DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000574 rno-miR-140* 362281 Rae1 ggcacCAAGAUGGGACACCAu | | :||||||||| cugcuGAUGAGCCCUGUGGUg 2 17 250 270 [rn4:3:163877901-163877921:+] 0.5663 152 7 -23.18 -0.2882 MIMAT0004654 rno-miR-344-5p 362281 Rae1 ggaCCUUAGAUCGGUCCUC-GGACu ||:| ||: : | ||| |||| ggaGGGAACUGCUGAUGAGCCCUGu 2 22 242 266 [rn4:3:163877893-163877917:+] 0.5663 125 0 -18.37 -0.3335 MIMAT0000598 rno-miR-347 362281 Rae1 acccgcuGGGUCUCCCUGu ||::||||||| guccaccCCUGGAGGGACu 2 13 76 94 [rn4:3:163877727-163877745:+] 0.5136 152 7 -20.93 -0.2033 MIMAT0004731 rno-miR-125b* 362281 Rae1 uccaggGUUCUCGGAC-UGAACa ||: ||: || ||||| caugagCAGCAGUGUGUACUUGa 2 17 211 233 [rn4:3:163877862-163877884:+] 0.5245 120 0 -13.48 -0.3442 MIMAT0000900 rno-miR-298 362281 Rae1 cccuUCUUGUCG-GGAGGAGACGg :||:| | |||||||||| ugucGGAGCCCCACCUCCUCUGCa 2 20 18 41 [rn4:3:163877669-163877692:+] 0.5027 162 7 -27.57 -0.2055 MIMAT0005319 rno-miR-484 362281 Rae1 uaGCCCUCCCCUG------ACUC-GGACu :||||||| || |||| |||| guUGGGAGGGAACUGCUGAUGAGCCCUGu 2 21 238 266 [rn4:3:163877889-163877917:+] 0.5663 123 0 -30.33 -0.3362 MIMAT0005338 rno-miR-770 362281 Rae1 gcaccgggUCUGUGCACCACGa || | :||||||: ugcugaugAGCCCUGUGGUGUu 2 15 251 272 [rn4:3:163877902-163877923:+] 0.5663 134 0 -21.60 -0.1042 MIMAT0012826 rno-miR-220 362281 Rae1 uccagagACU-GUGACACCACc ||| | |||||||| cugcugaUGAGCCCUGUGGUGu 2 15 250 271 [rn4:3:163877901-163877922:+] 0.5663 153 7 -18.77 -0.7257 MIMAT0012853 rno-miR-761 362281 Rae1 acACAGUCAAAGU--GGGACGACg | || || || |||||||| ucUCUCCAUUCCACUCCCUGCUGc 2 21 137 160 [rn4:3:163877788-163877811:+] 0.5245 155 7 -20.36 -0.1860 MIMAT0000608 rno-miR-351 362281 Rae1 agUCCGAGU---UUC--CCGAGGAG-UCCCu || |||| ||| || :||| |||| ugAGACUCAAUGAAGUCGGGGUCUCGAGGGg 2 24 178 208 [rn4:3:163877829-163877859:+] 0.5245 121 0 -24.62 -0.2517 MIMAT0000796 rno-miR-26a 362281 Rae1 ucggauagGACCUA-AUGAACUu | | :| ||||||| augagcagCAGUGUGUACUUGAc 2 15 212 234 [rn4:3:163877863-163877885:+] 0.5245 141 7 -10.55 -0.1096 MIMAT0000797 rno-miR-26b 362281 Rae1 uggauagGACUUA-AUGAACUu | | :| ||||||| ugagcagCAGUGUGUACUUGAc 2 15 213 234 [rn4:3:163877864-163877885:+] 0.5245 141 7 -8.15 -0.1096 MIMAT0000797 rno-miR-26b 362281 Rae1 ugGAUAGGACUUAAUG-AACUu :||| | || ||| |||| uuUUAUAAUAAAAUACUUUGAa 2 20 271 292 [rn4:3:163877922-163877943:+] 0.6081 123 0 -6.71 -1.0891 MIMAT0000829 rno-miR-125a-5p 362281 Rae1 aguguccaauuUCCCAGAG-UCCCu :||||||| |||| ucaaugaagucGGGGUCUCGAGGGg 2 14 184 208 [rn4:3:163877835-163877859:+] 0.5245 125 0 -24.64 -0.2562 MIMAT0000830 rno-miR-125b-5p 362281 Rae1 agugUUCAAUCCCAGAG-UCCCu |||| :||||||| |||| aaugAAGUCGGGGUCUCGAGGGg 2 19 186 208 [rn4:3:163877837-163877859:+] 0.5245 142 0 -29.52 -0.2495 MIMAT0000851 rno-miR-145 362281 Rae1 ucCCUAAG-GACCCUUUUGAC-CUg ||:||| || |::||||| || gcGGGUUCUCUAAGGGAACUGAGAc 2 22 159 183 [rn4:3:163877810-163877834:+] 0.5245 132 0 -24.27 -0.2695 MIMAT0000862 rno-miR-185 362281 Rae1 agUCCUUGACGGAAAGAGAGGu :| ::|| || ||||||| ccGGCGGCUUGCUGUCUCUCCa 2 21 123 144 [rn4:3:163877774-163877795:+] 0.5245 156 7 -24.34 -0.2997 MIMAT0000885 rno-miR-214 362281 Rae1 gacggacagacACGGACGACa | ||||||| cuccauuccacUCCCUGCUGc 2 11 140 160 [rn4:3:163877791-163877811:+] 0.5245 142 7 -13.96 -0.1860

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G043320 Rae1 Rattus norvegicus 362281

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Rae1; Mrnp41 rno-let-7b 116 142 -UUGGUG---UGUUGGAUGAUGGAGU |:|| :|::|:|:||::||| CAGCCUCCCGGCGGCUUGCUGUCUCU Rae1; Mrnp41 rno-let-7c 116 142 -UUGGUA---UGUUGGAUGAUGGAGU |:|| :|::|:|:||::||| CAGCCUCCCGGCGGCUUGCUGUCUCU Rae1; Mrnp41 rno-let-7d 112 143 UGAUACGUUGGA-----------UGAUGGAGA- :||||:||| :||::|||| --GGUGCAGCCUCCCGGCGGCUUGCUGUCUCUC Rae1; Mrnp41 rno-miR-1* 204 229 -CCCAU-GUAUU--UCUUCAUACACG ||| |||:| || |||:||| AGGGGAUCAUGAGCAGCAGUGUGUA- Rae1; Mrnp41 rno-miR-100 158 176 GUGUUCAAGCCUAGAUGCCCAA :|::|||| |||| ||| UGCGGGUUC---UCUAAGGGA- Rae1; Mrnp41 rno-miR-125a 158 210 GUGUCCA-------------AUU--------------UCCCAGAG UCCCU :|:||| |:| :||||||| ||||: UGCGGGUUCUCUAAGGGAACUGAGACUCAAUGAAGUCGGGGUCUCGAGGGGA Rae1; Mrnp41 rno-miR-125b 183 210 -AGUG--UUCAAUCCCAGAG-UCCCU- ||| |||| :||||||| ||||: