DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004652 rno-miR-342-5p 300050 Bop1 gaGUUAGUGUCUAUCGUGGGGa ::| | :| :|:||||||| cuUGACCUUAUGUGGCACCCCa 2 21 123 144 [rn4:7:114500291-114500312:-] 0.4505 156 7 -17.88 -0.4764 MIMAT0005333 rno-miR-742 300050 Bop1 aaaUGGGUUGUACC------ACCGAAAg ||||| :: || ||||||| gucACCCACUGAGGUGUAACUGGCUUUa 2 20 187 214 [rn4:7:114500221-114500248:-] 0.4269 142 7 -16.67 -0.3073 MIMAT0012845 rno-miR-935 300050 Bop1 cgccaucGCCUUCGCCAUUGACc | ||:|: ||||||| ucacccaCUGAGGU-GUAACUGg 2 17 188 209 [rn4:7:114500226-114500247:-] 0.4269 150 7 -19.14 -0.1556 MIMAT0012855 rno-miR-666 300050 Bop1 ccgaGAGUGUCGGC-ACGGG-CGa ||: |:|| | ||||| || ggaaCUUCCGGCAGCUGCCCAGCc 2 19 100 123 [rn4:7:114500312-114500335:-] 0.4742 121 0 -21.21 -0.2539 MIMAT0000810 rno-miR-31 300050 Bop1 gucgauACGGUCGUA-GAACGGa ||||| ::| |||||| cuugauUGCCACUGUCCUUGCCu 2 17 69 91 [rn4:7:114500344-114500366:-] 0.4422 128 6 -18.74 -0.2191 MIMAT0000848 rno-miR-142-3p 300050 Bop1 agguauuucaucCUUUGUGAUGu || ||||||| ---------gcuGACACACUACu 2 12 1 14 [rn4:7:114500421-114500434:-] 0.4435 147 7 -10.10 -0.1398 MIMAT0003179 rno-miR-542-3p 300050 Bop1 aaaguCAAUAGUUA---GACAGUGu | |||::|| ||||||| aagguGGUAUUGAUACACUGUCACc 2 18 168 192 [rn4:7:114500243-114500267:-] 0.4269 152 7 -11.99 -0.2606 MIMAT0003208 rno-miR-374 300050 Bop1 gugaaucgUCCAACAUAA-UAUa |||| ||||| ||| agaaggaaAGGUGGUAUUGAUAc 2 15 161 183 [rn4:7:114500252-114500274:-] 0.4269 126 0 -10.31 -0.2285

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G060547 Bop1 Rattus norvegicus 300050

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Bop1 rno-miR-10a 5 37 -GUGUUU--AAG-CCUA--GA--UGUCCCAU- |||| ||| ||| || | |||||: ACACACUACUUCAGGAGGCCUGGAGAGGGUGC Bop1 rno-miR-138 142 156 CUAAGUGUUGUGGUCGA- || ||| |||||| ---CCAGAAC-CCAGCUU Bop1 rno-miR-145 196 222 -UUCCCUAAGGACCCUUUUGACCUG- :||| :| |||| |:|||:| UGAGGUGUAACUGGCUUUAUUGGGCA Bop1 rno-miR-150 204 234 GUGACC---AUGUUCCC-------AACCCUCU ||||| ||: ||| |||||: AACUGGCUUUAUU-GGGCAAUAAAUUGGGGC- Bop1 rno-miR-184 65 87 -UGGGAAUAGUCAAGAGGCAGGU ||||||: |:|||| GACCCUUGAUUGCCA-CUGUCCU Bop1 rno-miR-199a 164 189 -CUUGUCCAUCA-GACU-UGUGACCC |:| ||||:|| :||| |||||| AGGAAAGGUGGUAUUGAUACACUGU- Bop1 rno-miR-207 16 34 UUCCCUCCUCUCGGUCCUCUUCG ||||| ||| |||||:| ----CAGGAG-GCCUGGAGAGGG Bop1 rno-miR-22 99 117 UGUCAAGAAGUUGACCGUCGAA :| |||| ||||||| -UGGAACUUCC---GGCAGCUG