DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000591 rno-miR-343 296161 Ubox5 agacccgugugCCUCCCUCu |||||||| aaccccauuugGGAGGGAGa 2 10 22 41 [rn4:3:118219471-118219490:-] 0.5110 145 7 -20.40 -0.1709 MIMAT0000594 rno-miR-345-5p 296161 Ubox5 cgugACCUGAUCCCCAGUCGu || ::| ||||||| gcugUGAGUUCAAGGUCAGCc 2 18 1663 1683 [rn4:3:118217829-118217849:-] 0.4930 145 7 -17.50 -0.1207 MIMAT0004655 rno-miR-345-3p 296161 Ubox5 agaGGUCUGGGGAU--CAAGUCCc |||| |||| | ||||||| gagCCAG-CCCCAACUGUUCAGGa 2 20 236 258 [rn4:3:118219254-118219276:-] 0.5110 160 7 -27.03 -0.1452 MIMAT0000604 rno-miR-350 296161 Ubox5 cacuuucacaUACC-CGAAACACUu |||| |:||||||| caaccuucuaAUGGAGUUUUGUGAc 2 15 291 315 [rn4:3:118219197-118219221:-] 0.5110 157 7 -16.19 -0.1641 MIMAT0004720 rno-miR-30e* 296161 Ubox5 cgACAUUUGUAGGCUGACUUUc | | || : | ||||||| ugUCUCAAAGAC--ACUGAAAu 2 21 1704 1723 [rn4:3:118217789-118217808:-] 0.4930 141 7 -7.43 -0.3391 MIMAT0004721 rno-miR-30b-3p 296161 Ubox5 cugcauuuGUAGGUGUAGGGUc | | ||||||||| ugguggcuCCUGCACAUCCCAc 2 15 1188 1209 [rn4:3:118218303-118218324:-] 0.5141 154 7 -19.67 -0.1037 MIMAT0004722 rno-miR-30d* 296161 Ubox5 cgUCGUUUGU----AGA----C--UGACUUUc |||||||| ||| | ||||||| auAGCAAACACUUGUCUCAAAGACACUGAAAu 2 21 1692 1723 [rn4:3:118217789-118217820:-] 0.4930 145 7 -20.20 -0.3610 MIMAT0000809 rno-miR-30a* 296161 Ubox5 cgacGUUUGUAGGCUGACUUUc |||| | | ||||||| gucuCAAAGA--C-ACUGAAAu 2 19 1705 1723 [rn4:3:118217789-118217807:-] 0.4930 145 7 -9.29 -0.3391 MIMAT0004732 rno-miR-135a* 296161 Ubox5 aaaguaccgaAGGUAGGGAUGu ||||||||||| gugcucuuucUCCAUCCCUACc 2 13 1574 1595 [rn4:3:118217917-118217938:-] 0.5105 160 7 -21.15 -0.2932 MIMAT0004740 rno-miR-218* 296161 Ubox5 gcGCCAC-GA--ACUGUCUUGGUAc | ||| || || | ||||||| ggCUGUGACUACUGUCUGAACCAUc 2 21 771 795 [rn4:3:118218717-118218741:-] 0.5090 154 7 -15.84 -0.1363 MIMAT0003116 rno-miR-501 296161 Ubox5 aaaGUGGGUCC-CUGUU-UCCUAa ::|::||| |||| ||||| uccUGCUUAGGCAACAACAGGAUg 2 20 143 166 [rn4:3:118219346-118219369:-] 0.5110 126 0 -16.36 -0.1998 MIMAT0003205 rno-miR-409-3p 296161 Ubox5 ccccAAGUGGCUCGU-UGUAa ||: || |||| |||| ugauUUUCCCUAGCAUACAUg 2 17 1606 1626 [rn4:3:118217886-118217906:-] 0.5105 124 0 -10.66 -0.2295 MIMAT0003212 rno-miR-20b-3p 296161 Ubox5 ggucuucACGAGUGUG-ACGUCa ||| |||| ||||| ccaccccUGCAGACACUUGCAGc 2 16 408 430 [rn4:3:118219082-118219104:-] 0.5638 123 0 -17.75 -0.1895 MIMAT0003378 rno-miR-378* 296161 Ubox5 uguguccuGGACCUCAGUCCUc :| | ||||||| augugcuuUCAGAUGUCAGGAg 2 15 1044 1065 [rn4:3:118218447-118218468:-] 0.5116 142 7 -17.19 -0.3192 MIMAT0005280 rno-miR-743b 296161 Ubox5 agauaagucauacCACAGAAAg |||||||| aggaaaaugggaaGUGUCUUUa 