CUCAAUGAAGUCGGGGUCUCGAGGGGA Rae1; Mrnp41 rno-miR-133a 190 214 UGUCGA--CCAAC-UUCCCCUGGUU ||: ||| :||||||:|| -AAGUCGGGGUCUCGAGGGGAUCAU Rae1; Mrnp41 rno-miR-133b 190 214 AUCGA--CCAAC-UUCCCCUGGUU ||: ||| :||||||:|| AAGUCGGGGUCUCGAGGGGAUCAU Rae1; Mrnp41 rno-miR-140* 237 272 ACAGGCA--CCAAGA--------UGGGACACCAU- ||: | || || :|||||||||: CGUUGGGAGGGAACUGCUGAUGAGCCCUGUGGUGU Rae1; Mrnp41 rno-miR-145 160 185 UUCCCUAAG-GA--CCCUUUUGAC-CUG- ||:||| || |||| |||| ||| --CGGGUUCUCUAAGGGA--ACUGAGACU Rae1; Mrnp41 rno-miR-150 219 248 -GUGAC-CAUGU----UCCCAACCCUCU- || || |||| || ||||||||: GCAGUGUGUACUUGACAGCGUUGGGAGGG Rae1; Mrnp41 rno-miR-151 182 210 GGAGUU-------CCUCGGAG-UCAGAUCA ||||| ||:|:||| || :| ACUCAAUGAAGUCGGGGUCUCGAGG--GGA Rae1; Mrnp41 rno-miR-185 124 146 CUUGACGGAA---AGAGAGGU- ::| ||:| |||||||| CGGCGGCUUGCUGUCUCUCCAU Rae1; Mrnp41 rno-miR-194 76 111 -AGGUGU--ACCUCA-----ACG--ACAA--UGU- ||||| ||||| ||: |||| :|| GUCCACCCCUGGAGGGACUGUGUUCUGUUCCGCAU Rae1; Mrnp41 rno-miR-200b 208 227 CAGUAGUAAUGGUCCGUCAUAAU ||||| | || |||||:| --GAUCAUGAGCA-GCAGUGUG- Rae1; Mrnp41 rno-miR-204 191 211 UCCGUAUCCUACUGUUUCCCUU |: :|| |:|:|||| -AGUCGGGGUCU-CGAGGGGAU Rae1; Mrnp41 rno-miR-211 160 211 -UCCG-----UUUCCU------------ACU-----------GUUUCCCUU :||: ||:||| ||| |:|:|||| CGGGUUCUCUAAGGGAACUGAGACUCAAUGAAGUCGGGGUCUCGAGGGGAU Rae1; Mrnp41 rno-miR-212 66 98 CCGG-CACU---------GACCU--CUGACAAU ||| |||: ||||| |||||| UGCCUGUGGUGUCCACCCCUGGAGGGACUGUG- Rae1; Mrnp41 rno-miR-214 64 91 -GACGGACAGACAC------GGACGACA |||||||| ||| |||| | CCUGCCUGUG-GUGUCCACCCCUGGAGG Rae1; Mrnp41 rno-miR-217 93 120 UAGGUC-AGUCAAGGA----CUACGUCAU : | || ||||| |:||||| -CUGUGUUCUGUUCCGCAUCGGUGCAGC- Rae1; Mrnp41 rno-miR-22 110 134 UGUCAAGAAGUUGA----CCGUCGAA- |:|| ||:| |||:|||| UCGGUG---CAGCCUCCCGGCGGCUUG Rae1; Mrnp41 rno-miR-24 245 264 GACAAGGACGACUUGACUCGGU | ||||||| |||||| -GGGAACUGCUGA--UGAGCCC Rae1; Mrnp41 rno-miR-292-3p 105 137 UGUG-AGUU---UUGGA---CCGCCG--UGAA |:| ||:: |:||| |||||| :|| CCGCAUCGGUGCAGCCUCCCGGCGGCUUGCUG Rae1; Mrnp41 rno-miR-298 13 42 -CCU-----UCUUGUCG-GGAGGAGACGG ||: :||:| |||||||||| GGGGCUGUCGGAGCCCCACCUCCUCUGCA Rae1; Mrnp41 rno-miR-29a 251 274 UUGGCUAAA--GUCUACCACGAU :|:||| | :|||||:| UGCUGAUGAGCCCUGUGGUGUUU Rae1; Mrnp41 rno-miR-29b 247 274 -UUG-UGACUAAA-GUU-UACCACGAU ||| :||||| | :|||||:| GAACUGCUGAUGAGCCCUGUGGUGUUU Rae1; Mrnp41 rno-miR-29c 251 274 -UGGCUAAA-GUU-UACCACGAU :|:||| | :|||||:| UGCUGAUGAGCCCUGUGGUGUUU Rae1; Mrnp41 rno-miR-30a-3p 155 184 -CGACGUUUGU-AGG----C-UGACUUUC |||||: : ||: | |||||:| UGCUGCGGGUUCUCUAAGGGAACUGAGAC Rae1; Mrnp41 rno-miR-31 115 137 -GUCGAUACGGUCGUAGAACGGA |||| ||:|| |||||: GCAGCCUC-CCGGCGGCUUGCUG Rae1; Mrnp41 rno-miR-320 130 160 AAGCGGGAGAGUU---------GGGUCGAAAA |:||: |||| ||| ||| CUUGCUGUCUCUCCAUUCCACUCCCUGCUG-- Rae1; Mrnp41 rno-miR-324-5p 66 99 UGUGGUUAC--------GGGAUC-CCCU-ACGC- :|| :|| ||||:| |||| ||:| -UGCCUGUGGUGUCCACCCCUGGAGGGACUGUGU Rae1; Mrnp41 rno-miR-331 190 210 AAGAUCCUAUCCGGG--UCCCCG || :||:|: ||||| ---AAGUCGGGGUCUCGAGGGGA Rae1; Mrnp41 rno-miR-337 202 222 -UUUCCGUAGUAUAUCCUCGACUU :|:|| |||||: || ||| CGAGGGGAUCAUG-AGCAGCA--- Rae1; Mrnp41 rno-miR-339 58 94 -ACUCGA---GGACCUCC-----------UGUCCCU- ||:|| |||| || : ||||| UUGGGCCCUGCCUGU-GGUGUCCACCCCUGGAGGGAC Rae1; Mrnp41 rno-miR-340 161 185 -CCGAU--AUUUCAUUGACUCUGCCU ||:| |||:| ||||||||| GGGUUCUCUAAGGGAACUGAGACU-- Rae1; Mrnp41 rno-miR-343 229 250 AGACC--CGUGUGCCUCCCUCU :|| ||:: ||||||| CUUGACAGCGUUGGGAGGGAA- Rae1; Mrnp41 rno-miR-347 58 95 -ACCCGC--UGGG---------------UCUCCCUGU ||||| :||: :||||||| UUGGGCCCUGCCUGUGGUGUCCACCCCUGGAGGGACU Rae1; Mrnp41 rno-miR-351 159 200 -GUCCGAGU--UUCCCGAGG--------------AGUCCCU |:||:|| ||||| |: ||:||| GCGGGUUCUCUAAGGGAACUGAGACUCAAUGAAGUCGGGGU Rae1; Mrnp41 rno-miR-361 79 97 CAUGGGGACCUCUAAGACUAUU ||||||||||: ||| -CACCCCUGGAGGGACUGU--- Rae1; Mrnp41 rno-miR-363-5p 65 85 UUUAACG--UAGCACUAGGUGGGC ||| :| ||| ||||||| ---CUGCCUGUGGUG-UCCACCCC Rae1; Mrnp41 rno-miR-370 66 92 UUGGU--CCA-AGGUGGGGUCGUCCG :|| ||| |||||||| | ||| UGCCUGUGGUGUCCACCCCUGGAGGG Rae1; Mrnp41 rno-miR-409-3p 204 223 -CCCCAAGUGGCUCGUUGUAA |||| |||: |||||:|| AGGGGAUCAU-GAGCAGCAG- Rae1; Mrnp41 rno-miR-421 243 265 GUUGUUUGUAAAUUACUCCGG- |: :||| |:||||| || GAGGGAACUGCUGAUGAGCCCU Rae1; Mrnp41 rno-miR-449 43 71 -UGGU--CGAUUGUUA---UGUGACGGU ||| || ||| :| ||||| CACCUCUGCCCACACUUGGGCCCUGCCU Rae1; Mrnp41 rno-miR-485 101 124 CUUAAGUAGU-GCCG-GUCGGAGA :||| || |||: ||||||| -UGUUCCGCAUCGGUGCAGCCUCC Rae1; Mrnp41 rno-miR-503 126 162 -GUC--AUGACA-------------AGGG-CGACGAU |:| |:|||| |||| ||||| GCGGCUUGCUGUCUCUCCAUUCCACUCCCUGCUGCG- Rae1; Mrnp41 rno-miR-540 10 45 -GGUCCU---AGCU----------GGAGAC-UGGA ||:||: |||: |||||| ||| GCCGGGGCUGUCGGAGCCCCACCUCCUCUGCACCA Rae1; Mrnp41 rno-miR-98 114 142 UUGUUA------UGUUGAAUGAUGGAGU :||: :|::|||:||::||| UGCAGCCUCCCGGCGGCUUGCUGUCUCU Rae1; Mrnp41 rno-let-7b 117 141 UUGGUG---UGUUGGAUGAUGGAGu |:|| | :|::|:|:||::||| AGCCTCCCGGCGGCTTGCTGTCTCt Rae1; Mrnp41 rno-let-7c 120 141 uuGGUAUGUUGGAUGAUGGAGu || :|::|:|:||::||| ctCCCGGCGGCTTGCTGTCTCt Rae1; Mrnp41 rno-let-7d 121 141 ugauaCGUUGGAUGAUGGAGA ||::|:|:||::|||| tcccgGCGGCTTGCTGTCTCT Rae1; Mrnp41 rno-miR-1* 206 229 CCCAUGUAUU--UCUUCAUACAcg ||| |||:| || |||:||| GGGATCATGAGCAGCAGTGTGTac Rae1; Mrnp41 rno-miR-100 144 165 guguucaagccuaGAUGCCCAA ||:|||||| attccactccctgCTGCGGGTT Rae1; Mrnp41 rno-miR-125a 185 208 guguccaauuuCCCAGAG-UCCCu ||||||| |||| caatgaagtcgGGGTCTCGAGGGg Rae1; Mrnp41 rno-miR-125a 151 175 gugucCAAUUUCCCAGAG--UCCCU | |: :|| |||| ||||| tccctGCTGCGGGTTCTCTAAGGGA Rae1; Mrnp41 rno-miR-125b 184 208 AGU--GUUCAAUCCCAGAG-UCCCu ||| |||| :||||||| |||| TCAATGAAGTCGGGGTCTCGAGGGg Rae1; Mrnp41 rno-miR-133a 193 213 uGUCGACCA-ACUUCCCCUGGUu |:| ||| | :||||||:|| tCGG--GGTCTCGAGGGGATCAt Rae1; Mrnp41 rno-miR-133b 192 213 aucgaCCA-ACUUCCCCUGGUu ||| | :||||||:|| gtcggGGTCTCGAGGGGATCAt Rae1; Mrnp41 rno-miR-140* 247 270 acaGGCACCAAGAUGGGACACCAu |:| | | :||||||||| gaaCTGCTGATGAGCCCTGTGGTg Rae1; Mrnp41 rno-miR-140* 53 76 acagGCACCAAGAUGGGACACCAu | ||| | |||||||| cacaCTTGGGCCCTGCCTGTGGTg Rae1; Mrnp41 rno-miR-145 158 183 uucCCUAAG-GACCCUUUUGAC-CUG ||:||| || |::||||| ||| tgcGGGTTCTCTAAGGGAACTGAGAC Rae1; Mrnp41 rno-miR-150 220 246 GUGAC-CAUG---U-UCCCAACCCUCu || || |||| | || |||||||| CAGTGTGTACTTGACAGCGTTGGGAGg