCGUCU-CUCC--CGGUC |||:|||:|| ||| ||| -GGGAGGGGUAGCCGAGUCUGCCC- Psmd4; rCG_51785 rno-miR-331 11 37 AAGAUCCUAUC--------CGGGUCCCCG :||:||| |||| |||| ---AGGGGUAGCCGAGUCUGCCCUGGGGA Psmd4; rCG_51785 rno-miR-336 1 18 UCUGAUCUAUACCUUCCCACU |:| :|| |||:|||| -GGCCGGAG--GGAGGGGUA- Psmd4; rCG_51785 rno-miR-339 20 52 ACUCGA---GGACC--------UCCUGUCCCU |||: ||||| ||||::||| CGAGUCUGCCCUGGGGACUGUAAGGAUGGGGU Psmd4; rCG_51785 rno-miR-343 1 15 AGACCCGUGUGCCUCCCUCU- ||| |||||||||: ----GGC---CGGAGGGAGGG Psmd4; rCG_51785 rno-miR-347 12 39 ACCCGCUGGGUC--------UCCCUGU |||: :|| || :||||| GGGGUAGCCGAGUCUGCCCUGGGGACU Psmd4; rCG_51785 rno-miR-378 29 57 UGUGUCCUGG-------ACCUCAGUCCUC | :||||: |||:||: ||| CCUGGGGACUGUAAGGAUGGGGUU-GGAU Psmd4; rCG_51785 rno-miR-379 12 31 AUGCAAGGUAUCAGAUGGU : || | |||||:|| GGGGUAGCCGAGUCUGCCC Psmd4; rCG_51785 rno-miR-409-5p 3 22 -GUUUCAACGAGCCCAUUGGA |::|| |||||:|| CCGGAGGGAG--GGGUAGCCG Psmd4; rCG_51785 rno-miR-483 1 26 -UGUUCUGCCCUCCCC-UC--CUCACU :| :|| |||||||| || |||| GGCCGGA-GGGAGGGGUAGCCGAGUC- Psmd4; rCG_51785 rno-miR-501 23 48 AAAGUGGG--UCCCUGU--UUCCUAA || || :||||| |||||| -GUCUGCCCUGGGGACUGUAAGGAUG Psmd4; rCG_51785 rno-miR-7 86 113 -UUGUUUUAG--UGA---UCAGAAGGU |||::||| :|| |||:|||| CAACGGAAUAAAGCUUGGAGUUUUCCC Psmd4; rCG_51785 rno-miR-1* 48 72 CCC-AUGUAUUUCU---UCAUACACG ||| |: ||||||| || |||||| GGGTTGGATAAAGACTTAG-ATGTGC Psmd4; rCG_51785 rno-miR-132 20 42 GCUGGUAC-CGACAUCUGACAau ||| : || ||| :|||||| CGAGTCTGCCCTGGGGACTGTaa Psmd4; rCG_51785 rno-miR-133a 15 40 ugUCGAC-CA-AC--UUCCCCUGguu ||| | || || |||||| gtAGCCGAGTCTGCCCTGGGGACtgt Psmd4; rCG_51785 rno-miR-133b 16 40 AUCGAC-CA-AC--UUCCCCUGguu |||| | || || |||||| TAGCCGAGTCTGCCCTGGGGACtgt Psmd4; rCG_51785 rno-miR-140* 16 37 acaGGCACCAAGAUGGGACACCau ||| | |||:||||| || tagCCGAG--TCTGCCCTGGGGac Psmd4; rCG_51785 rno-miR-151* 55 79 augaUCUGA--C-ACUCGAGGAGCu ||||| | || ||||: || ataaAGACTTAGATGTGCTCTGCGg Psmd4; rCG_51785 rno-miR-152 13 33 ggguucaagaCAGUACGUGACu ||| ||| ||| gggtagccgaGTC-TGCCCTGg Psmd4; rCG_51785 rno-miR-199a 9 34 CUUGUCCAUCAGACU----UGUGACCC |:| :||||| | || :| ||||| GGAGGGGTAG-CCGAGTCTGCCCTGGG Psmd4; rCG_51785 rno-miR-207 1 19 uuCCCUCCUCUCGGUCCUCUUCG || ||||:| |||:| ||| --GGCCGGAGGG--AGGGGTAGC Psmd4; rCG_51785 rno-miR-20b* 64 80 gUCUUCACGAGUGUGACGUCa ||| ||||| ||||:| tAGATGTGCT----CTGCGGc Psmd4; rCG_51785 rno-miR-212 17 42 cCGGC----AC-UGACCUCUGACAau |||| || ||||:|||||| aGCCGAGTCTGCCCTGGGGACTGTaa Psmd4; rCG_51785 rno-miR-214 16 40 gaCGG-ACAGACACGGAC----GACA ||| ||||| |||| |||| taGCCGAGTCTG-CCCTGGGGACTGT Psmd4; rCG_51785 rno-miR-292-3p 59 83 UGUGAGUUU---UGGACCGCCGUGAA | |||:|:| :|: ||||| ||| AGACTTAGATGTGCTCTGCGGC-CTT Psmd4; rCG_51785 rno-miR-296 2 22 uGUCCUAACUCCCCCC--CGGga | ||| |:| |||| ||| gCCGGA--GGGAGGGGTAGCCga Psmd4; rCG_51785 rno-miR-298 5 29 CCUUCUUGUCGGGAGG---AGACGG |||:|:| :| : || |||||| GGAGGGAGGGGTAGCCGAGTCTGCC Psmd4; rCG_51785 rno-miR-324-5p 16 41 uguGGUU---ACGGGAUCCCCU-ACgc ||:| |||||| ||||| || tagCCGAGTCTGCCCT-GGGGACTGta Psmd4; rCG_51785 rno-miR-326 2 35 uGACCUCCUUCC-------------CGGGUCUCC | |||||:||| |||| |:|| gCCGGAGGGAGGGGTAGCCGAGTCTGCCCTGGGG Psmd4; rCG_51785 rno-miR-328 1 18 ugCCUUCCCGUCUCUCCCGGUC || || ||:||||| :|| --GGCCGG--AGGGAGGGGTAG Psmd4; rCG_51785 rno-miR-331 13 36 aagAUC--CU-AUCCGGGUCCCCg ||| || | |||| |||| gggTAGCCGAGTCTGCCCTGGGGa Psmd4; rCG_51785 rno-miR-336 1 18 uCUGAUCUAUACCUUCCCAcu |:| :| | |||:|||| -GGCCGG--AGGGAGGGGTag Psmd4; rCG_51785 rno-miR-347 1 13 acccgcugGGUCUCCCUgu ||:|||||| ------ggCCGGAGGGAgg Psmd4; rCG_51785 rno-miR-347 21 38 acCCGCUGGGUCUCCCUGu | | :||| | ||||| gaGTCTGCCCTG-GGGACt Psmd4; rCG_51785 rno-miR-378 21 46 ugugucCUGGACCU----CAGUCCUc | |||||: || |||| gagtctGCCCTGGGGACTGTAAGGAt Psmd4; rCG_51785 rno-miR-409-5p 4 21 GUUUCAACGAGCCCAUUGGa |::|| | |||||:|| CGGAG--GGAGGGGTAGCCg Psmd4; rCG_51785 rno-miR-501 24 47 aaaguGGGUCCCUG--UUUCCUAa ||::||||| |||||| tctgcCCTGGGGACTGTAAGGATg Psmd4; rCG_51785 rno-miR-7 87 112 UUGUUUUAGU--GA---UCAGAAGGu |||::||| | || |||:|||| AACGGAATAAAGCTTGGAGTTTTCCc