2 10 638 659 [rn4:3:118218853-118218874:-] 0.5090 145 7 -10.58 -0.3355 MIMAT0005288 rno-miR-880 296161 Ubox5 agaugagucuuacUUACCUCAu |||||||| cauacaaccuucuAAUGGAGUu 2 10 287 308 [rn4:3:118219204-118219225:-] 0.5110 145 7 -11.27 -0.4416 MIMAT0005288 rno-miR-880 296161 Ubox5 agaUGAGUCUUACUUACCUCAu | |:| | ||||||| caaAAUUAAACCUUAUGGAGUc 2 20 828 849 [rn4:3:118218663-118218684:-] 0.5090 143 7 -9.20 -0.5485 MIMAT0005328 rno-miR-673 296161 Ubox5 gaggUUCCUGGCCUCGACACUc ||||||: ||||||| ucugAAGGACU---GCUGUGAg 2 19 1652 1670 [rn4:3:118217842-118217860:-] 0.4930 154 7 -25.24 -0.2005 MIMAT0005337 rno-miR-760-3p 296161 Ubox5 aggGGUGUCUGGGUCUCGGc |:|| | |||||||| ccaCUACCCAACCAGAGCCa 2 18 222 241 [rn4:3:118219271-118219290:-] 0.5110 157 7 -23.82 -0.2103 MIMAT0012828 rno-miR-362 296161 Ubox5 uaAGUGUGGA-UCCAAGGUUCCUAa | ||| :| | ||| ||||||| agUGACAGUUGACGUU-CAAGGAUu 2 23 439 462 [rn4:3:118219050-118219073:-] 0.5638 159 7 -18.96 -0.2570 MIMAT0012830 rno-miR-504 296161 Ubox5 cugucucacgucuGGUCCCAGa :||||||| agccuucucugccUCAGGGUCa 2 10 330 351 [rn4:3:118219161-118219182:-] 0.5374 141 7 -15.63 -0.1733 MIMAT0012833 rno-miR-582 296161 Ubox5 ucaUUGACCAACUUGUUGACAu |:|| | ||||||| aucAGCUCCCUUUCCAACUGUa 2 20 717 738 [rn4:3:118218774-118218795:-] 0.5090 143 7 -12.10 -0.3549 MIMAT0012844 rno-miR-665 296161 Ubox5 ucccuggagucGGAGGACCa |||||||| guucaaggauuCCUCCUGGa 2 10 452 471 [rn4:3:118219041-118219060:-] 0.5638 145 7 -21.08 -0.2436 MIMAT0012844 rno-miR-665 296161 Ubox5 uccCUGGAGUCGGAGGACCa || | || :||||||| ucuGAAC-CA-UCUCCUGGg 2 18 785 802 [rn4:3:118218710-118218727:-] 0.5090 145 7 -17.24 -0.1560 MIMAT0000566 rno-miR-329 296161 Ubox5 uuuuuccaaucGACCCACACAa || ||||||| cagccucccuuCUAGGUGUGUg 2 12 1219 1240 [rn4:3:118218272-118218293:-] 0.5141 147 7 -12.49 -0.2274 MIMAT0000566 rno-miR-329 296161 Ubox5 uuuuuccaAUCGA--CCCACACAa || || ||||||| ggcuugaaUACCUCAUGGUGUGUu 2 15 93 116 [rn4:3:118219396-118219419:-] 0.5110 141 7 -12.68 -0.3042 MIMAT0000589 rno-miR-342-3p 296161 Ubox5 ugcccacgcuaaAGACACACUCu |||||||||| agccuacuuuccUCUGUGUGAGu 2 12 1338 1360 [rn4:3:118218152-118218174:-] 0.5064 155 7 -17.81 -0.1436 MIMAT0000611 rno-miR-135b 296161 Ubox5 agUGUAUCCUUACU-UUUCGGUAu ||| |:|||| |||||||| caACAACAGGAUGACAAAGCCAUa 2 22 154 177 [rn4:3:118219335-118219358:-] 0.5110 168 7 -21.28 -0.2904 MIMAT0000790 rno-miR-21 296161 Ubox5 agUUGUAGUCAGAC-UAU-UCGAu |: | :|| ||| ||| |||| aaAGAAAUAGACUGCAUAUAGCUc 2 21 852 875 [rn4:3:118218637-118218660:-] 0.5090 123 0 -9.27 -0.1630 MIMAT0000792 rno-miR-23a 296161 Ubox5 ccuuuAGGGACCGUUACACUa || | | ||||||| uccccUCACCGUAAAUGUGAu 2 17 1513 1533 [rn4:3:118217979-118217999:-] 