Bop1 rno-miR-221 115 140 CUUUGGGUCGU--CUGU--UACAUCGA :|||||| ||| ||||:|| --UGCCCAGCCUUGACCUUAUGUGGCA Bop1 rno-miR-26a 79 99 CGGAUAGGACCUAAUGAACUU ||:|||| ||||| -ACUGUCCUUGCCUUCUUGAU Bop1 rno-miR-26b 79 99 UUGGAUAGGACUUAAUGAACUU ||:|||| ||||| --ACUGUCCUUGCCUUCUUGAU Bop1 rno-miR-27a 63 85 CGCCUU-GAAU---CGGUGACACUU ||| |||: |||||||| -AGGACCCUUGAUUGCCACUGUC-- Bop1 rno-miR-291-3p 217 237 -CCGUGUGUUUCACCUUCGUGAAA |||| |:||| ||| :|||| GGGCA-AUAAAUUGG-GGCACC-- Bop1 rno-miR-296 15 46 UGUCCUAA----CUC-CCC-C-C-C-GGGA- ||||| ||| ||| | | | |||| UCAGGAGGCCUGGAGAGGGUGCGUGUCCCUC Bop1 rno-miR-31 110 132 -GUCGAUACGGUCGUAGAAC-GGA- |||||: ||||| |||| ||| GCAGCUGC-CCAGC--CUUGACCUU Bop1 rno-miR-320 134 157 AAGCG-GGAGAGUUGGGUCGAAAA | || || | |||||||||| GUGGCACCCCAGAACCCAGCUUA- Bop1 rno-miR-324-3p 106 141 -GGUCGUCGUGG---------------ACCCCGUCACC ||:||||| | || |||| UCCGGCAGCUGCCCAGCCUUGACCUUAUGUGGCAC--- Bop1 rno-miR-324-5p 6 39 -UGUGGUUA-------CGGGA-UCCCCUACGC- ||||:| |||: || ||:|||| CACACUACUUCAGGAGGCCUGGAGAGGGUGCGU Bop1 rno-miR-326 11 34 -UGACCUCCUUCCCGGG--UCUCC- ||| |||| ||||: ||||| UACUUCAGGA--GGCCUGGAGAGGG Bop1 rno-miR-327 21 48 -UGGGA---------GUACGGGGAGUUCC :||: |:||:|||||| GGCCUGGAGAGGGUGCGUGUCCCUCAC-- Bop1 rno-miR-328 17 36 UGCCUUCCCG--UCUCUCCCGGUC ||| ||| :|||||||: -AGGA--GGCCUGGAGAGGGUG-- Bop1 rno-miR-329 16 40 UUUUUCCA-AUCGA-CCCACACAA |::||| |:| ||||| || CAGGAGGCCUGGAGAGGGUGCGUG Bop1 rno-miR-336 11 37 UCUGA---UCUAU--ACCU-UCCCACU ||| :|| |||| |||||| -UACUUCAGGAGGCCUGGAGAGGGUGC Bop1 rno-miR-339 18 35 ACUCGAGGACCUCCUGUCCCU ||| ||||||| |||| GGAGG-CCUGGAG---AGGGU Bop1 rno-miR-343 14 37 -AGA-C-CCGUGUGC-CUCCCUCU || | ||| | | ||||| | UUCAGGAGGC-CUGGAGAGGGUGC Bop1 rno-miR-347 30 69 ACCCGCU----GGG---------------UCUC-CCUGU |||:| ||| |||| |||| AGGGUGCGUGUCCCUCACACAGAAUCGAUAGAGAGGACC Bop1 rno-miR-34a 101 120 -UUGUUGGUCGAUUCUGUGACGGU ||| ||:|| :||||| GAACUUCCGGCA-----GCUGCCC Bop1 rno-miR-370 125 155 -UUGGUC--CAAGGUGGGGUCGUC---CG- :||| || |||||||| || UGACCUUAUGUGGCACCCCAGAACCCAGCU Bop1 rno-miR-378 11 35 -UGU-GUCC--UGGACCUCAGUCCUC || |||| :||||||| |||: UACUUCAGGAGGCCUGGAG--AGGGU Bop1 rno-miR-383 75 101 UCGGUGUCAG---UGGAAGA-CUAGA ||||| ||| :|||||| |||: UGCCACUGUCCUUGCCUUCUUGAUUG Bop1 rno-miR-409-3p 207 226 CCCCAAGUGGCUCGUUGUAA || ||:|::|:||||:| UGGCUUUAUUGGGCAAUAA- Bop1 rno-miR-412 20 42 