Rae1; Mrnp41 rno-miR-185 128 144 CUUGACGGAAAGAGAGGU |: :|| || |||||||| GGCTTG-CTGTCTCTCCA Rae1; Mrnp41 rno-miR-194 77 107 AGGU--GUACCUC----A-AC--GACAAUGu |||| | ||||| | || ||||| | TCCACCCCTGGAGGGACTGTGTTCTGTTCCg Rae1; Mrnp41 rno-miR-200b 206 227 cagUAGUAAUGGUCCGUCAUAau ||||| | || |||||:| gggATCATGAGCA-GCAGTGTgt Rae1; Mrnp41 rno-miR-211 191 210 UCCGUUUCCUACUGUUUCCCUu || | :||:| |:|:|||| AGTC--GGGGTCTCGAGGGGAt Rae1; Mrnp41 rno-miR-212 76 98 CCGGCACUGACCU--CUGACAau | || ||||| |||||| GTCCACCCCTGGAGGGACTGTgt Rae1; Mrnp41 rno-miR-214 134 160 GACGGACAG---A---CACGGACGACa |||:|| || | | ||||||| CTGTCTCTCCATTCCACTCCCTGCTGc Rae1; Mrnp41 rno-miR-214 48 72 GACGG--ACAGACAC-GGAC-GACA ||||| :|| | |||| |||| CTGCCCACACTTGGGCCCTGCCTGT Rae1; Mrnp41 rno-miR-217 93 120 uaggucAGUCAAGG---A-CUACGUCau || ||||| | |:||||| ctgtgtTCTGTTCCGCATCGGTGCAGcc Rae1; Mrnp41 rno-miR-22 115 132 uGUCAAGAAGUUGACCGUCGAA ||| | || | |||:|||| gCAG--CCTC--CCGGCGGCTT Rae1; Mrnp41 rno-miR-24 244 263 gacaagGACGACUUGACUCGGu ||||||| |||||| agggaaCTGCTGA--TGAGCCc Rae1; Mrnp41 rno-miR-298 19 41 ccuuCUUGUCG-GGAGGAGACGg ||:| | |||||||||| gtcgGAGCCCCACCTCCTCTGCa Rae1; Mrnp41 rno-miR-298 30 63 ccuucuuGUCG-GGAGGAGACGG----------- | || || |||||||| acctcctCTGCACCACCTCTGCCCACACTTGGGC Rae1; Mrnp41 rno-miR-29a 248 273 UUGGCUA-AAGUC----UACCACGAu |||:| | | || :|||||:| AACTGCTGATGAGCCCTGTGGTGTTt Rae1; Mrnp41 rno-miR-29b 248 273 UUG-UGACUA--AAGUUUACCACGAu ||| :||||| | :|||||:| AACTGCTGATGAGCCCTGTGGTGTTt Rae1; Mrnp41 rno-miR-29c 252 273 uGGCUA--AAGUUUACCACGAu |:||| | :|||||:| gCTGATGAGCCCTGTGGTGTTt Rae1; Mrnp41 rno-miR-30a-3p 156 183 CGACGUUU-GUAGG----C-UGACUUUc |||||::: : ||: | |||||:| GCTGCGGGTTCTCTAAGGGAACTGAGAc Rae1; Mrnp41 rno-miR-31 116 136 GUCGAUACGGUCGUAGAACGga |||| | ||:||: ||||| CAGC-CTCCCGGCGGCTTGCtg Rae1; Mrnp41 rno-miR-320 112 134 aagCG--GGAGAGUUGGGUCGAAaa || |||| |:: |:|||| ggtGCAGCCTCCCGG--CGGCTTgc Rae1; Mrnp41 rno-miR-324-5p 75 97 uguGGUUACGGGAUC-CCCU-ACGC ||| ||||:| |||| ||:| tgtCCA--CCCCTGGAGGGACTGTG Rae1; Mrnp41 rno-miR-331 183 209 aAGAUCCU--AUCC----GGGUCCCCg || | || | || :| ||||| cTCAATGAAGTCGGGGTCTCGAGGGGa Rae1; Mrnp41 rno-miR-337 203 221 uUUCCGUAGUAUAUCCUCGACuu |:|| ||||| |||| | gAGGGGATCAT----GAGCAGca Rae1; Mrnp41 rno-miR-339 77 98 acucGAGGACCU-CCUGUCCCu | |||||| |||| | | tccaCCCCTGGAGGGACTGTGt Rae1; Mrnp41 rno-miR-340 162 186 CC--GAUAUUUCAUUGACUCUGccu || || |||:| ||||||||| GGTTCTCTAAGGGAACTGAGACtca Rae1; Mrnp41 rno-miR-343 228 250 aGACCCGU-GUG--CCUCCCUcu || | || |:: ||||||| aCTTGACAGCGTTGGGAGGGAac Rae1; Mrnp41 rno-miR-347 72 94 ACC-C-GCUGGG--UCUCCCUGu ||| | | |||| :||||||| TGGTGTCCACCCCTGGAGGGACt Rae1; Mrnp41 rno-miR-351 179 208 gUCCGAGU---UUC--CCGAGGAG-UCCCu || |||| ||| || :||| |||| gAGACTCAATGAAGTCGGGGTCTCGAGGGg Rae1; Mrnp41 rno-miR-351 153 175 gucCGAGUUUCCCGAG-GAGUCCCU ||| : |||:|| || ||||| cctGCT--GCGGGTTCTCTAAGGGA Rae1; Mrnp41 rno-miR-361 78 106 caUGGGGACCUC-------UAAGACUAuu |||||||||| :||||| | ccACCCCTGGAGGGACTGTGTTCTGTTcc Rae1; Mrnp41 rno-miR-363-5p 62 84 uuuaACGUAGCAC--UAGGUGGGc ||| | ||| :||||||| gcccTGCCT-GTGGTGTCCACCCc Rae1; Mrnp41 rno-miR-370 68 91 uugguCCA-AGGUGGGGUCGUCCg ||| |||||||| | ||| cctgtGGTGTCCACCCCTGGAGGg Rae1; Mrnp41 rno-miR-409-3p 205 223 CCCCAAGUGGCUCGUUGUaa |||| ||| :|||||:|| GGGGATCA-TGAGCAGCAgt Rae1; Mrnp41 rno-miR-433 198 216 ugugGCUCCUCGGGUAGUACUa |||||:| ||||||| gtctCGAGGGG---ATCATGAg Rae1; Mrnp41 rno-miR-449 41 70 UGGU-----CGAUUGUUA---UGUGACGGu |||| || ||| | :| ||||| ACCACCTCTGCCCACACTTGGGCCCTGCCt Rae1; Mrnp41 rno-miR-485 100 123 cuuAAGUAGU-GCCG-GUCGGAGa ||| || |||: ||||||| ctgTTCCGCATCGGTGCAGCCTCc Rae1; Mrnp41 rno-miR-503 143 162 GUCAUGACAAGGGCGACGau || | | | ||:||||| CATTCCACTCCCTGCTGCgg Rae1; Mrnp41 rno-miR-540 36 54 gGUCCUAGCUGGAGACUGGa | | | | ||||||| || tCTGCA-CCACCTCTGCCCa Rae1; Mrnp41 rno-miR-98 120 141 uuguuauGUUGAAUGAUGGAGu |::|||:||::||| ctcccggCGGCTTGCTGTCTCt Rae1; Mrnp41 rno-miR-140* 69 76 AC-----------AGGC--------ACCAA-GAUGGGACACCAU ||:| ||| ||: ||||||||: CCUCUGCACCACCUCUGCCCACACUUGGGCCCUG-CCUGUGGUGU Rae1; Mrnp41 rno-miR-140* 263 270 A---------CAGGCA-CCAA-GA--------UGGGACACCAU ||: | || || :|||||||||: ACUUGACAGCGUUGGGAGGGAACUGCUGAUGAGCCCUGUGGUGU