0.5214 148 7 -14.20 -0.2720 MIMAT0000793 rno-miR-23b 296161 Ubox5 ccauuAGGGACCGUUACACUa || | | ||||||| uccccUCACCGUAAAUGUGAu 2 17 1513 1533 [rn4:3:118217979-118217999:-] 0.5214 148 7 -14.20 -0.2720 MIMAT0000841 rno-miR-135a 296161 Ubox5 agUG-UAUCCUUAUUUUUCGGUAu || | |||| | |||||||| caACAACAGGAUGACAAAGCCAUa 2 22 154 177 [rn4:3:118219335-118219358:-] 0.5110 164 7 -18.81 -0.2904 MIMAT0000842 rno-miR-136 296161 Ubox5 agguaGUA-GUU--UUGUUUACCUCa ||| ||| | ||||||| uucugCAUACAACCUUCUAAUGGAGu 2 19 282 307 [rn4:3:118219205-118219230:-] 0.5110 144 7 -14.42 -0.3783 MIMAT0000862 rno-miR-185 296161 Ubox5 aguccUUGACGGAAAGAGAGGu |||| || ||||||| acaucAACU-CC--UCUCUCCu 2 18 1093 1111 [rn4:3:118218401-118218419:-] 0.5141 148 7 -18.51 -0.1004 MIMAT0000878 rno-miR-205 296161 Ubox5 gucugaggccACCU-UACUUCCu || | ||||||| ggagggagacUGAAGAUGAAGGa 2 13 33 55 [rn4:3:118219457-118219479:-] 0.5110 143 7 -16.32 -0.1489 MIMAT0000888 rno-miR-218 296161 Ubox5 ugUACCA--AUC--UAGUUCGUGUu ||||| :| :|:||||||| ccAUGGUAGCGGCUGUUAAGCACAu 2 20 364 388 [rn4:3:118219124-118219148:-] 0.5638 149 7 -19.91 -0.2035 MIMAT0000903 rno-miR-320 296161 Ubox5 agcgGGAGAGUUGG--GUCGAAAa ||| |:: :| ||||||| agugCCUGUUGUUCUUCAGCUUUg 2 19 1122 1145 [rn4:3:118218367-118218390:-] 0.5141 149 7 -19.15 -0.2039 MIMAT0003119 rno-miR-224 296161 Ubox5 auUUGCCUUGGUGAUCACUGAAc ||:|||:: :| ||||||| cuAAUGGAGU--UUUGUGACUUg 2 22 298 318 [rn4:3:118219194-118219214:-] 0.5110 158 7 -23.30 -0.1800 MIMAT0003123 rno-miR-377 296161 Ubox5 gguuuucaacgGAAACACACUa |||||||||| uuguucuucagCUUUGUGUGAc 2 12 1130 1151 [rn4:3:118218361-118218382:-] 0.5141 155 7 -14.85 -0.2488 MIMAT0003192 rno-miR-379 296161 Ubox5 ggAUGCA-AGGUAUC-AGAUGGu ||| | ||:: || |||||| guUACCUCUCUGCAGCUCUACCa 2 20 1402 1424 [rn4:3:118218088-118218110:-] 0.5064 126 6 -18.28 -0.1009 MIMAT0003203 rno-miR-485 296161 Ubox5 cuuaaGU-AG-UGCCG-GUCGGAGa || || ||| | ||||||| cauccCACUCUACGCCUCAGCCUCc 2 18 1202 1226 [rn4:3:118218286-118218310:-] 0.5141 150 7 -19.99 -0.1195 MIMAT0005320 rno-miR-495 296161 Ubox5 uucuuCACGUGGUACAAACAAa | || |||||||||| cccuuGAGCCACAUGUUUGUUg 2 18 981 1002 [rn4:3:118218510-118218531:-] 0.5090 161 7 -14.96 -0.1387 MIMAT0005341 rno-miR-488 296161 Ubox5 cugguucuuugucGGAAAGUu ||||||| ggcuacguuuuuuCCUUUCAa 2 9 810 830 [rn4:3:118218682-118218702:-] 0.5090 140 7 -13.38 -1.1742

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G116340 Ubox5 Rattus norvegicus 296161