UGCCGAUCACCUGGUCCACUU-CA- ||| |||| :|||| || -AGGCC--UGGAGAGGGUGCGUGUC Bop1 rno-miR-421 3 26 GUUGUUUGUAAAUUA-CUCCGG- :||| || |||||| UGACACACUACUUCAGGAGGCCU Bop1 rno-miR-449 157 192 -UGGUCGA-UU----------GUUAUGUGACGGU- :|||| :| ::||||||||:|| AGCCAGAAGGAAAGGUGGUAUUGAUACACUGUCAC Bop1 rno-miR-483 6 37 -UGUUCUGC---CCUCC---CCUC-CUCACU ||| || ||||| |||| |:||| CACACUACUUCAGGAGGCCUGGAGAGGGUGC Bop1 rno-miR-485 105 127 CUUAAGUAGUGCCG-------GUCGGAGA || |||| ||||||: ------UUC-CGGCAGCUGCCCAGCCUUG Bop1 rno-miR-542-3p 169 193 AAGUCA--AUAGUUA---GACAGUGU :|| |||::|| ||||||| --AGGUGGUAUUGAUACACUGUCACC Bop1 rno-miR-10a 8 35 GUGUUUAAG-CCU--AGA--UGUCCCAu ||| | ||| ||| || | ||||| CACTACTTCAGGAGGCCTGGAGAGGGTg Bop1 rno-miR-124a 108 133 aCCGU--AAGUGGC-GCAC-GGAAUu |||| | | | | | || ||||| cGGCAGCTGCCCAGCCTTGACCTTAt Bop1 rno-miR-138 139 154 cuaaGUGUUGUGGUCGA || ||| |||||| acccCAGAAC-CCAGCT Bop1 rno-miR-145 186 211 uucccuaagGAC-CC-UUUUGACCug ||| || : |||||| tgtcacccaCTGAGGTGTAACTGGct Bop1 rno-miR-150 193 222 GUGA--CCAUGUU--CC----CAACCCucu |||| |||::|| || ||||| CACTGAGGTGTAACTGGCTTTATTGGGcaa Bop1 rno-miR-184 66 86 UGGGAAUAGUCAAGAGGCAGGu ||||||: : | | |:|||| ACCCTTGATTG-CCACTGTCCt Bop1 rno-miR-199a 165 189 CUUGUCCAUCA-GACU-UGUGACcc |:| ||||:|| :||| |||||| GGAAAGGTGGTATTGATACACTGtc Bop1 rno-miR-207 12 33 uucccUCCUCUCGGUCCUCUUCg ||||| ||| |||||:| acttcAGGAG-GCCTGGAGAGGg Bop1 rno-miR-22 87 116 ugucAAGAA-----GUUGA---CCGUCGAa ||||| |||| ||||||| tgccTTCTTGATTGGAACTTCCGGCAGCTg Bop1 rno-miR-221 113 139 cuuuGGGUCG--UCUG--UUACAUCGa |||||| ||| ||||:|| gctgCCCAGCCTTGACCTTATGTGGCa Bop1 rno-miR-26a 76 98 CG--GAUAGGACCUAAUGAACUu || ||:|||| | | ||||| GCCACTGTCCTTGCCTTCTTGAt Bop1 rno-miR-26b 77 98 uugGAUAGGACUUAAUGAACUu ||:|||| : | ||||| ccaCTGTCCTTGCCTTCTTGAt Bop1 rno-miR-27a 62 86 CGCCU-UGAAU---CGGUGACAcuu | ||| |||: |||||||| GAGGACCCTTGATTGCCACTGTcct Bop1 rno-miR-291-3p 218 238 CCGUGUGUUUCACCUUCGUGaaa |||| |:||| ||| :|||| GGCA-ATAAATTGG-GGCACcgc Bop1 rno-miR-296 23 44 uGUCCUAACUCCC---CCCCGGGA | ||| ||||| | | |||| cCTGGA--GAGGGTGCGTGTCCCT Bop1 rno-miR-298 55 84 cCU-UCUUGUC-GGGA------GGAGACGG || |||: :| |||| || |||:| cGATAGAGAGGACCCTTGATTGCCACTGTC Bop1 rno-miR-31 111 130 GUCGAUACGGUCGUAGAAC-GGA |||||: ||||| |||| ||| CAGCTG-CCCAGC--CTTGACCT Bop1 rno-miR-320 134 157 aAGCG-GGAGAGUUGGGUCGAAaa | || || | |||||||||| gTGGCACCCCAGAACCCAGCTTaa Bop1 rno-miR-324-3p 95 117 ggUCGUCGUGGACCCCGUC-ACc | ::| ||:| ||||| || tgATTGGAACTTCCGGCAGCTGc Bop1 rno-miR-324-5p 7 37 UGUGGUUA------CGGGAUC-C-CCUACGC ||||:| | | |||:| | ||:|||| ACACTACTTCAGGAGGCCTGGAGAGGGTGCG Bop1 rno-miR-326 12 30 UGACCUCCUUCCCGGGUCUCc ||| |||| ||||::||| ACTTCAGGA--GGCCTGGAGa Bop1 rno-miR-327 31 49 ugggaGUACGGGGAGUucc |:||:|||||| gggtgCGTGTCCCTCAcac Bop1 rno-miR-328 15 37 uGCCUUCCCG-UCUCUCCCgguc | |:||| | :||||||| tCAGGAGGCCTGGAGAGGGtgcg Bop1 rno-miR-336 15 36 ucugaUCUAUACC-UUCCCACu ||: ||| :|||||| tcaggAGGCCTGGAGAGGGTGc Bop1 rno-miR-339 9 34 acucGAGGACCU-----CCUGUCCCu ||:| ||| ||| |||| actaCTTCAGGAGGCCTGGAGAGGGt Bop1 rno-miR-343 15 36 AGAC--CCGUGUGCCUCCCUCu || | ||| :: ||||| | TCAGGAGGCCTGGAGAGGGTGc Bop1 rno-miR-347 16 36 acCCGCUGGG--UCUCCCugu || |:||: |||||| caGGAGGCCTGGAGAGGGtgc Bop1 rno-miR-347 51 68 acccGCUGGGUCUC-CCUGu ||| :|||| |||| gaatCGA--TAGAGAGGACc Bop1 rno-miR-34a 99 119 uugUUGGUCGAUUCUGU-GACGGu |||: | |:|| ||||| tggAACTTCC---GGCAGCTGCCc Bop1 rno-miR-370 147 167 UUGGUCCAAGGUGGGGUCGUCCg | |||| || | |||| ||| ACCCAGCTT--AAGCCAGAAGGa Bop1 rno-miR-378 5 21 UGUGUCCUGGACCUCAGUCCUC ||||| ||: ||||||| ACACACTACT-----TCAGGAG Bop1 rno-miR-409-3p 207 226 cCCCAAGUGGCUCGUUGUaa || ||:|::|:||||:| tGGCTTTATTGGGCAATAaa Bop1 rno-miR-412 9 33 UGCCGA--UCACCUGGUCCACUUCa || || || |:|| || ||:| ACTACTTCAGGAGGCCTGGAGAGGg Bop1 rno-miR-449 169 190 ugguCGAUUGUUAUGUGACGGU | || ::||||||||:|| aggtGGTATTGATACACTGTCA Bop1 rno-miR-483 10 36 uguucuGCCCUCC---CCUC-CUCACu | ||||| |||| |:||| ctacttCAGGAGGCCTGGAGAGGGTGc Bop1 rno-miR-485 101 126 CUU-AA-GUAGU--GCCGGUCGGAga ||| || |: || :| ||||||| GAACTTCCGGCAGCTGCCCAGCCTtg Bop1 rno-miR-92 19 40 gUCCGGCCCUGU-UCACGuuau ||||| ||| | :|||| gAGGCCTGGAGAGGGTGCgtgt Bop1 rno-miR-22 109 116 UG------------------------UCAAGAAGUUGACCGUCGAA :| |||| ||||||| UUGCCACUGUCCUUGCCUUCUUGAUUGGAACUUCC---GGCAGCUG Bop1 rno-miR-542-3p 185 192 AAG--------------------UCAAUAGUUA---GACAGUGU :|| || || ||||||| CAGCUUAAGCCAGAAGGAAAGGUGGU-AUUGAUACACUGUCACC

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Bop1 RAID00064312 rno-miR-374-5p miRNA MIMAT0003208 Bop1 mRNA 300050 Prediction 0.1828 Bop1 RAID01729085 rno-miR-142-3p miRNA MIMAT0000848 Bop1 mRNA 300050 Prediction 0.1828 Bop1 RAID01887823 rno-miR-31a-5p miRNA MIMAT0000810 Bop1 mRNA 300050 Prediction 0.1828 Bop1 RAID03071013 rno-miR-542-3p miRNA MIMAT0003179 Bop1 mRNA 300050 Prediction 0.1828