Rae1; Mrnp41 rno-miR-150 239 246 ----------------GUGAC-CAUGU----UCCCAACCCUCU || || |||| || ||||||||: AGGGGAUCAUGAGCAGCAGUGUGUACUUGACAGCGUUGGGAGGG Rae1; Mrnp41 rno-miR-185 137 144 C----------------------UUGACGGAA---AGAGAGGU ::| ||:| |||||||| GUUCCGCAUCGGUGCAGCCUCCCGGCGGCUUGCUGUCUCUCCAU Rae1; Mrnp41 rno-miR-214 153 160 GA---------CGGACAGACAC--------------GGACGACA ||:|| |||| ||||||| GCCUCCCGGCGGCUUG-CUGUCUCUCCAUUCCACUCCCUGCUGC Rae1; Mrnp41 rno-miR-298 45 52 ----CCU-----UCUUGU-----------CG-GGAGGAGACGG ||: :||:| || || |||||||| GCCGGGGCUGUCGGAGCCCCACCUCCUCUGCACCACCUCUGCCC Rae1; Mrnp41 rno-miR-347 87 94 -------ACCCGCU-----------------GGGUCUCCCUGU ||||| || ||||||| CCACACUUGGGCCCUGCCUGUGGUGUCCACCCCUGGAGGGACU Rae1; Mrnp41 rno-miR-363-5p 77 84 UUUA--------------------ACGUAGCAC--UAGGUGGGC ||| :||| :||||||| CCACCUCUGCCCACACUUGGGCCCUGCC-UGUGGUGUCCACCCC Rae1; Mrnp41 rno-miR-433 209 216 UGU------------------------GGCUCCUCGGGUAGUACUA :|||||:| ||||||| GAACUGAGACUCAAUGAAGUCGGGGUCUCGAGGGG---AUCAUGAG Rae1; Mrnp41 rno-miR-485 116 123 CU-------------------UAAGUAGU-GCCG-GUCGGAGA :||| || |||: ||||||| CCCCUGGAGGGACUGUGUUCUGUUCCGCAUCGGUGCAGCCUCC

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Rae1 RAID00498552 rno-miR-3541 miRNA MIMAT0017795 Rae1 mRNA 362281 Prediction 0.1828 Rae1 RAID01012755 rno-miR-125b-5p miRNA MIMAT0000830 Rae1 mRNA 362281 Prediction 0.1828 Rae1 RAID01126681 rno-miR-145-5p miRNA MIMAT0000851 Rae1 mRNA 362281 Prediction 0.1828 Rae1 RAID01465082 rno-miR-125a-5p miRNA MIMAT0000829 Rae1 mRNA 362281 Prediction 0.1828 Rae1 RAID01628799 rno-miR-185-5p miRNA MIMAT0000862 Rae1 mRNA 362281 Prediction 0.2202 Rae1 RAID02137207 rno-miR-298-5p miRNA MIMAT0000900 Rae1 mRNA 362281 Prediction 0.1828 Rae1 RAID02346025 rno-miR-351-5p miRNA MIMAT0000608 Rae1 mRNA 362281 Prediction 0.1828 Rae1 RAID02578505 rno-miR-26a-5p miRNA MIMAT0000796 Rae1 mRNA 362281 Prediction 0.1828 Rae1 RAID02892918 rno-miR-26b-5p miRNA MIMAT0000797 Rae1 mRNA 362281 Prediction 0.1828 Rae1 RAID03106385 rno-miR-214-3p miRNA MIMAT0000885 Rae1 mRNA 362281 Prediction 0.1828