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Ubox5 RAID00074159 rno-miR-665 miRNA MIMAT0012844 Ubox5 mRNA 296161 Prediction 0.1828 Ubox5 RAID00107804 rno-miR-342-3p miRNA MIMAT0000589 Ubox5 mRNA 296161 Prediction 0.1828 Ubox5 RAID00366622 rno-miR-92a-1-5p miRNA MIMAT0017107 Ubox5 mRNA 296161 Prediction 0.1828 Ubox5 RAID00805686 rno-miR-379-5p miRNA MIMAT0003192 Ubox5 mRNA 296161 Prediction 0.1828 Ubox5 RAID00850145 rno-miR-3576 miRNA MIMAT0017862 Ubox5 mRNA 296161 Prediction 0.1828 Ubox5 RAID00887036 rno-miR-488-3p miRNA MIMAT0005341 Ubox5 mRNA 296161 Prediction 0.2202 Ubox5 RAID00895783 rno-miR-23a-3p miRNA MIMAT0000792 Ubox5 mRNA 296161 Prediction 0.1828 Ubox5 RAID00898790 rno-miR-3541 miRNA MIMAT0017795 Ubox5 mRNA 296161 Prediction 0.1828 Ubox5 RAID01128482 rno-miR-3552 miRNA MIMAT0017813 Ubox5 mRNA 296161 Prediction 0.1828 Ubox5 RAID01403619 rno-miR-7578 miRNA MIMAT0029579 Ubox5 mRNA 296161 Prediction 0.1828 Ubox5 RAID01675601 rno-miR-672-3p miRNA MIMAT0017312 Ubox5 mRNA 296161 Prediction 0.1828 Ubox5 RAID01687457 rno-miR-666-3p miRNA MIMAT0017371 Ubox5 mRNA 296161 Prediction 0.1828 Ubox5 RAID01772817 rno-miR-329-3p miRNA MIMAT0000566 Ubox5 mRNA 296161 Prediction 0.2202 Ubox5 RAID01777802 rno-miR-880-3p miRNA MIMAT0005288 Ubox5 mRNA 296161 Prediction 0.1828 Ubox5 RAID01805820 rno-miR-135a-3p miRNA MIMAT0004732 Ubox5 mRNA 296161 Prediction 0.1828 Ubox5 RAID01880742 rno-miR-377-3p miRNA MIMAT0003123 Ubox5 mRNA 296161 Prediction 0.1828 Ubox5 RAID02144157 rno-miR-135a-5p miRNA MIMAT0000841 Ubox5 mRNA 296161 Prediction 0.2202 Ubox5 RAID02155328 rno-miR-362-3p miRNA MIMAT0017357 Ubox5 mRNA 296161 Prediction 0.1828 Ubox5 RAID02366740 rno-miR-485-5p miRNA MIMAT0003203 Ubox5 mRNA 296161 Prediction 0.1828 Ubox5 RAID02535670 rno-miR-205 miRNA MIMAT0000878 Ubox5 mRNA 296161 Prediction 0.1828 Ubox5 RAID02651928 rno-miR-1956-3p miRNA MIMAT0035736 Ubox5 mRNA 296161 Prediction 0.1828 Ubox5 RAID02828889 rno-miR-6314 miRNA MIMAT0025047 Ubox5 mRNA 296161 Prediction 0.1828 Ubox5 RAID02959846 rno-miR-136-5p miRNA MIMAT0000842 Ubox5 mRNA 296161 Prediction 0.2202 Ubox5 RAID02985511 rno-miR-495 miRNA MIMAT0005320 Ubox5 mRNA 296161 Prediction 0.1828 Ubox5 RAID02997167 rno-miR-135b-5p miRNA MIMAT0000611 Ubox5 mRNA 296161 Prediction 0.2202 Ubox5 RAID03046779 rno-miR-320-3p miRNA MIMAT0000903 Ubox5 mRNA 296161 Prediction 0.1828 Ubox5 RAID03191408 rno-miR-21-5p miRNA MIMAT0000790 Ubox5 mRNA 296161 Prediction 0.1828 Ubox5 RAID03230952 rno-miR-23b-3p miRNA MIMAT0000793 Ubox5 mRNA 296161 Prediction 0.1828 Ubox5 RAID03233757 rno-miR-185-5p miRNA MIMAT0000862 Ubox5 mRNA 296161 Prediction 0.2202 Ubox5 RAID03349102 rno-miR-218a-5p miRNA MIMAT0000888 Ubox5 mRNA 296161 Prediction 0.1828 Ubox5 RAID03464529 rno-miR-224-5p miRNA MIMAT0003119 Ubox5 mRNA 296161 Prediction 0.1828